View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17148_low_22 (Length: 279)

Name: NF17148_low_22
Description: NF17148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17148_low_22
NF17148_low_22
[»] chr3 (25 HSPs)
chr3 (8-269)||(6280231-6280492)
chr3 (8-154)||(10839367-10839514)
chr3 (27-139)||(22845364-22845476)
chr3 (9-144)||(1781757-1781893)
chr3 (10-136)||(8926762-8926889)
chr3 (27-153)||(43347324-43347451)
chr3 (13-136)||(54546904-54547027)
chr3 (27-171)||(46685753-46685897)
chr3 (8-128)||(48206848-48206968)
chr3 (8-136)||(33103738-33103866)
chr3 (9-155)||(36539627-36539774)
chr3 (12-136)||(51336208-51336332)
chr3 (9-153)||(19649360-19649506)
chr3 (9-155)||(13856096-13856241)
chr3 (8-129)||(5391453-5391573)
chr3 (9-153)||(21853194-21853337)
chr3 (9-148)||(3178699-3178838)
chr3 (9-155)||(20382514-20382660)
chr3 (8-139)||(40845919-40846049)
chr3 (8-148)||(44994961-44995101)
chr3 (31-139)||(8950506-8950614)
chr3 (8-107)||(23467528-23467626)
chr3 (8-155)||(32352843-32352989)
chr3 (65-131)||(39352246-39352311)
chr3 (79-136)||(50663200-50663257)
[»] chr5 (26 HSPs)
chr5 (8-153)||(36769062-36769207)
chr5 (9-138)||(42119617-42119747)
chr5 (8-155)||(33271256-33271403)
chr5 (9-155)||(8456949-8457096)
chr5 (12-136)||(614397-614522)
chr5 (8-145)||(27916133-27916272)
chr5 (9-138)||(25560330-25560460)
chr5 (36-159)||(10115182-10115306)
chr5 (31-155)||(38397616-38397740)
chr5 (9-155)||(11856290-11856437)
chr5 (9-131)||(29491424-29491545)
chr5 (34-136)||(39862492-39862594)
chr5 (9-129)||(10081140-10081261)
chr5 (9-144)||(3341117-3341252)
chr5 (17-129)||(9737993-9738108)
chr5 (9-153)||(16618558-16618701)
chr5 (31-155)||(37169019-37169143)
chr5 (8-155)||(6257396-6257542)
chr5 (8-131)||(23218481-23218603)
chr5 (27-148)||(6174758-6174881)
chr5 (46-129)||(29790231-29790313)
chr5 (31-107)||(15631631-15631708)
chr5 (9-52)||(22903252-22903295)
chr5 (39-148)||(10052493-10052603)
chr5 (57-127)||(15475408-15475478)
chr5 (81-131)||(33188333-33188383)
[»] chr1 (27 HSPs)
chr1 (9-162)||(10907627-10907781)
chr1 (12-155)||(38859849-38859993)
chr1 (39-155)||(5558335-5558450)
chr1 (8-147)||(26835332-26835472)
chr1 (8-155)||(10156002-10156148)
chr1 (69-155)||(37189696-37189781)
chr1 (8-139)||(3346782-3346912)
chr1 (26-148)||(30745356-30745479)
chr1 (26-148)||(30766807-30766930)
chr1 (8-148)||(49902464-49902603)
chr1 (31-155)||(5975006-5975130)
chr1 (8-136)||(7742784-7742911)
chr1 (31-155)||(47022720-47022844)
chr1 (12-137)||(30252748-30252875)
chr1 (8-155)||(42517280-42517430)
chr1 (8-125)||(44107404-44107522)
chr1 (8-136)||(48392411-48392538)
chr1 (9-131)||(14796871-14796994)
chr1 (9-131)||(14805745-14805868)
chr1 (9-128)||(23908282-23908400)
chr1 (8-155)||(26511620-26511766)
chr1 (29-144)||(45968683-45968798)
chr1 (26-128)||(13131909-13132011)
chr1 (65-139)||(42456624-42456698)
chr1 (31-107)||(29149582-29149658)
chr1 (70-128)||(44462491-44462549)
chr1 (15-74)||(37189304-37189364)
[»] chr4 (24 HSPs)
chr4 (8-162)||(50328790-50328945)
chr4 (9-155)||(17888536-17888683)
chr4 (8-162)||(46473988-46474143)
chr4 (58-148)||(47084057-47084147)
chr4 (8-128)||(12792244-12792365)
chr4 (44-147)||(10094387-10094491)
chr4 (8-171)||(25954746-25954909)
chr4 (9-138)||(11054448-11054581)
chr4 (9-155)||(31377385-31377531)
chr4 (9-128)||(35322717-35322837)
chr4 (8-155)||(1535767-1535913)
chr4 (31-171)||(34241011-34241152)
chr4 (8-153)||(37801252-37801396)
chr4 (17-139)||(20818570-20818693)
chr4 (8-153)||(49284353-49284497)
chr4 (14-129)||(9742545-9742661)
chr4 (31-139)||(36012187-36012295)
chr4 (9-106)||(322584-322682)
chr4 (58-148)||(19124731-19124821)
chr4 (8-107)||(35018932-35019030)
chr4 (9-139)||(54090176-54090306)
chr4 (31-107)||(46583575-46583651)
chr4 (8-128)||(52632514-52632633)
chr4 (98-171)||(24992007-24992081)
[»] chr6 (12 HSPs)
chr6 (8-126)||(27863694-27863812)
