View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17148_low_16 (Length: 314)
Name: NF17148_low_16
Description: NF17148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17148_low_16 |
 | |
|
| [»] scaffold1643 (1 HSPs) |
| | |
|
| [»] scaffold0425 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 28)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 17 - 299
Target Start/End: Original strand, 6140909 - 6141191
Alignment:
| Q |
17 |
acatttgatgaattatagctgcaaaactctgaaccaatgatctctattccatgacagcctgaaatggaaagcttcttgagagaagggaactgcccaagtg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6140909 |
acatttgatgaattatagctgcaaaactctgaaccaatgatctctattccatgacagcctgaaatggaaagcttcttgagagaagggaactgcccaagtg |
6141008 |
T |
|
| Q |
117 |
gtggcaactgggaacagtgtgtacatcccaacaattcaagagatactaaattgggtagatgatgatccccaagccaattaggaaagctactacctctgta |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6141009 |
gtggcaactgggaacagtgtgtacatcccaacaattcaagagatactaaattgggtagatgatgatccccaagccaattaggaaagctactacctctgta |
6141108 |
T |
|
| Q |
217 |
gtcattgatggtgagcctcatgaggtttctatttggttgaagagcctccaagaccgagacacgtgcttctgttactgagccat |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6141109 |
gtcattgatggtgagcctcatgaggtttctatttggttgaagagcctccaagaccgagacacgtgcttctgttactgagccat |
6141191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 299
Target Start/End: Complemental strand, 13271959 - 13271677
Alignment:
| Q |
17 |
acatttgatgaattatagctgcaaaactctgaaccaatgatctctattccatgacagcctgaaatggaaagcttcttgagagaagggaactgcccaagtg |
116 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
13271959 |
acatttgatggattatagccgcaaaactctgaaccaatgatctctattccatgacagccagaaatggaaagcttctcgagagaaggcaactgcccaagtg |
13271860 |
T |
|
| Q |
117 |
gtggcaactgggaacagtgtgtacatcccaacaattcaagagatactaaattgggtagatgatgatccccaagccaattaggaaagctactacctctgta |
216 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
13271859 |
gtggcaactgggaacagagtttacatcccaacaattcaagagatactaaattgggtagatgatgatccccaagccaatttggaaagctactacctctgta |
13271760 |
T |
|
| Q |
217 |
gtcattgatggtgagcctcatgaggtttctatttggttgaagagcctccaagaccgagacacgtgcttctgttactgagccat |
299 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
13271759 |
gtcattgatggtgagtctcatgaggtgtctatttggttgaagagcttccaagaccgagacacgtgcttcagttactaagccat |
13271677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 17 - 299
Target Start/End: Original strand, 6257825 - 6258107
Alignment:
| Q |
17 |
acatttgatgaattatagctgcaaaactctgaaccaatgatctctattccatgacagcctgaaatggaaagcttcttgagagaagggaactgcccaagtg |
116 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
6257825 |
acatttgatgaattatagccgcaaaactctgaaccaatgatctttattccatgacagcctgaaatggaaagcttcttgagagaagggaacttcccaagtg |
6257924 |
T |
|
| Q |
117 |
gtggcaactgggaacagtgtgtacatcccaacaattcaagagatactaaattgggtagatgatgatccccaagccaattaggaaagctactacctctgta |
216 |
Q |
| |
|
|||||||||||||||| ||| ||||||||| |||||||||||||||||||| ||||||| | |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6257925 |
gtggcaactgggaacaatgtttacatcccactaattcaagagatactaaatttggtagattaagatccccaagccaatttggaaagctactacctctgta |
6258024 |
T |
|
| Q |
217 |
gtcattgatggtgagcctcatgaggtttctatttggttgaagagcctccaagaccgagacacgtgcttctgttactgagccat |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| ||||||||| |
|
|
| T |
6258025 |
gtcattgatggtgagcctcatgaggtttctattaggttgaagagcctccaagaccgatacacgtgcttcagtttctgagccat |
