View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17148_high_16 (Length: 288)

Name: NF17148_high_16
Description: NF17148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17148_high_16
NF17148_high_16
[»] chr3 (6 HSPs)
chr3 (188-288)||(10300191-10300293)
chr3 (188-288)||(10320627-10320728)
chr3 (54-101)||(26953940-26953987)
chr3 (39-101)||(1051291-1051353)
chr3 (51-101)||(18517720-18517770)
chr3 (57-101)||(25760062-25760106)
[»] chr8 (9 HSPs)
chr8 (40-102)||(26657708-26657770)
chr8 (40-101)||(21593225-21593286)
chr8 (40-101)||(24184726-24184787)
chr8 (53-101)||(23595419-23595467)
chr8 (53-101)||(23604341-23604389)
chr8 (58-101)||(18036809-18036852)
chr8 (36-101)||(43848073-43848138)
chr8 (40-81)||(45268810-45268851)
chr8 (53-101)||(16290898-16290946)
[»] scaffold0068 (1 HSPs)
scaffold0068 (41-101)||(2336-2396)
[»] chr6 (17 HSPs)
chr6 (37-101)||(13570507-13570571)
chr6 (48-101)||(13575043-13575096)
chr6 (48-101)||(13577582-13577635)
chr6 (49-101)||(13565955-13566007)
chr6 (54-101)||(20899004-20899051)
chr6 (51-101)||(11319511-11319561)
chr6 (51-101)||(12435996-12436046)
chr6 (40-101)||(14641478-14641539)
chr6 (65-101)||(24617733-24617769)
chr6 (37-101)||(31633554-31633618)
chr6 (40-102)||(3056978-3057040)
chr6 (57-102)||(24205501-24205546)
chr6 (40-101)||(34338069-34338130)
chr6 (65-101)||(8483632-8483668)
chr6 (65-101)||(15141904-15141940)
chr6 (41-101)||(26592498-26592558)
chr6 (57-101)||(30884442-30884486)
[»] chr5 (11 HSPs)
chr5 (41-101)||(21711514-21711574)
chr5 (40-101)||(15614779-15614840)
chr5 (58-101)||(2259390-2259433)
chr5 (40-101)||(35341930-35341991)
chr5 (37-101)||(31329249-31329313)
chr5 (37-88)||(14480314-14480365)
chr5 (57-100)||(25538844-25538887)
chr5 (39-101)||(24122980-24123042)
chr5 (40-101)||(4120561-4120622)
chr5 (40-101)||(5784460-5784521)
chr5 (65-101)||(24765501-24765537)
[»] chr2 (5 HSPs)
chr2 (36-98)||(29216648-29216709)
chr2 (36-98)||(29329947-29330008)
chr2 (46-101)||(12102851-12102906)
chr2 (40-98)||(22169941-22169999)
chr2 (40-101)||(40926436-40926497)
[»] chr4 (5 HSPs)
chr4 (41-102)||(11415951-11416012)
chr4 (57-98)||(37005893-37005934)
chr4 (36-100)||(41068900-41068963)
chr4 (67-101)||(34657915-34657949)
chr4 (40-101)||(8667073-8667134)
[»] chr1 (15 HSPs)
chr1 (40-101)||(10032063-10032124)
chr1 (50-99)||(14986127-14986176)
chr1 (46-92)||(26505933-26505979)
chr1 (53-94)||(19088923-19088964)
chr1 (57-101)||(10433239-10433283)
chr1 (65-101)||(19054385-19054421)
chr1 (51-102)||(2583065-2583116)
chr1 (58-101)||(16816227-16816270)
chr1 (51-102)||(20808742-20808793)
chr1 (51-101)||(10423787-10423837)
chr1 (51-101)||(27035838-27035888)
chr1 (47-101)||(34528901-34528955)
chr1 (40-101)||(33064795-33064856)
chr1 (40-93)||(46391501-46391554)
chr1 (37-101)||(41574271-41574335)
[»] chr7 (3 HSPs)
chr7 (209-256)||(35631565-35631613)
chr7 (54-101)||(1633346-1633393)
chr7 (59-101)||(28780223-28780265)
[»] scaffold0009 (1 HSPs)
scaffold0009 (54-101)||(1483-1530)
[»] scaffold0437 (2 HSPs)
scaffold0437 (40-101)||(14305-14366)
scaffold0437 (41-101)||(11456-11516)
[»] scaffold0314 (1 HSPs)
scaffold0314 (51-101)||(583-633)
[»] scaffold0292 (1 HSPs)
scaffold0292 (51-101)||(21262-21312)
[»] scaffold0257 (1 HSPs)
scaffold0257 (51-101)||(16238-16288)
[»] scaffold0196 (1 HSPs)
scaffold0196 (40-101)||(806-867)
[»] scaffold0166 (1 HSPs)
scaffold0166 (65-101)||(7998-8034)


Alignment Details
Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 188 - 288
Target Start/End: Complemental strand, 10300293 - 10300191
Alignment:
Q  188 atatgcacatattttctttaaaacatattcattatgaaatttgataa-tttagtgtaacaaagttgtcgacaga-aatcaatcatagtttatgctgtaaa 285  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||| |||||||||||    
T  10300293 atatgcacattttttttttaaaacatattcattatgaaatttgataactttagtgtaacaaagttgtcgacagagattcaatcatagtctatgctgtaaa 10300194  T
Q  286 tat 288  Q
    |||    
T  10300193 tat 10300191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 188 - 288
Target Start/End: Complemental strand, 10320728 - 10320627
Alignment:
