View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17148_low_2 (Length: 598)
Name: NF17148_low_2
Description: NF17148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17148_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 519; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 1 - 585
Target Start/End: Original strand, 8072704 - 8073304
Alignment:
| Q |
1 |
taagaaccgaaaccaacaacaatttcaaatgcaactgcaaatgtttccaaatcatcagaaccataattatggaccgtcctcttcttctgttacattgggc |
100 |
Q |
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| T |
8072704 |
taagaaccaaaaccaacaacaatttcaaatgcaactgcaaatgtttccaaatcatcagaaccataattatggaccgtcctcttcttctgttacattgggc |
8072803 |
T |
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| Q |
101 |
atcaacatcaacaacaatgataataatggcctaatagctcttcctgatctgaactcaacagcagaagagttgatcgacgcggcctcgtatcaacagttcg |
200 |
Q |
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| T |
8072804 |
atcaacatcaacaacaatgataataatggcctaatagctcttcctgatctgaactcaacagcagaagagttgatcgacgcggcctcgtatcaacagttcg |
8072903 |
T |
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| Q |
201 |
atgaaactacaacaaatagagttttggcagcagctcaagctaggaagacaaggcttcaaattttcaggctcaagaaaccttttggaaacaatagcaaaca |
300 |
Q |
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| T |
8072904 |
atgaaactacaacaaatagagttttggcagcagctcaagctaggaagacaaggcttcaaattttcaggctcaagaaaccttttggaaacaatagcaaaca |
8073003 |
T |
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| Q |
301 |
atatttaatttgatgtatattttatttccttcttagtttcctctctcttttagaaattcaaatgtactgaaaaggaagttttgtaaagatatttg----- |
395 |
Q |
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| T |
8073004 |
atatttaatttgatgtatattttatttccttcttagtttcctctctcttttagaaattcaaatgtactgaaaaggaagttttgtaaagatatttgatttt |
8073103 |
T |
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| Q |
396 |
-----------annnnnnngtgtgatttaaacatggtattttatggcatgaagttattgcaccgtgaaatgtcatatgaaattgaaacatctggtttgtg |
484 |
Q |
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| T |
8073104 |
tttaatgcatgatttttttgtgtgatttaaacatggtattttatggcatgaagttattgcaccgtgaaatgtcatatgaaattgaaacatctggtttgtg |
8073203 |
T |
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| Q |
485 |
aggtttgatttgctgagggcttgaacaaagtttaatttgacttttgatagaatatatactgttttaaaactaggtacatttattaatttgtgggaaaatt |
584 |
Q |
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| T |
8073204 |
aggtttgatttgctgagggcttgaacaaagtttaatttgacttttgatagaatatatactgttttaaaactaggtacatttattaatttgtgtgaaaatt |
8073303 |
T |
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| Q |
585 |
g |
585 |
Q |
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| T |
8073304 |
g |
8073304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 227 - 360
Target Start/End: Original strand, 8069323 - 8069454
Alignment:
| Q |
227 |
gcagcagctcaagctaggaagacaaggcttcaaattttcaggctcaagaaaccttttggaaacaatagcaaacaatatttaatttgatgtatattttatt |
326 |
Q |
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|||||||||||||||||| | | ||||||||| | ||||||||||| ||||||||||||||||| || |||||| ||| | |||||||| ||||||||| |
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| T |
8069323 |
gcagcagctcaagctaggcaaagaaggcttcagaaattcaggctcaaaaaaccttttggaaacaagagtaaacaacattcattttgatgtttattttatt |
8069422 |
T |
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| Q |
327 |
tccttcttagtttcctctctcttttagaaattca |
360 |
Q |
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| T |
8069423 |
tcctttttagtttc--ctctcttttagaaattca |
8069454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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