6258107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 299
Target Start/End: Original strand, 6264305 - 6264590
Alignment:
| Q |
17 |
acatttgatgaattatagctgcaaaactctgaaccaatgatctctattccatgacagcctgaaatggaaagcttcttgagagaagggaactgcccaagtg |
116 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6264305 |
acatttgctgaattatagcggcaaaactctgaaccaatgatctctactccatgacagcctgaaatggaaagcttcttgagagaagggaactgcccaagtg |
6264404 |
T |
|
| Q |
117 |
gtggcaactgggaacagtgtgtacatcccaacaattcaagagatactaaattgggta---gatgatgatccccaagccaattaggaaagctactacctct |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6264405 |
gtggcaactgggaacagtgtgtacatcccaacaattcaagagataataaattggctagatgatgatgatccccaagccaattaggaaagctactacctct |
6264504 |
T |
|
| Q |
214 |
gtagtcattgatggtgagcctcatgaggtttctatttggttgaagagcctccaagaccgagacacgtgcttctgttactgagccat |
299 |
Q |
| |
|
||||||||||||| |||||||| |||| |||||||||||| | ||||||||||||||||||| || |||||| ||||||||||||| |
|
|
| T |
6264505 |
gtagtcattgatgctgagcctcgtgagatttctatttggtcgcagagcctccaagaccgagaaacatgcttcagttactgagccat |
6264590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 27 - 297
Target Start/End: Original strand, 6167524 - 6167794
Alignment:
| Q |
27 |
aattatagctgcaaaactctgaaccaatgatctctattccatgacagcctgaaatggaaagcttcttgagagaagggaactgcccaagtggtggcaactg |
126 |
Q |
| |
|
||||||||| | ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6167524 |
aattatagccgaaaaactctgaaccaatgttctctattccatgacagccggaaatggaaagcttcttgagagaatggaactgcccaagtggtggcaactg |
6167623 |
T |
|
| Q |
127 |
ggaacagtgtgtacatcccaacaattcaagagatactaaattgggtagatgatgatccccaagccaattaggaaagctactacctctgtagtcattgatg |
226 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6167624 |
ggaacagtgtttacatccaaacaattcaagagatactaaattgggtagatgatgatccccaagccaatttggaaagctactacctctgtagtcattgatg |
6167723 |
T |
|
| Q |
227 |
gtgagcctcatgaggtttctatttggttgaagagcctccaagaccgagacacgtgcttctgttactgagcc |
297 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||| ||| ||||||| |
|
|
| T |
6167724 |
gtgagcctcatgagatttctatttggttgaagagcctccaagaccaagagacgtgcttcagtttctgagcc |
6167794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 295
Target Start/End: Original strand, 6236348 - 6236626
Alignment:
| Q |
17 |
acatttgatgaattatagctgcaaaactctgaaccaatgatctctattccatgacagcctgaaatggaaagcttcttgagagaagggaactgcccaagtg |
116 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| | |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6236348 |
acatttgatgaattatagccgcaaaactctgaaccaatgaacgttattccatgacatcctgatatggaaagcttcttgagagaagggaactgcccaagtg |
6236447 |
T |
|
| Q |
117 |
gtggcaactgggaacagtgtgtacatcccaacaattcaagagatactaaattgggtagatgatgatccccaagccaattaggaaagctactacctctgta |
216 |
Q |
| |
|
|||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6236448 |
gtggcaactgggaacaatatttacatcccaacaattcaagagatactaaattgggtagatgatgatccccaagccaattaggaaagctactacctctgta |
6236547 |
T |
|
| Q |
217 |
gtcattgatggtgagcctcatgaggtttctatttggttgaagagcctccaagaccgagacacgtgcttctgttactgag |
295 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||| ||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
6236548 |
gtcattgatgccgagcctcatgagatttctatttggtcgaagagcctccaagatcgagacacgtgctttagttactgag |
6236626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 18 - 299
Target Start/End: Original strand, 6898712 - 6898993
Alignment:
| Q |
18 |
catttgatgaattatagctgcaaaactctgaaccaatgatctctattccatgacagcctgaaatggaaagcttcttgagagaagggaactgcccaagtgg |