Q  188 atatgcacatattttctttaaaacatattcattatgaaatttgataa-tttagtgtaacaaagttgtcgacag-aaatcaatcatagtttatgctgtaaa 285  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |    
T  10320728 atatgcacat-ttttgtttaaaacatattcattatgaaatttgataactttagtgtaacaaagttgtcgacagaaaatcaatcatagtttatgctgtata 10320630  T
Q  286 tat 288  Q
    |||    
T  10320629 tat 10320627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 26953940 - 26953987
Alignment:
Q  54 gcaaggagagaggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||    
T  26953940 gcaaggagagacgacatgcatcaagaggaaacaccgacatcccaacta 26953987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 1051291 - 1051353
Alignment:
Q  39 atttttctttgctaagcaaggagagaggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    |||||| ||| ||||||||||||||||||||  |||||||||| | |||||||||||||||||    
T  1051291 attttttttttctaagcaaggagagaggacaaacatcaagagggaacaccgacatcccaacta 1051353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 101
Target Start/End: Complemental strand, 18517770 - 18517720
Alignment:
Q  51 taagcaaggagagaggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    ||||||||||||| ||||||||||||||||| | || ||||||||||||||    
T  18517770 taagcaaggagagtggacatgcatcaagaggcaacatcgacatcccaacta 18517720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 25760106 - 25760062
Alignment:
Q  57 aggagagaggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    ||||||||||||| ||||||||||| | |||||||||||||||||    
T  25760106 aggagagaggacaagcatcaagaggcaacaccgacatcccaacta 25760062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 26657770 - 26657708
Alignment:
Q  40 tttttctttgctaagcaaggagagaggacatgcatcaagaggaaccaccgacatcccaactaa 102  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26657770 tttttttttgctaagcaaggagagaggacatgcatcaagaggaaacaccgacatcccaactaa 26657708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 21593286 - 21593225
Alignment:
Q  40 tttttctttgctaagcaaggagagaggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    ||||| |||| ||||||||||||||||||| ||||||||||| | || |||||| |||||||    
T  21593286 tttttttttgataagcaaggagagaggacaggcatcaagaggcatcatcgacattccaacta 21593225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 24184726 - 24184787
Alignment:
Q  40 tttttctttgctaagcaaggagagaggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    ||||| |||||||| || ||||||||||||  |||||||||| | |||||||||||||||||    
T  24184726 tttttttttgctaaacagggagagaggacaaacatcaagagggaacaccgacatcccaacta 24184787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 23595467 - 23595419
Alignment:
Q  53 agcaaggagagaggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    ||||||||||||||||| ||||||||||| | || ||||||||||||||    
T  23595467 agcaaggagagaggacacgcatcaagaggcatcatcgacatcccaacta 23595419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 23604389 - 23604341
Alignment:
Q  53 agcaaggagagaggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    ||||||||||||||||| ||||||||||| | || ||||||||||||||    
T  23604389 agcaaggagagaggacacgcatcaagaggcatcatcgacatcccaacta 23604341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 18036809 - 18036852
Alignment:
Q  58 ggagagaggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    ||||||||||||  |||||||||||| |||||||||||||||||    
T  18036809 ggagagaggacaaacatcaagaggaaacaccgacatcccaacta 18036852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 101
Target Start/End: Original strand, 43848073 - 43848138
Alignment:
Q  36 tttatttttctttgctaagcaaggagagaggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    ||||||||| |||||||||| ||||||  ||||| |||||||| |||| || | ||||||||||||    
T  43848073 tttatttttttttgctaagccaggagattggacaggcatcaaggggaagcaacaacatcccaacta 43848138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 45268810 - 45268851
Alignment:
Q  40 tttttctttgctaagcaaggagagaggacatgcatcaagagg 81  Q
    ||||| |||| ||||||||||||||||||| |||||||||||    
T  45268810 tttttttttgataagcaaggagagaggacaggcatcaagagg 45268851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 16290946 - 16290898
Alignment:
Q  53 agcaaggagagaggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    |||||||||| ||||||  |||||||||| | |||||||||||||||||    
