View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17148_low_20 (Length: 286)
Name: NF17148_low_20
Description: NF17148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17148_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 25 - 271
Target Start/End: Original strand, 6280501 - 6280747
Alignment:
| Q |
25 |
gtccagactttataataatcctggctccgccacttatcacatgccacaatttataactatgattcaagctatcaaagatatatgtaagaatttgtcaaaa |
124 |
Q |
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| T |
6280501 |
gtccagactttataataatcctggctccgccacttatcacatgccacaatttataactatgattcaagctatcaaagatatatgcaagaatttgtcaaaa |
6280600 |
T |
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| Q |
125 |
atgaaagatatatgcaaaaagattgttacttacaaagcatcaacaatggatctatgattcagaaatgttgcatgtaaagagacagatcccttactgttat |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6280601 |
atgaaagatatatgcaaaaagattgttacttacaaagcatcaacaatggatctatgattcagaaatgttgcatgtaaagagacagatcccttactgttat |
6280700 |
T |
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| Q |
225 |
cactgacaaaatatttaccagccaatgatagttcataaagtctttca |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6280701 |
cactgacaaaatatttaccagccaatgatagttcataaagtctttca |
6280747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 58
Target Start/End: Complemental strand, 54546888 - 54546857
Alignment:
| Q |
27 |
ccagactttataataatcctggctccgccact |
58 |
Q |
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| T |
54546888 |
ccagactttataataatcctggctccgccact |
54546857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 271
Target Start/End: Original strand, 6285300 - 6285348
Alignment:
| Q |
223 |
atcactgacaaaatatttaccagccaatgatagttcataaagtctttca |
271 |
Q |
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| T |
6285300 |
atcattgacaaaatatttaccaaccaatgacaattcataaactctttca |
6285348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 58
Target Start/End: Complemental strand, 41853114 - 41853083
Alignment:
| Q |
27 |
ccagactttataataatcctggctccgccact |
58 |
Q |
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| T |
41853114 |
ccagactttataataatcctggctccgccact |
41853083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 58
Target Start/End: Original strand, 28321848 - 28321879
Alignment:
| Q |
27 |
ccagactttataataatcctggctccgccact |
58 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
28321848 |
ccagactttataataatcctggctccgccact |
28321879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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