117 |
Q |
| |
|
||||||||||||| |||| |||| ||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
6898712 |
catttgatgaattgtagccacaaatctctgtaccaatgatatctattccatcacagcctgaaatggaaagcttcttgagagagggtaactgcccaagtgg |
6898811 |
T |
|
| Q |
118 |
tggcaactgggaacagtgtgtacatcccaacaattcaagagatactaaattgggtagatgatgatccccaagccaattaggaaagctactacctctgtag |
217 |
Q |
| |
|
||||||||||||| || |||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||| ||||| ||||| ||||||||| |
|
|
| T |
6898812 |
gggcaactgggaacgaagtttacatcccaacaattctagagatactaaattgggtaaatgatgaaccccaagccaatttggaaatctactgcctctgtag |
6898911 |
T |
|
| Q |
218 |
tcattgatggtgagcctcatgaggtttctatttggttgaagagcctccaagaccgagacacgtgcttctgttactgagccat |
299 |
Q |
| |
|
|| |||||||| ||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||| |||||||| |||| |
|
|
| T |
6898912 |
tctttgatggttagcctcatgaggtttatatttggttgaagagcctctaagacagagacacgtgctttagttactgatccat |
6898993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 17 - 299
Target Start/End: Original strand, 7748625 - 7748907
Alignment:
| Q |
17 |
acatttgatgaattatagctgcaaaactctgaaccaatgatctctattccatgacagcctgaaatggaaagcttcttgagagaagggaactgcccaagtg |
116 |
Q |
| |
|
||||||||||||||||||| |||| ||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
7748625 |
acatttgatgaattatagccacaaatctctgcaccaataatctctattccatcgcagcctgaaatggaaagcttcttgagagagtggaactgcccaagtg |
7748724 |
T |
|
| Q |
117 |
gtggcaactgggaacagtgtgtacatcccaacaattcaagagatactaaattgggtagatgatgatccccaagccaattaggaaagctactacctctgta |
216 |
Q |
| |
|
||| ||||||||||| || ||||||||||||||||||||| ||||||||||||| ||||| ||| ||||||||||| ||||||||||| |||||||| |
|
|
| T |
7748725 |
atggtaactgggaacaaagtttacatcccaacaattcaagagtaactaaattgggtaaatgataatcgccaagccaatttggaaagctactgcctctgta |
7748824 |
T |
|
| Q |
217 |
gtcattgatggtgagcctcatgaggtttctatttggttgaagagcctccaagaccgagacacgtgcttctgttactgagccat |
299 |
Q |
| |
|
||| |||||||| |||||||||||||||||||||||||| |||||||| ||||| |||||| ||||||| |||||||| |||| |
|
|
| T |
7748825 |
gtctttgatggttagcctcatgaggtttctatttggttggagagcctctaagacagagacatgtgcttcagttactgatccat |
7748907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 28 - 303
Target Start/End: Complemental strand, 6723474 - 6723199
Alignment:
| Q |
28 |
attatagctgcaaaactctgaaccaatgatctctattccatgacagcctgaaatggaaagcttcttgagagaagggaactgcccaagtggtggcaactgg |
127 |
Q |
| |
|
|||||||| ||||||||||| |||||| |||||||||||| ||||||||||||||||||||||| |||| | |||||||||||||||||||| |||||| |
|
|
| T |
6723474 |
attatagccgcaaaactctgttccaatggtctctattccatcacagcctgaaatggaaagcttctcgagaaaggggaactgcccaagtggtggtaactgg |
6723375 |
T |
|
| Q |
128 |
gaacagtgtgtacatcccaacaattcaagagatactaaattgggtagatgatgatccccaagccaattaggaaagctactacctctgtagtcattgatgg |
227 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||||| |||| ||| ||||| |||||| ||||||||||| |||| ||||| ||||||| |
|
|
| T |
6723374 |
gaacagaatttacatcccaacaattcaagagatactaaattgggtaaatgacgatacccaacccaatttggaaagctactgcctccatagtctttgatgg |
6723275 |
T |
|
| Q |
228 |
tgagcctcatgaggtttctatttggttgaagagcctccaagaccgagacacgtgcttctgttactgagccattcat |
303 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||| |||||||| |||||||| |
|
|
| T |
6723274 |
tgagcctcatgaggtttttatttggttgaagagcctccaagacagagacatctgctttagttactgatccattcat |
6723199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 17 - 299
Target Start/End: Complemental strand, 6592759 - 6592477