T  16290946 agcaaggagaaaggacaaacatcaagaggcaacaccgacatcccaacta 16290898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 2396 - 2336
Alignment:
Q  41 ttttctttgctaagcaaggagagaggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    |||| |||||||| ||||||||||||||| ||||||||||| | |||||||||||||||||    
T  2396 ttttttttgctaaacaaggagagaggacaagcatcaagagggaacaccgacatcccaacta 2336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 13570571 - 13570507
Alignment:
Q  37 ttatttttctttgctaagcaaggagagaggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    |||||||| | ||||||||| |||||||||||||||||||||||| | |||| ||||||||||||    
T  13570571 ttatttttttgtgctaagcagggagagaggacatgcatcaagagggaacacctacatcccaacta 13570507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 13575096 - 13575043
Alignment:
Q  48 tgctaagcaaggagagaggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    ||||||||| ||||||| |||||||||||||||| | |||||||||||||||||    
T  13575096 tgctaagcagggagagaagacatgcatcaagagggaacaccgacatcccaacta 13575043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 13577635 - 13577582
Alignment:
Q  48 tgctaagcaaggagagaggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    ||||||||| ||||||| |||||||||||||||| | |||||||||||||||||    
T  13577635 tgctaagcagggagagaagacatgcatcaagagggaacaccgacatcccaacta 13577582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 13566007 - 13565955
Alignment:
Q  49 gctaagcaaggagagaggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    |||||||| |||||||||||||||||||||||| | || ||||||||||||||    
T  13566007 gctaagcagggagagaggacatgcatcaagagggaacaacgacatcccaacta 13565955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 20899051 - 20899004
Alignment:
Q  54 gcaaggagagaggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    |||||||||||||||| ||||||||||| | |||||||||||||||||    
T  20899051 gcaaggagagaggacaagcatcaagaggcaacaccgacatcccaacta 20899004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 101
Target Start/End: Complemental strand, 11319561 - 11319511
Alignment:
Q  51 taagcaaggagagaggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    ||||| ||||||||||||||||||||||||||| |||| ||||| ||||||    
T  11319561 taagctaggagagaggacatgcatcaagaggaagcaccaacatctcaacta 11319511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 101
Target Start/End: Complemental strand, 12436046 - 12435996
Alignment:
Q  51 taagcaaggagagaggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    |||||||||||||||||||||||||| |||| | || ||||||||||||||    
T  12436046 taagcaaggagagaggacatgcatcaggaggcatcatcgacatcccaacta 12435996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 14641539 - 14641478
Alignment:
Q  40 tttttctttgctaagcaaggagagaggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    ||||| |||||||| || ||||||||||||  |||||||||| | |||||||||||||||||    
T  14641539 tttttttttgctaaacagggagagaggacaaacatcaagagggaacaccgacatcccaacta 14641478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 24617733 - 24617769
Alignment:
Q  65 ggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    ||||||||||||||||||| |||||||||||||||||    
T  24617733 ggacatgcatcaagaggaaacaccgacatcccaacta 24617769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 31633554 - 31633618
Alignment:
Q  37 ttatttttctttgctaagcaaggagagaggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    |||||||| ||||||||||||||||  ||||||  ||||  |||||| |||||||||||||||||    
T  31633554 ttatttttttttgctaagcaaggagtaaggacagacatcgggaggaaacaccgacatcccaacta 31633618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 3057040 - 3056978
Alignment:
Q  40 tttttctttgctaagcaaggagagaggacatgcatcaagaggaaccaccgacatcccaactaa 102  Q
    ||||| |||| ||||||||||||| ||||| ||||||||||  | || |||||||||||||||    
T  3057040 tttttttttgataagcaaggagagtggacaggcatcaagagacaacatcgacatcccaactaa 3056978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 24205546 - 24205501
Alignment:
Q  57 aggagagaggacatgcatcaagaggaaccaccgacatcccaactaa 102  Q
    ||||||||||||||||||| |||||||  | |||||||||||||||    
T  24205546 aggagagaggacatgcatcgagaggaaagaacgacatcccaactaa 24205501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 34338069 - 34338130
