View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17148_low_13 (Length: 338)
Name: NF17148_low_13
Description: NF17148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17148_low_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 48 - 330
Target Start/End: Original strand, 3206157 - 3206439
Alignment:
| Q |
48 |
cttggagggaaatcaacttatttaattttagtaccataaattgaaaatttgatgaatttaaaaatgtgaaatgatatgaattacatgcgtttctactcct |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3206157 |
cttggagggaaatcaacttatttaattttagttccataaattgaaaatttgatgaatttaaaaatgtgaaatgatatgaattacatgcgtttctactcct |
3206256 |
T |
|
| Q |
148 |
agttactattttttatgataaaatgagactttaagaaatgttgatttggcattgatagcttagaattgtgacacattggattggaggtctaaaacatgct |
247 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3206257 |
agttactattttttatgataaaattagactttaagaaatgttgattaggcattggtagcttagaattgtgacacattggattggaggtctaaaacatgct |
3206356 |
T |
|
| Q |
248 |
tcaagtttgtttattaaaattaagattaagataagatatgtaatcaatggttgatgtggattgaggggtccacagtctctgct |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3206357 |
tcaagtttgtttattaaaattaagattaagataagatatgtaatcaatggttgatgtggattgaggggtccatagtctctgct |
3206439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 324
Target Start/End: Original strand, 3236900 - 3236941
Alignment:
| Q |
283 |
atatgtaatcaatggttgatgtggattgaggggtccacagtc |
324 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||| |||| |
|
|
| T |
3236900 |
atatgcaatcaatggttgatgtggattgtggggtccatagtc |
3236941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 201
Target Start/End: Complemental strand, 31189294 - 31189138
Alignment:
| Q |
45 |
tttcttggagggaaatcaacttattt-aattttagtaccataaattgaaaatttgatgaatttaaaaat-gtgaaatgatatgaattacatgcgtttcta |
142 |
Q |
| |
|
|||||||||||||||||||||| ||| || ||| || ||||||||||||| |||||| ||||||||||| || ||| |||| |||||||| ||||| |
|
|
| T |
31189294 |
tttcttggagggaaatcaacttgttttaaattttgttccataaattgaaa-tttgat-aatttaaaaattgttaaaaagtatggattacatgtttttctg |
31189197 |
T |
|
| Q |
143 |
ctcctagttactattttttatgataaaatgagactttaagaaatgttgatttggcattg |
201 |
Q |
| |
|
|||||| ||||| |||| ||||||||||||| || ||||| || ||||||||||||| |
|
|
| T |
31189196 |
ctcctacttactgttttagatgataaaatgagctttcaagaattgatgatttggcattg |
31189138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 2775852 - 2775800
Alignment:
| Q |
189 |
tgatttggcattgatagcttagaattgtgacacattggattggaggtctaaaa |
241 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2775852 |
tgatttggcattggaggcttagaattttgacacattggattggaggtctaaaa |
2775800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University