Alignment:
| Q |
17 |
acatttgatgaattatagctgcaaaactctgaaccaatgatctctattccatgacagcctgaaatggaaagcttcttgagagaagggaactgcccaagtg |
116 |
Q |
| |
|
||||||||||||||||||| | |||| |||| |||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
6592759 |
acatttgatgaattatagccgtaaaattctgtaccaatgatctctattccatcacagcctgaaaaggaaagcttcttgagagaggggaactgcccaagtg |
6592660 |
T |
|
| Q |
117 |
gtggcaactgggaacagtgtgtacatcccaacaattcaagagatactaaattgggtagatgatgatccccaagccaattaggaaagctactacctctgta |
216 |
Q |
| |
|
||||||| | |||| | | ||||||||||||||||||| |||||||| ||||||| || | |||| ||||||||||| |||||||| || |||||||| |
|
|
| T |
6592659 |
gtggcaattcggaatggaatttacatcccaacaattcaagggatactaacttgggtaaataaagatcgccaagccaatttggaaagcttctgcctctgta |
6592560 |
T |
|
| Q |
217 |
gtcattgatggtgagcctcatgaggtttctatttggttgaagagcctccaagaccgagacacgtgcttctgttactgagccat |
299 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| ||||| ||| ||| || |||| || |||| |||||||| |
|
|
| T |
6592559 |
gtctttgatggtgagcctcatgaggtttctatttggttgaagaatctccatgacagaggcatgtgcctcagttattgagccat |
6592477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 17 - 294
Target Start/End: Original strand, 6915724 - 6916001
Alignment:
| Q |
17 |
acatttgatgaattatagctgcaaaactctgaaccaatgatctctattccatgacagcctgaaatggaaagcttcttgagagaagggaactgcccaagtg |
116 |
Q |
| |
|
|||||||||||||| |||| | ||||||| ||||||||| |||||||||| |||||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
6915724 |
acatttgatgaattgtagccatagaactctgtaccaatgatttctattccatcacagcctgaaataaaaagcttcttgagagaggggaactgcccaagtg |
6915823 |
T |
|
| Q |
117 |
gtggcaactgggaacagtgtgtacatcccaacaattcaagagatactaaattgggtagatgatgatccccaagccaattaggaaagctactacctctgta |
216 |
Q |
| |
|
| ||||||||||||| | || ||||||||||||||||||||||||||||||| |||| ||||| ||| |||||||||| ||||||||||| |||| || |
|
|
| T |
6915824 |
gcggcaactgggaacggagtttacatcccaacaattcaagagatactaaatttggtaaatgataatctccaagccaatatggaaagctactgcctccata |
6915923 |
T |
|
| Q |
217 |
gtcattgatggtgagcctcatgaggtttctatttggttgaagagcctccaagaccgagacacgtgcttctgttactga |
294 |
Q |
| |
|
||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||| |||||||| |
|
|
| T |
6915924 |
gtctttgatggtgagcctcatgagatttctatttggttgaagagcctccaagatagagatttgtgcttcagttactga |
6916001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 17 - 276
Target Start/End: Complemental strand, 6850685 - 6850427
Alignment:
| Q |
17 |
acatttgatgaattatagctgcaaaactctgaaccaatgatctctattccatgacagcctgaaatggaaagcttcttgagagaagggaactgcccaagtg |
116 |
Q |
| |
|
|||||||||||||| |||| | ||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||| ||||||||| |
|
|
| T |
6850685 |
acatttgatgaattgtagccgtaaaactctggaccaatgatctctattccatcacagcctgaaatggaaagattcttgagagaggggaacagcccaagtg |
6850586 |
T |
|
| Q |
117 |
gtggcaactgggaacagtgtgtacatcccaacaattcaagagatactaaattgggtagatgatgatccccaagccaattaggaaagctactacctctgta |
216 |
Q |
| |
|
||| ||||||||| |||| ||||||||||||| |||||||||||||||||||||| ||||| |||||| ||||||| || |||||||| |||| ||| |
|
|
| T |
6850585 |
atggaaactgggaatggtgtttacatcccaacaa-tcaagagatactaaattgggtaaatgataatccccgagccaatatgggaagctactgcctcggta |
6850487 |
T |
|
| Q |
217 |
gtcattgatggtgagcctcatgaggtttctatttggttgaagagcctccaagaccgagac |
276 |
Q |
| |
|
||| |||||||| |||||||||||||||| ||||||||||||||| |||||||| ||||| |
|
|
| T |
6850486 |
gtctttgatggttagcctcatgaggtttccatttggttgaagagcttccaagacagagac |
6850427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 17 - 299