Alignment:
Q  40 tttttctttgctaagcaaggagagaggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    ||||| |||| |||| ||||||||| ||||  |||||||||||| || ||||||||||||||    
T  34338069 tttttttttgataagtaaggagagatgacagccatcaagaggaatcatcgacatcccaacta 34338130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 8483632 - 8483668
Alignment:
Q  65 ggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  8483632 ggacatgcatcaagaggaaacacggacatcccaacta 8483668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 15141904 - 15141940
Alignment:
Q  65 ggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    |||| |||||||||||||| |||||||||||||||||    
T  15141904 ggacgtgcatcaagaggaaacaccgacatcccaacta 15141940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 26592498 - 26592558
Alignment:
Q  41 ttttctttgctaagcaaggagagaggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    |||| ||| |||||||||||||||| ||||||||||||||  | ||| ||||| |||||||    
T  26592498 ttttttttcctaagcaaggagagagaacatgcatcaagagagaacactgacattccaacta 26592558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 30884486 - 30884442
Alignment:
Q  57 aggagagaggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    ||||||||||||||||||||||  ||| || ||||||||||||||    
T  30884486 aggagagaggacatgcatcaaggagaatcaacgacatcccaacta 30884442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 21711514 - 21711574
Alignment:
Q  41 ttttctttgctaagcaaggagagaggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    |||| |||||||| ||||||||||||||| ||||||||||| | |||||||||||||||||    
T  21711514 ttttttttgctaaacaaggagagaggacaagcatcaagagggaacaccgacatcccaacta 21711574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 15614840 - 15614779
Alignment:
Q  40 tttttctttgctaagcaaggagagaggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    ||||| |||||||| || |||||||||||| ||||||||||| | |||||||||||||||||    
T  15614840 tttttttttgctaaacagggagagaggacaagcatcaagagggaacaccgacatcccaacta 15614779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 2259390 - 2259433
Alignment:
Q  58 ggagagaggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    |||||| ||||||||||||||||||| |||||||||||||||||    
T  2259390 ggagagtggacatgcatcaagaggaaacaccgacatcccaacta 2259433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 35341991 - 35341930
Alignment:
Q  40 tttttctttgctaagcaaggagagaggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    ||||| |||| ||||||||||||||||||| ||||||||||  | || ||||||||||||||    
T  35341991 tttttttttggtaagcaaggagagaggacaggcatcaagagtcatcatcgacatcccaacta 35341930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 31329249 - 31329313
Alignment:
Q  37 ttatttttctttgctaagcaaggagagaggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    |||||||| |||  ||||||||||||||||||| ||||||||||| | || |||||| |||||||    
T  31329249 ttattttttttttataagcaaggagagaggacaggcatcaagaggcatcatcgacattccaacta 31329313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 88
Target Start/End: Complemental strand, 14480365 - 14480314
Alignment:
Q  37 ttatttttctttgctaagcaaggagagaggacatgcatcaagaggaaccacc 88  Q
    |||||||| || | ||||| ||||||||||||||||||||||||||| ||||    
T  14480365 ttattttttttggataagctaggagagaggacatgcatcaagaggaagcacc 14480314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 100
Target Start/End: Complemental strand, 25538887 - 25538844
Alignment:
Q  57 aggagagaggacatgcatcaagaggaaccaccgacatcccaact 100  Q
    |||||| |||||||||||||||||||| ||||||||| ||||||    
T  25538887 aggagataggacatgcatcaagaggaaacaccgacattccaact 25538844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 24123042 - 24122980
Alignment:
Q  39 atttttctttgctaagcaaggagagaggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    |||||| ||||||| |||||||||  |||||  |||||||||||| |||||||||| ||||||    
T  24123042 atttttttttgctaggcaaggagaagggacagacatcaagaggaaacaccgacatctcaacta 24122980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 4120622 - 4120561
Alignment:
Q  40 tttttctttgctaagcaaggagagaggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    ||||| |||||||| || |||||||||| |  |||||||||| | |||||||||||||||||    