chr6 (9-128)||(34103681-34103800)
chr6 (14-139)||(13103120-13103246)
chr6 (9-136)||(28750655-28750783)
chr6 (9-155)||(9231840-9231985)
chr6 (8-155)||(24694637-24694783)
chr6 (8-139)||(14309800-14309930)
chr6 (9-107)||(11279536-11279634)
chr6 (70-148)||(24497567-24497645)
chr6 (45-153)||(13627572-13627680)
chr6 (39-148)||(1727926-1728035)
chr6 (11-107)||(11212669-11212765)
[»] chr7 (18 HSPs)
chr7 (8-155)||(44164729-44164875)
chr7 (9-155)||(10334173-10334320)
chr7 (9-172)||(17303082-17303248)
chr7 (8-171)||(24320408-24320571)
chr7 (8-150)||(32876521-32876662)
chr7 (9-162)||(33057636-33057789)
chr7 (9-155)||(34707113-34707258)
chr7 (39-136)||(9770685-9770782)
chr7 (8-129)||(29555951-29556071)
chr7 (31-154)||(10576691-10576814)
chr7 (9-145)||(19334556-19334693)
chr7 (9-136)||(26284383-26284510)
chr7 (31-131)||(29981123-29981223)
chr7 (31-155)||(34259536-34259660)
chr7 (58-136)||(15017818-15017896)
chr7 (8-155)||(29238129-29238275)
chr7 (9-105)||(41853128-41853226)
chr7 (89-136)||(43342486-43342533)
[»] chr8 (18 HSPs)
chr8 (8-153)||(35806790-35806934)
chr8 (8-155)||(42072424-42072570)
chr8 (8-139)||(21525354-21525484)
chr8 (8-139)||(33934371-33934501)
chr8 (8-153)||(19334778-19334923)
chr8 (9-155)||(22324593-22324738)
chr8 (70-147)||(16591369-16591446)
chr8 (31-139)||(42013890-42013998)
chr8 (12-144)||(16818970-16819105)
chr8 (28-131)||(24065288-24065391)
chr8 (8-156)||(26021391-26021539)
chr8 (9-136)||(10112042-10112170)
chr8 (58-153)||(2271240-2271335)
chr8 (9-155)||(2824168-2824314)
chr8 (9-139)||(43282853-43282984)
chr8 (58-128)||(21488111-21488181)
chr8 (62-148)||(16523155-16523241)
chr8 (8-53)||(16523064-16523109)
[»] chr2 (18 HSPs)
chr2 (8-155)||(14942030-14942176)
chr2 (9-155)||(29846439-29846584)
chr2 (9-128)||(40780050-40780171)
chr2 (8-139)||(19181544-19181674)
chr2 (8-155)||(42769744-42769890)
chr2 (9-105)||(23685406-23685503)
chr2 (9-171)||(28321672-28321836)
chr2 (8-107)||(1387322-1387421)
chr2 (8-131)||(41674716-41674841)
chr2 (8-139)||(14539706-14539838)
chr2 (8-140)||(33009666-33009800)
chr2 (8-153)||(40277276-40277420)
chr2 (8-148)||(14186431-14186570)
chr2 (9-129)||(3956567-3956688)
chr2 (9-129)||(6318470-6318592)
chr2 (28-136)||(43139760-43139870)
chr2 (58-128)||(2888086-2888156)
chr2 (12-105)||(25665222-25665316)
[»] scaffold0086 (1 HSPs)
scaffold0086 (58-171)||(20800-20914)
[»] scaffold0045 (1 HSPs)
scaffold0045 (28-136)||(34457-34566)
[»] scaffold0016 (1 HSPs)
scaffold0016 (8-53)||(85505-85550)


Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 8 - 269
Target Start/End: Complemental strand, 6280492 - 6280231
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6280492 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 6280393  T
Q  108 gggaaatttacataagaaattgcacaaaatttaggccggagtccgggctcgccggccttagaactaccactgcatgtgattgcaattatataagagggcc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6280392 gggaaatttacataagaaattgcacaaaatttaggccggagtccgggctcgccggccttagaactaccactgcatgtgattgcaattatataagagggcc 6280293  T
Q  208 ggtttaataatttttaatagtaagtgaatcgtaaagcaagtttgaatatatacgaatttctt 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6280292 ggtttaataatttttaatagtaagtgaatcgtaaagcaagtttgaatatatacgaatttctt 6280231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 8 - 154
Target Start/End: Complemental strand, 10839514 - 10839367
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaa-tctaaataaattgtcaaatttatagaggtttatataagaaattc 106  Q
    |||||||||||| ||||   |||||||||| |||| |||||||||| |||||||| |||||| |||||| | ||||||||||||||||||||||||||||    
T  10839514 tttgcaacacatgtataggtgtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttatagaggtttatataagaaattc 10839415  T
Q  107 agggaaatttacataagaaattgcacaaaatttaggccggagtccggg 154  Q
    || |||||||||||||||||||||| ||||||| || ||||| |||||    
