View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17148_high_10 (Length: 358)
Name: NF17148_high_10
Description: NF17148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17148_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 46941620 - 46941278
Alignment:
| Q |
1 |
aaatagagtcagttgtggggtaatgtaaccatgtctaccatagacatattctgaacacagaacaaaatcaaaacgtacatattaattgcagtgccctctt |
100 |
Q |
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| T |
46941620 |
aaatagagtcagttgtggggtaatgtaaccatgtctaccatagacatattctgaacacagaacaaaatcaaaacgtacatattaattgcagtgccctctt |
46941521 |
T |
|
| Q |
101 |
ctggatattcaaatctcaataccataaaagtattcttggtctggtggtgtaccactcacattttaacactaatctttttaagatattggaattgatgtaa |
200 |
Q |
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| T |
46941520 |
ctggatattcaaatctcaataccataaaagtattcttggtctggtggtgtaccactcacattttaacactaatctttttaagatattggaattgatgtaa |
46941421 |
T |
|
| Q |
201 |
taaaccataatatcatattaataacaaggacaaaatatacaga-ggggaatggaaatgctgtgttgtcaatacattaatgataatcctattttaaacagt |
299 |
Q |
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| T |
46941420 |
taaaccataatatcatattaataacaaggacaaaatatacagagggggaatggaaatgctgtgttgtcaatacattaatgataatcctattttaaacagt |
46941321 |
T |
|
| Q |
300 |
agtagcatactctagtacacctacaatttcgtggtccacacat |
342 |
Q |
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| T |
46941320 |
agtagcatactctagtacacctacaatttcgtggtccacacat |
46941278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 25 - 136
Target Start/End: Original strand, 38943754 - 38943864
Alignment:
| Q |
25 |
gtaaccatgtctaccatagacatattctgaacacagaacaaaatcaaaa-cgtacatattaattgcagtgccctcttctggatattcaaatctcaatacc |
123 |
Q |
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||||||||||||||||||| |||||||||||||| | |||||||||| ||| | |||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
38943754 |
gtaaccatgtctaccatagcaatattctgaacaca--ataaaatcaaaagcgtgcgtattaattgcagtgccttctcctggatattcaaatctcaatacc |
38943851 |
T |
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| Q |
124 |
ataaaagtattct |
136 |
Q |
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|| |||||||||| |
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| T |
38943852 |
atgaaagtattct |
38943864 |
T |
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