Target Start/End: Original strand, 6881139 - 6881421
Alignment:
| Q |
17 |
acatttgatgaattatagctgcaaaactctgaaccaatgatctctattccatgacagcctgaaatggaaagcttcttgagagaagggaactgcccaagtg |
116 |
Q |
| |
|
|||| |||||||||||||| | |||||||| |||||| || |||||||||| ||||| |||||||||| |||||||||||| || ||||||||||| | |
|
|
| T |
6881139 |
acatctgatgaattatagccgagaaactctgtaccaataatttctattccatcacagcttgaaatggaacacttcttgagagagggaaactgcccaagcg |
6881238 |
T |
|
| Q |
117 |
gtggcaactgggaacagtgtgtacatcccaacaattcaagagatactaaattgggtagatgatgatccccaagccaattaggaaagctactacctctgta |
216 |
Q |
| |
|
|||||||||||||| | | ||||||||||||||||||||||||||||||| |||| |||| ||||||||||||| || |||||||||| |||||||| |
|
|
| T |
6881239 |
gtggcaactgggaatggattttacatcccaacaattcaagagatactaaatttggtaaatgacgatccccaagccagtttggaaagctaccgcctctgta |
6881338 |
T |
|
| Q |
217 |
gtcattgatggtgagcctcatgaggtttctatttggttgaagagcctccaagaccgagacacgtgcttctgttactgagccat |
299 |
Q |
| |
|
||| |||||||| || ||| |||||||| ||||||||||||||||||||||||| ||| | ||||||| |||||||| |||| |
|
|
| T |
6881339 |
gtctttgatggttagactcgtgaggtttatatttggttgaagagcctccaagacagaggcttgtgcttcagttactgatccat |
6881421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 175 - 295
Target Start/End: Original strand, 6244074 - 6244194
Alignment:
| Q |
175 |
atgatgatccccaagccaattaggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctatttggttgaagagcctccaagaccgag |
274 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||| |
|
|
| T |
6244074 |
atgatgatccccaagccaatttggaaagctactacctctgtagtcattgatggtgagcctcacgaggttactatttggttgaagagcctccaagatagag |
6244173 |
T |
|
| Q |
275 |
acacgtgcttctgttactgag |
295 |
Q |
| |
|
||| ||||||| ||| ||||| |
|
|
| T |
6244174 |
acatgtgcttcagtttctgag |
6244194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 6243942 - 6244073
Alignment:
| Q |
19 |
atttgatgaattatagctgcaaaactctgaaccaatgatctctattccatgacagcctgaaatggaaagcttcttgagagaagggaactgcccaagtggt |
118 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| || | || |
|
|
| T |
6243942 |
atttgatgaattatagcggcaaaactctgaaccaatgatacctattccatgacagcctgaaatggaaagcttcttgagagatgggaactgcttaatttgt |
6244041 |
T |
|
| Q |
119 |
ggcaactgggaacagtgtgtacatcccaacaa |
150 |
Q |
| |
|
||||||| ||||||| || ||||||||||||| |
|
|
| T |
6244042 |
ggcaacttggaacagagtttacatcccaacaa |
6244073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 270
Target Start/End: Original strand, 5279286 - 5279535
Alignment:
| Q |
21 |
ttgatgaattatagctgcaaaactctgaaccaatgatctctattccatgacagcctgaaatggaaagcttcttgagagaagggaactgcccaagtggtgg |
120 |
Q |
| |
|
||||||||||||||| |||||||| ||| || ||||||||||||| ||| ||||||| ||||||| ||| ||||| || | ||||||||||||||| |
|
|
| T |
5279286 |
ttgatgaattatagccataaaactcttcaccgataatctctattccatcacattctgaaatagaaagctccttaagagagggaagctgcccaagtggtgg |
5279385 |
T |
|
| Q |
121 |
caactgggaacagtgtgtacatcccaacaattcaagagatactaaattgggtagatgatgatccccaagccaattaggaaagctactacctctgtagtca |
220 |
Q |
| |
|
|||||| |||| | ||||| || |||||| |||||||||||| ||| || | ||||||||||||| ||||||| | | ||||||||||| |
|
|
| T |
5279386 |
aaactggaaacaaaatccacatctattcagttcaagggatactaaattgagtaaataacagtccccaagccaatgtggaaagccagtgcctctgtagtcc |
5279485 |
T |
|
| Q |
221 |
ttgatggtgagcctcatgaggtttctatttggttgaagagcctccaagac |
270 |
Q |
| |
|
| |||| |||| || ||||||| |||||||||| ||| |||||||||| |
|
|
| T |
5279486 |
tcgatgatgagactattgaggttgctatttggttcgagaacctccaagac |
