View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17148_low_18 (Length: 288)
Name: NF17148_low_18
Description: NF17148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17148_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 283
Target Start/End: Complemental strand, 53425811 - 53425547
Alignment:
| Q |
19 |
aatgggtcctattccacccggttggaaaggcacatgcatggcctcaaaagatttcaattcatccaactgtaacaggtgtgttgtgaataagatgtttttc |
118 |
Q |
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| T |
53425811 |
aatgggtcctattccacccagttggaaaggcatctgcatgacatcaaaagacttcaactcatccaactgtaacaggtgtgttgtgaataagatgtttttc |
53425712 |
T |
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| Q |
119 |
atcgatctgaattgattatgattttgtaacaaaatattacataaatttaaccaaaccctgctaatcaatatgtgattgatttgaatttctctctcacata |
218 |
Q |
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| T |
53425711 |
atcgatctgaattgattatgattttgtaacaaaatattaaataaatttaaccaaaccctgctaatcaatatgtgattgatttgaatttctctctcacata |
53425612 |
T |
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| Q |
219 |
aatcgagtcaagccaacctgttatatcctatacattatttctatgtttacgctgatgatgtccat |
283 |
Q |
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| T |
53425611 |
aatcgagtcaagccaacctgttatatcccatacattatttctatgtttacgcttatgaggtccat |
53425547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 53434101 - 53434025
Alignment:
| Q |
19 |
aatgggtcctattccacccggttggaaaggcacatgcatggcctcaaaagatttcaattcatccaactgtaacaggt |
95 |
Q |
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| T |
53434101 |
aatgggtcctattccacccggttggaaaggcacatgcatggcctcaaaagatttcaactcatccaactgtaacaggt |
53434025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 26098802 - 26098735
Alignment:
| Q |
28 |
tattccacccggttggaaaggcacatgcatggcctcaaaagatttcaattcatccaactgtaacaggt |
95 |
Q |
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| T |
26098802 |
tattccaaccggttggaatggtacctgcatgacatcaaaagatttcaactcatccaactgtaacaggt |
26098735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 48371302 - 48371378
Alignment:
| Q |
19 |
aatgggtcctattccacccggttggaaaggcacatgcatggcctcaaaagatttcaattcatccaactgtaacaggt |
95 |
Q |
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||||| |||||||||| ||||||||||||||| |||||| | ||||| || ||||| ||||| || ||||| |||| |
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| T |
48371302 |
aatggatcctattccatccggttggaaaggcatttgcatgacatcaaatgacttcaactcatctaattgtaataggt |
48371378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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