T  10839414 agagaaatttacataagaaattgcaaaaaatttgggtcggagcccggg 10839367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 27 - 139
Target Start/End: Complemental strand, 22845476 - 22845364
Alignment:
Q  27 ggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaa 126  Q
    |||||| ||||||||| |||||||||| || ||||||||||| |||||||||||||||||| ||||||||||||||||| |||  |||||||||||||||    
T  22845476 ggtttatataaaaaattgcaagcaaataataaaaaatctaaagaaattgtcaaatttataggggtttatataagaaatttaggtgaatttacataagaaa 22845377  T
Q  127 ttgcacaaaattt 139  Q
    ||||| |||||||    
T  22845376 ttgcaaaaaattt 22845364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 144
Target Start/End: Original strand, 1781757 - 1781893
Alignment:
Q  9 ttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaa-atctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    ||||||||||||||||  ||||||||||  |||| |||||||||| ||||||| ||||||| |||||| | ||||||| | |||||||||||||||||||    
T  1781757 ttgcaacacatttataggggtttacatacgaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttattggggtttatataagaaattca 1781856  T
Q  108 gggaaatttacataagaaattgcacaaaatttaggcc 144  Q
    | |  ||||||||||||||||||| ||||||| ||||    
T  1781857 gagggatttacataagaaattgcaaaaaatttgggcc 1781893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 10 - 136
Target Start/End: Original strand, 8926762 - 8926889
Alignment:
Q  10 tgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaa-tctaaataaattgtcaaatttatagaggtttatataagaaattcag 108  Q
    |||||||||||||||| |||| |||||| |||| |||||||||| |||||||| |||| | |||||| ||||||||||| ||||||||| ||||||||||    
T  8926762 tgcaacacatttataagggttaacataagaaattgcaagcaaataatcaaaaaatctacagaaattgccaaatttataggggtttatatcagaaattcag 8926861  T
Q  109 ggaaatttacataagaaattgcacaaaa 136  Q
     | |||||||||| ||||||||| ||||    
T  8926862 aggaatttacatatgaaattgcaaaaaa 8926889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 27 - 153
Target Start/End: Complemental strand, 43347451 - 43347324
Alignment:
Q  27 ggtttacataaaaaatggcaagcaaattatcaaaaa-tctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaa 125  Q
    ||||||||||| |||| |||||||||| |||||||| |||||| |||||| | ||||| ||| |||||||||||||||||||| | ||||||||||||||    
T  43347451 ggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttgtaggggtttatataagaaattcagaggaatttacataagaa 43347352  T
Q  126 attgcacaaaatttaggccggagtccgg 153  Q
    |||||| ||||||| || ||||| ||||    
T  43347351 attgcaaaaaatttgggtcggagcccgg 43347324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 54546904 - 54547027
Alignment:
Q  13 aacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaa 112  Q
    ||||||||||||  | ||||||||| |||| | |||||||| |||||||||||||| |||||||| ||||||||| |||||||||||||||||||  | |    
T  54546904 aacacatttatagggatttacataagaaattgtaagcaaataatcaaaaatctaaagaaattgtccaatttataggggtttatataagaaattcaaagga 54547003  T
Q  113 atttacataagaaattgcacaaaa 136  Q
    |||||| |||||||||||| ||||    
T  54547004 atttacgtaagaaattgcaaaaaa 54547027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 27 - 171
Target Start/End: Complemental strand, 46685897 - 46685753
Alignment:
Q  27 ggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaa 126  Q
    ||||| ||||| |||| |||| ||||| || |||||| |||| ||||||||||||||||||  |||||||||||||||| ||||  ||||||||||||||    
T  46685897 ggtttgcataagaaattgcaaacaaataataaaaaatataaagaaattgtcaaatttataggagtttatataagaaatttagggggatttacataagaaa 46685798  T
Q  127 ttgcacaaaatttaggccggagtccgggctcgccgg-ccttagaac 171  Q
     |||| ||||||| |||||| ||||||||| ||||| |||||||||    
T  46685797 -tgcaaaaaatttgggccggcgtccgggcttgccggaccttagaac 46685753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 8 - 128
Target Start/End: Original strand, 48206848 - 48206968
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaa-atctaaataaattgtcaaatttatagaggtttatataagaaattc 106  Q