5279535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 132
Target Start/End: Original strand, 5262410 - 5262521
Alignment:
| Q |
21 |
ttgatgaattatagctgcaaaactctgaaccaatgatctctattccatgacagcctgaaatggaaagcttcttgagagaagggaactgcccaagtggtgg |
120 |
Q |
| |
|
||||||||||||||| |||||||| ||| |||||||||||||||| ||| ||||||| ||||||| || ||||| || | || |||||||||||| |
|
|
| T |
5262410 |
ttgatgaattatagccataaaactcttcaccgatgatctctattccataacattctgaaatagaaagctctttaagagagggaagcttcccaagtggtgg |
5262509 |
T |
|
| Q |
121 |
caactgggaaca |
132 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
5262510 |
caaccgggaaca |
5262521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 52 - 270
Target Start/End: Original strand, 5248814 - 5249032
Alignment:
| Q |
52 |
aatgatctctattccatgacagcctgaaatggaaagcttcttgagagaagggaactgcccaagtggtggcaactgggaacagtgtgtacatcccaacaat |
151 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||||||| | || ||| | ||| ||||||||| |||||||| | |||||| | || |
|
|
| T |
5248814 |
aatgatctctattccatgacaacctgaaatataaagcttcttgagatagggaaacaactcaaatggtggcaaatgggaacaaaattcacatcctaccaga |
5248913 |
T |
|
| Q |
152 |
tcaagagatactaaattgggtagatgatgatccccaagccaattaggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctatttg |
251 |
Q |
| |
|
|| |||||| |||||||| | |||| | |||||||||| || ||||||||| | |||| |||| |||||||| ||| | | ||||| ||||||| |
|
|
| T |
5248914 |
tccagagattctaaattgaacaaatgactacccccaagccagtttggaaagctagtgcctcgatagtgtttgatggtcagcatattaaggttactatttg |
5249013 |
T |
|
| Q |
252 |
gttgaagagcctccaagac |
270 |
Q |
| |
|
||| ||| ||||||||||| |
|
|
| T |
5249014 |
gttcaagggcctccaagac |
5249032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 270
Target Start/End: Original strand, 6734604 - 6734820
Alignment:
| Q |
51 |
caatgatctctattccatgacagcctgaaatggaaagcttcttgagagaagggaactgcccaagtggtggcaactgggaacagtgtgtacatcccaacaa |
150 |
Q |
| |
|
||||||||| |||||| | |||| | |||||||||| |||||||||||||||| || |||||| |||||| |||||| | |||| || || |
|
|
| T |
6734604 |
caatgatctttattccttcacagtcataaatggaaagtttcttgagagaagggagttgtccaagtattggcaaacaggaaca---tctacaaccattcag |
6734700 |
T |
|
| Q |
151 |
ttcaagagatactaaattgggtagatgatgatccccaagccaattaggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctattt |
250 |
Q |
| |
|
||||||||||||||| ||| ||| |||| | ||| |||||||| ||||| ||||||||| |||||| ||||| ||||| || | | ||| |||||| |
|
|
| T |
6734701 |
ttcaagagatactaagttgcgtaaatgactaccccttagccaatttggaaatctactacctttgtagtgtgtgatgttgagcttcttcaagttgctattt |
6734800 |
T |
|
| Q |
251 |
ggttgaagagcctccaagac |
270 |
Q |
| |
|
|||| |||||||||||||| |
|
|
| T |
6734801 |
ggttttagagcctccaagac |
6734820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 132
Target Start/End: Complemental strand, 4390309 - 4390229
Alignment:
| Q |
52 |
aatgatctctattccatgacagcctgaaatggaaagcttcttgagagaagggaactgcccaagtggtggcaactgggaaca |
132 |
Q |
| |
|
|||||||||||||||| |||||| |||||| |||| || |||||| | || |||| | ||| |||||||||||||||||| |
|
|
| T |
4390309 |
aatgatctctattccaggacagcttgaaatacaaagattattgagatagggaaacttctcaaatggtggcaactgggaaca |
4390229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 122
Target Start/End: Original strand, 5297401 - 5297473
Alignment:
| Q |
50 |
ccaatgatctctattccatgacagcctgaaatggaaagcttcttgagagaagggaactgcccaagtggtggca |
122 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||| ||||| | |||||||| || ||||||||||||||||| |
|
|
| T |
5297401 |