T  4120622 tttttttttgctaaacagggagagaggataaacatcaagagggaacaccgacatcccaacta 4120561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 5784460 - 5784521
Alignment:
Q  40 tttttctttgctaagcaaggagagaggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    ||||| |||| ||||||||||||| ||||| ||||||||||| | || |||||| |||||||    
T  5784460 tttttttttgataagcaaggagagtggacaggcatcaagaggcatcatcgacattccaacta 5784521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 24765501 - 24765537
Alignment:
Q  65 ggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    |||||||||||||||||||  ||||||||||||||||    
T  24765501 ggacatgcatcaagaggaaataccgacatcccaacta 24765537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 29216709 - 29216648
Alignment:
Q  36 tttatttttctttgctaagcaaggagagaggacatgcatcaagaggaaccaccgacatcccaa 98  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||| | || |||||||||||    
T  29216709 tttattttt-tttgataagcaaggagagaggacatgcatcaagaggcatcatcgacatcccaa 29216648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 29330008 - 29329947
Alignment:
Q  36 tttatttttctttgctaagcaaggagagaggacatgcatcaagaggaaccaccgacatcccaa 98  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||| | || |||||||||||    
T  29330008 tttattttt-tttgataagcaaggagagaggacatgcatcaagaggcatcatcgacatcccaa 29329947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 101
Target Start/End: Complemental strand, 12102906 - 12102851
Alignment:
Q  46 tttgctaagcaaggagagaggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    |||| |||||||||||||||||||| |||||||||| | || ||||||||||||||    
T  12102906 tttgataagcaaggagagaggacatacatcaagaggcaacatcgacatcccaacta 12102851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 22169941 - 22169999
Alignment:
Q  40 tttttctttgctaagcaaggagagaggacatgcatcaagaggaaccaccgacatcccaa 98  Q
    ||||| |||| ||||||||||||||||||| ||||||||||| | || | |||||||||    
T  22169941 tttttttttgataagcaaggagagaggacaggcatcaagaggcatcatcaacatcccaa 22169999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 40926436 - 40926497
Alignment:
Q  40 tttttctttgctaagcaaggagagaggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    ||||| || |||||||| ||||  ||||||||||||| |||||| || ||||||||||||||    
T  40926436 ttttttttcgctaagcagggagtaaggacatgcatcaggaggaaacatcgacatcccaacta 40926497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 102
Target Start/End: Original strand, 11415951 - 11416012
Alignment:
Q  41 ttttctttgctaagcaaggagagaggacatgcatcaagaggaaccaccgacatcccaactaa 102  Q
    |||| ||||||| ||||||||||||||||  |||||| ||||| ||||||||||||||||||    
T  11415951 ttttttttgctaggcaaggagagaggacaaacatcaaaaggaaacaccgacatcccaactaa 11416012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 37005893 - 37005934
Alignment:
Q  57 aggagagaggacatgcatcaagaggaaccaccgacatcccaa 98  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  37005893 aggagagaggacatgcatcaagaggaagcaccgacatcccaa 37005934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 100
Target Start/End: Complemental strand, 41068963 - 41068900
Alignment:
Q  36 tttatttttctttgctaagcaaggagagaggacatgcatcaagaggaaccaccgacatcccaact 100  Q
    ||||||||| ||||||||||| ||||||| |||| |||||| |||| | ||||||||||||||||    
T  41068963 tttatttttttttgctaagcagggagaga-gacaggcatcatgaggcaacaccgacatcccaact 41068900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 101
Target Start/End: Original strand, 34657915 - 34657949
Alignment:
Q  67 acatgcatcaagaggaaccaccgacatcccaacta 101  Q
    ||||||||||||||||| |||||||||||||||||    
T  34657915 acatgcatcaagaggaaacaccgacatcccaacta 34657949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 8667073 - 8667134
Alignment:
Q  40 tttttctttgctaagcaaggagagaggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    ||||| |||| ||||||||||||| ||||| ||||||||||| | || |||||||| |||||    
T  8667073 tttttttttgataagcaaggagagtggacaggcatcaagaggcaacatcgacatcctaacta 8667134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 10032063 - 10032124
Alignment:
Q  40 tttttctttgctaagcaaggagagaggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    ||||| ||||||| |||||||||  ||||| ||||||||||||| |||||||||||||||||    
