View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17148_low_12 (Length: 348)
Name: NF17148_low_12
Description: NF17148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17148_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 20 - 338
Target Start/End: Original strand, 4390641 - 4390959
Alignment:
| Q |
20 |
gaaattcctccaataccaaattgggaacgttgtagcttttcctcgttcctaacattggcttagatagaatcttgcagtgnnnnnnnnnncattggctata |
119 |
Q |
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| T |
4390641 |
gaaattcctccaataccaaattgggaacgttgtagcttttcctcgttcctaacattggtttagatagaatcttgcagtgaaaaaaaaaacattggctata |
4390740 |
T |
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| Q |
120 |
gaatcttttgtatcttcccgaatggtctattgttgaattacttaaaggaggttaattggtcaaatgaaactcatagatttgaggatctttttgttgggaa |
219 |
Q |
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| T |
4390741 |
gaatcttttgtatcttcccgaatggtctattgttgaattacttaagggaggttaattggtcaaatgaaactcatagatttgaggatctttttgttgggaa |
4390840 |
T |
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| Q |
220 |
gttcgggagtagcaatgggctaaatgttcaggatcctaagagacttgaactttttgttgtagttgtgttatgtcaagagactagggtcgaagctgtttaa |
319 |
Q |
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| T |
4390841 |
gttcggtagcagcaatgggctaaatgttcaggatcctaagagacttgaactttttgttgtagttctgttatgtcaagagactagggtcgaagttgtttaa |
4390940 |
T |
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| Q |
320 |
ggtctcccttagccctttg |
338 |
Q |
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| T |
4390941 |
ggtctcccttaaccctttg |
4390959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 318
Target Start/End: Original strand, 38709316 - 38709353
Alignment:
| Q |
281 |
gttgtgttatgtcaagagactagggtcgaagctgttta |
318 |
Q |
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| T |
38709316 |
gttgtgttatgtcaagggactagggtcgaggctgttta |
38709353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 328
Target Start/End: Complemental strand, 26501058 - 26501011
Alignment:
| Q |
281 |
gttgtgttatgtcaagagactagggtcgaagctgtttaaggtctccct |
328 |
Q |
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| T |
26501058 |
gttgtgttctgtcaaaggactagggtcgaagttgtttaaggtctccct |
26501011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 338
Target Start/End: Original strand, 29685205 - 29685261
Alignment:
| Q |
281 |
gttgtgttatgtcaagagactagggtcgaagctgtttaaggtctcccttagccctttg |
338 |
Q |
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| T |
29685205 |
gttgtgttctgtcaaggaactagggtcgaagctgttt-agatctcccttagccatttg |
29685261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 333
Target Start/End: Original strand, 29685069 - 29685120
Alignment:
| Q |
281 |
gttgtgttatgtcaagagactagggtcgaagctgtttaaggtctcccttagcc |
333 |
Q |
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| T |
29685069 |
gttgtgttatgtcaagggactagggtcaaggctgttt-agttctcccttagcc |
29685120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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