ccaatgctctctattccatggcagcctgaaattgaaagttctttgagagagcagagctgcccaagtggtggca |
5297473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 270
Target Start/End: Complemental strand, 6528157 - 6528041
Alignment:
| Q |
154 |
aagagatactaaattgggtagatgatgatccccaagccaattaggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctatttggt |
253 |
Q |
| |
|
|||||||||||| ||||||| |||| | ||| |||||||| ||||| ||||||||| |||||| ||||| ||||| || | | ||| ||||||||| |
|
|
| T |
6528157 |
aagagatactaagttgggtaaatgactaccccttagccaatttggaaatctactacctttgtagtgtgtgatgttgagcttcttcaagttgctatttggt |
6528058 |
T |
|
| Q |
254 |
tgaagagcctccaagac |
270 |
Q |
| |
|
|| | |||||||||||| |
|
|
| T |
6528057 |
tgtatagcctccaagac |
6528041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 267
Target Start/End: Complemental strand, 6555826 - 6555610
Alignment:
| Q |
51 |
caatgatctctattccatgacagcctgaaatggaaagcttcttgagagaagggaactgcccaagtggtggcaactgggaacagtgtgtacatcccaacaa |
150 |
Q |
| |
|
||||||||| |||||| | |||| | |||||||||| |||||||||||||||| || ||||||| |||||| |||||| |||| ||| | |
|
|
| T |
6555826 |
caatgatctttattccttcacagtcataaatggaaagtttcttgagagaagggagttgtccaagtgttggcaaacaggaacataacttacaacccttaag |
6555727 |
T |
|
| Q |
151 |
ttcaagagatactaaattgggtagatgatgatccccaagccaattaggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctattt |
250 |
Q |
| |
|
||||||||||||||| ||||||| |||| | ||| |||||||| ||||| ||||||||| |||||| | ||| ||||| || | | ||| |||||| |
|
|
| T |
6555726 |
ttcaagagatactaagttgggtaaatgacaaccccttagccaatttggaaatctactacctttgtagtgtgtaatgttgagcttcttcaagttgctattt |
6555627 |
T |
|
| Q |
251 |
ggttgaagagcctccaa |
267 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
6555626 |
ggttttagagcctccaa |
6555610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 270
Target Start/End: Original strand, 8453392 - 8453508
Alignment:
| Q |
154 |
aagagatactaaattgggtagatgatgatccccaagccaattaggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctatttggt |
253 |
Q |
| |
|
|||||||||||| || |||| ||||| | ||| | |||||| ||||||||| ||||| |||| | |||||| |||||| | | ||||||||||||| |
|
|
| T |
8453392 |
aagagatactaagtttggtaaatgataaccccttatccaatttggaaagctattacctttgtattttgagatggtaagcctcttcaagtttctatttggt |
8453491 |
T |
|
| Q |
254 |
tgaagagcctccaagac |
270 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
8453492 |
tggagagcctccaagac |
8453508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 270
Target Start/End: Complemental strand, 8570191 - 8570111
Alignment:
| Q |
190 |
ccaattaggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctatttggttgaagagcctccaagac |
270 |
Q |
| |
|
|||||| ||||||||||| || |||||| |||||||||||||| | | ||| ||||||||||||||||| |||||||| |
|
|
| T |
8570191 |
ccaatttggaaagctactgccattgtagtatgtgatggtgagcctcttcaagttgctatttggttgaagagcatccaagac |
8570111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 270
Target Start/End: Original strand, 8588563 - 8588610
Alignment:
| Q |
223 |
gatggtgagcctcatgaggtttctatttggttgaagagcctccaagac |
270 |
Q |
| |
|
|||||| |||||| | | |||||||||||||||||||||||||||||| |
|
|
| T |
8588563 |
gatggtaagcctcttcaagtttctatttggttgaagagcctccaagac |
8588610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 124
Target Start/End: Original strand, 8453277 - 8453362
Alignment:
| Q |
39 |
aaaactctgaaccaatgatctctattccatgacagcctgaaatggaaagcttcttgagagaagggaactg-cccaagtggtggcaac |
124 |
Q |
| |
|
|||||||| ||| ||||||| |||||||| |||| ||||||| |||||| |||||||| ||||| | || |||||||||||||||| |