T  10032063 tttttttttgctaggcaaggagaagggacaggcatcaagaggaaacaccgacatcccaacta 10032124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 14986176 - 14986127
Alignment:
Q  50 ctaagcaaggagagaggacatgcatcaagaggaaccaccgacatcccaac 99  Q
    |||||||| ||||||||||||||||||||||||| |||||||||| ||||    
T  14986176 ctaagcaatgagagaggacatgcatcaagaggaaacaccgacatcacaac 14986127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 26505979 - 26505933
Alignment:
Q  46 tttgctaagcaaggagagaggacatgcatcaagaggaaccaccgaca 92  Q
    ||||||| |||||||||||||||||||||||||||||| ||| ||||    
T  26505979 tttgctaggcaaggagagaggacatgcatcaagaggaaacactgaca 26505933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 94
Target Start/End: Complemental strand, 19088964 - 19088923
Alignment:
Q  53 agcaaggagagaggacatgcatcaagaggaaccaccgacatc 94  Q
    ||||||||||||||||||||||||||||||| ||| ||||||    
T  19088964 agcaaggagagaggacatgcatcaagaggaaacactgacatc 19088923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 10433283 - 10433239
Alignment:
Q  57 aggagagaggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    |||||| |||||| ||||||||||||| |||||||||||||||||    
T  10433283 aggagaaaggacaagcatcaagaggaagcaccgacatcccaacta 10433239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 19054385 - 19054421
Alignment:
Q  65 ggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    ||||||||||||||||||| |||||||||||||||||    
T  19054385 ggacatgcatcaagaggaaacaccgacatcccaacta 19054421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 102
Target Start/End: Original strand, 2583065 - 2583116
Alignment:
Q  51 taagcaaggagagaggacatgcatcaagaggaaccaccgacatcccaactaa 102  Q
    |||||||||||||||||||  |||||||||| | || |||||||||||||||    
T  2583065 taagcaaggagagaggacagacatcaagaggcatcatcgacatcccaactaa 2583116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 16816227 - 16816270
Alignment:
Q  58 ggagagaggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    |||||| ||||||||||||||||||| |||| ||||||||||||    
T  16816227 ggagagtggacatgcatcaagaggaaacaccaacatcccaacta 16816270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 102
Target Start/End: Original strand, 20808742 - 20808793
Alignment:
Q  51 taagcaaggagagaggacatgcatcaagaggaaccaccgacatcccaactaa 102  Q
    ||||||||||||||||||| ||||||||||  | || |||||||||||||||    
T  20808742 taagcaaggagagaggacaggcatcaagagacatcatcgacatcccaactaa 20808793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 101
Target Start/End: Original strand, 10423787 - 10423837
Alignment:
Q  51 taagcaaggagagaggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    ||||||||||||| ||||| ||||||||||| | || ||||||||||||||    
T  10423787 taagcaaggagagtggacaagcatcaagaggcaacatcgacatcccaacta 10423837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 101
Target Start/End: Original strand, 27035838 - 27035888
Alignment:
Q  51 taagcaaggagagaggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    |||| |||||||||||||| ||||||||||| | || ||||||||||||||    
T  27035838 taagtaaggagagaggacaagcatcaagaggcatcatcgacatcccaacta 27035888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 101
Target Start/End: Original strand, 34528901 - 34528955
Alignment:
Q  47 ttgctaagcaaggagagaggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    |||||| |||||||||||| ||  ||||||||||||| || ||||||||||||||    
T  34528901 ttgctaggcaaggagagagaacgggcatcaagaggaaacagcgacatcccaacta 34528955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 33064795 - 33064856
Alignment:
Q  40 tttttctttgctaagcaaggagagaggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    ||||| |||||||||| ||||||  ||||| |||||||| |||| || ||||||||||||||    
T  33064795 tttttttttgctaagccaggagattggacaggcatcaaggggaagcaacgacatcccaacta 33064856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 93
Target Start/End: Original strand, 46391501 - 46391554
Alignment:
Q  40 tttttctttgctaagcaaggagagaggacatgcatcaagaggaaccaccgacat 93  Q
    ||||| ||||||||||||||||  ||||||||||||| |||||| ||| |||||    
