View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17148_low_15 (Length: 315)

Name: NF17148_low_15
Description: NF17148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17148_low_15
NF17148_low_15
[»] chr5 (1 HSPs)
chr5 (1-297)||(10120960-10121257)


Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 10120960 - 10121257
Alignment:
Q  1 ccttttcttagaagtctcgtgaaaacatttattagtcggttttcacatggacttacacacnnnnnnnatccttttacttttatgaacatcatttcataac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||       |||||||||||||||||||||||||||||||||    
T  10120960 ccttttcttagaagtctcgtgaaaacatttattagtcggttttcacatggatttacacactttttttatccttttacttttatgaacatcatttcataac 10121059  T
Q  101 tatattttccagtgtgataacttcaagcttaaatgtgaccaattggaaatacttaaggcaataactatattttacttggattttgctaataaatgggaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10121060 tatattttccagtgtgataacttcaagcttaaatgtgaccaattggaaatagttaaggcaataactatattttacttggattttgctaataaatgggaat 10121159  T
Q  201 attaacaggttttaatcataagtcataacca-ttatcacactgttcacacaggaatctggccagaatccccaagttttagagacactgacatgccacc 297  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10121160 attaacaggttttaatcataagtcataaccatttatcacactattcatacaggaatctggccagaatccccaagttttagagacactgacatgccacc 10121257  T

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