|
|
| T |
8453277 |
aaaactcttcacctatgatctttattccatcacagtctgaaatagaaagcatcttgaga-aaggggagtgtcccaagtggtggcaac |
8453362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 123
Target Start/End: Complemental strand, 6521514 - 6521442
Alignment:
| Q |
51 |
caatgatctctattccatgacagcctgaaatggaaagcttcttgagagaagggaactgcccaagtggtggcaa |
123 |
Q |
| |
|
||||||||| |||||| | |||| | |||||||||| |||||||||||||||| || ||||||| |||||| |
|
|
| T |
6521514 |
caatgatctttattccttcacagtcataaatggaaagtttcttgagagaagggagttgtccaagtgttggcaa |
6521442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 114; Significance: 8e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 158 - 299
Target Start/End: Complemental strand, 35141634 - 35141493
Alignment:
| Q |
158 |
gatactaaattgggtagatgatgatccccaagccaattaggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctatttggttgaa |
257 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35141634 |
gatactaaattgggtaaatgatgatccccaagccaatttggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctatttggctgaa |
35141535 |
T |
|
| Q |
258 |
gagcctccaagaccgagacacgtgcttctgttactgagccat |
299 |
Q |
| |
|
||| |||||| || ||||||| |||||||||||||||||||| |
|
|
| T |
35141534 |
gagactccaacactgagacacatgcttctgttactgagccat |
35141493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1643 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1643
Description:
Target: scaffold1643; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 132
Target Start/End: Original strand, 825 - 908
Alignment:
| Q |
49 |
accaatgatctctattccatgacagcctgaaatggaaagcttcttgagagaagggaactgcccaagtggtggcaactgggaaca |
132 |
Q |
| |
|
||||||||||| |||||||| ||| |||||| ||||| |||||||||||||| | ||||||||||||||| || |||||||| |
|
|
| T |
825 |
accaatgatctttattccatcacaatatgaaatagaaagattcttgagagaaggaagctgcccaagtggtggaaaatgggaaca |
908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 270
Target Start/End: Complemental strand, 8874 - 8655
Alignment:
| Q |
51 |
caatgatctctattccatgacagcctgaaatggaaagcttcttgagagaagggaactgcccaagtggtggcaactgggaacagtgtgtacatcccaacaa |
150 |
Q |
| |
|
||||||||| |||||| | |||| | |||||||||| |||||||||||||||| || ||||||| |||||| |||||| ||| ||| || |
|
|
| T |
8874 |
caatgatctttattccttcacagtcataaatggaaagtttcttgagagaagggagttgtccaagtgctggcaaacaggaacataacccacaacccttcag |
8775 |
T |
|
| Q |
151 |
ttcaagagatactaaattgggtagatgatgatccccaagccaattaggaaagctactacctctgtagtcat-tgatggtgagcctcatgaggtttctatt |
249 |
Q |
| |
|
|| |||||||||||| || |||| |||| | ||| |||||||| ||||||||||||||| ||||| ||| ||||| ||||| || | | ||| ||||| |
|
|
| T |
8774 |
ttgaagagatactaagttcggtaaatgactaccccttagccaatttggaaagctactacctttgtag-catgtgatgttgagcttcttcaagttgctatt |
8676 |
T |
|
| Q |
250 |
tggttgaagagcctccaagac |
270 |
Q |
| |
|
|||||| | |||||||||||| |
|
|
| T |
8675 |
tggttgtaaagcctccaagac |
8655 |
T |
|
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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 270
Target Start/End: Complemental strand, 6574564 - 6574482
Alignment:
| Q |
188 |
agccaattaggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctatttggttgaagagcctccaagac |
270 |
Q |
| |
|
|||||||| |||||||| || || |||||| ||||||||||||||| ||||| ||||||||| |||||||||| ||||| |
|
|
| T |
6574564 |
agccaatttggaaagctgctgccattgtagtatttgatggtgagcctctgtaggttgctatttggtcgaagagcctcaaagac |
6574482 |
T |
|
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