T  46391501 tttttttttgctaagcaaggagtaaggacatgcatcaggaggaaacactgacat 46391554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 41574271 - 41574335
Alignment:
Q  37 ttatttttctttgctaagcaaggagagaggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    ||||| || ||||||| ||||||||| ||||||  |||||| ||||| |||| ||||||||||||    
T  41574271 ttattattttttgctaggcaaggagaaaggacagacatcaaaaggaaacaccaacatcccaacta 41574335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 209 - 256
Target Start/End: Original strand, 35631565 - 35631613
Alignment:
Q  209 aacatattcattatgaaatttgataa-tttagtgtaacaaagttgtcga 256  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  35631565 aacatattcattatgaaatttgataactttagtgtaacaaagttctcga 35631613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 1633393 - 1633346
Alignment:
Q  54 gcaaggagagaggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    |||||||||||||||||||||||||||||| ||||||||  |||||||    
T  1633393 gcaaggagagaggacatgcatcaagaggaaacaccgacaatccaacta 1633346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 101
Target Start/End: Complemental strand, 28780265 - 28780223
Alignment:
Q  59 gagagaggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    ||||||||||||||||||||||| | || ||||||||||||||    
T  28780265 gagagaggacatgcatcaagaggcaacatcgacatcccaacta 28780223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 1483 - 1530
Alignment:
Q  54 gcaaggagagaggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    |||||||||||||||| ||||||||||| | |||||||||||||||||    
T  1483 gcaaggagagaggacaagcatcaagaggcaacaccgacatcccaacta 1530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0437 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0437
Description:

Target: scaffold0437; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 14305 - 14366
Alignment:
Q  40 tttttctttgctaagcaaggagagaggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    ||||| |||| |||||||||||||||||||  |||||||||| | || ||||||||||||||    
T  14305 tttttttttgataagcaaggagagaggacagacatcaagaggcatcatcgacatcccaacta 14366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0437; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 11516 - 11456
Alignment:
Q  41 ttttctttgctaagcaaggagagaggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    |||| |||||||| || ||||||||||||  |||||||||| | |||||||||||||||||    
T  11516 ttttttttgctaaacagggagagaggacaaacatcaagagggaacaccgacatcccaacta 11456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 101
Target Start/End: Complemental strand, 633 - 583
Alignment:
Q  51 taagcaaggagagaggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    |||| |||||||||||||||||||||||||| | || |||||| |||||||    
T  633 taagtaaggagagaggacatgcatcaagaggcatcatcgacattccaacta 583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0292 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0292
Description:

Target: scaffold0292; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 101
Target Start/End: Complemental strand, 21312 - 21262
Alignment:
Q  51 taagcaaggagagaggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    ||||||||||||| ||||| ||||||||||| | || ||||||||||||||    
T  21312 taagcaaggagagtggacaggcatcaagaggcatcatcgacatcccaacta 21262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 101
Target Start/End: Complemental strand, 16288 - 16238
Alignment:
Q  51 taagcaaggagagaggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    ||||| |||||| |||||||| |||||||| || |||||||||||||||||    
T  16288 taagccaggagaaaggacatgtatcaagagaaagcaccgacatcccaacta 16238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 867 - 806
Alignment:
Q  40 tttttctttgctaagcaaggagagaggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    ||||| |||||||||||| |||| | ||||  |||||||||| | |||||||||||||||||    
T  867 tttttttttgctaagcaacgagaaatgacagacatcaagaggcaacaccgacatcccaacta 806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 7998 - 8034
Alignment:
Q  65 ggacatgcatcaagaggaaccaccgacatcccaacta 101  Q
    |||||||||||||||||||  ||||||||||||||||    
T  7998 ggacatgcatcaagaggaaataccgacatcccaacta 8034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University