    ||||||||||||||||||  |||||||||| |||| ||||| |||| ||||||| ||||||| |||||||||||||||||| |||||||||||| |||||    
T  48206848 tttgcaacacatttataagtgtttacataagaaattgcaagtaaataatcaaaaaatctaaaaaaattgtcaaatttataggggtttatataag-aattc 48206946  T
Q  107 agggaaatttacataagaaatt 128  Q
    || | ||||||||||| |||||    
T  48206947 agaggaatttacataaaaaatt 48206968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 136
Target Start/End: Original strand, 33103738 - 33103866
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    |||||||||||||||||| | ||||||||| ||||  ||||||||| || |||||| |||||||||| || ||||||||| |  |||||||||||||| |    
T  33103738 tttgcaacacatttataaggatttacataagaaattacaagcaaataataaaaaatttaaataaattatccaatttatagggacttatataagaaattta 33103837  T
Q  108 gggaaatttacataagaaattgcacaaaa 136  Q
     || |||||||||||||||||||| ||||    
T  33103838 agggaatttacataagaaattgcaaaaaa 33103866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 155
Target Start/End: Original strand, 36539627 - 36539774
Alignment:
Q  9 ttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaa-tctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    ||||||||||||||||  ||||||||||  |||| |||| ||||| |||||||| | |||| |||||| | ||||||||| || |||||||||||||| |    
T  36539627 ttgcaacacatttataggggtttacataggaaattgcaaacaaataatcaaaaaatttaaagaaattgcccaatttataggggattatataagaaattta 36539726  T
Q  108 gggaaatttacataagaaattgcacaaaatttaggccggagtccgggc 155  Q
      |  ||||||||||||||||||| |||||||||||||||| ||||||    
T  36539727 tagggatttacataagaaattgcataaaatttaggccggagcccgggc 36539774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 12 - 136
Target Start/End: Original strand, 51336208 - 51336332
Alignment:
Q  12 caacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcaggga 111  Q
    ||||||||||||| | |||||| ||| |||| ||||| |||| || |||||| |||| ||||||||||||||||| || ||||||||| |||||||||      
T  51336208 caacacatttatagaagtttacgtaagaaattgcaagtaaataataaaaaatttaaagaaattgtcaaatttataaagatttatataaaaaattcaggag 51336307  T
Q  112 aatttacataagaaattgcacaaaa 136  Q
    ||||||||||| |||||||| ||||    
T  51336308 aatttacataaaaaattgcaaaaaa 51336332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 9 - 153
Target Start/End: Complemental strand, 19649506 - 19649360
Alignment:
Q  9 ttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatc--aaaaatctaaataaattgtcaaatttatagaggtttatataagaaattc 106  Q
    ||||||||||||||||  |  |||||||| |||| |||||||||| |||  ||||||||||| |||||||| ||||||||  ||||||||||||||||||    
T  19649506 ttgcaacacatttatagggaattacataagaaattgcaagcaaataatccaaaaaatctaaagaaattgtccaatttataagggtttatataagaaattc 19649407  T
Q  107 agggaaatttacataagaaattgcacaaaatttaggccggagtccgg 153  Q
    |  |  |||||||||||||||| || |||| ||  ||||||| ||||    
T  19649406 atagcgatttacataagaaattacaaaaaagttgtgccggagcccgg 19649360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 9 - 155
Target Start/End: Original strand, 13856096 - 13856241
Alignment:
Q  9 ttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcag 108  Q
    ||||||||||||||||  ||  ||||||| |||| |||||||||| || |||||| |||| |||||||| ||||||||| | |||||||||||||||||     
T  13856096 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttatagggatttatataagaaattcat 13856194  T
Q  109 ggaaatttacataagaaattgcacaaaatttaggccggagtccgggc 155  Q
     |  ||||||| ||||||||| | ||||||| | |||||| ||||||    
T  13856195 agggatttacacaagaaattgaaaaaaatttggcccggagcccgggc 13856241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 129
Target Start/End: Original strand, 5391453 - 5391573
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    |||||||||||||||||  ||  ||||||| |||| |||||||||| || |||||| |||| |||||||| ||||||||| |||||||||||||||||||    
T  5391453 tttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattca 5391551  T
Q  108 gggaaatttacataagaaattg 129  Q
      |  ||||||| |||||||||    
T  5391552 tagggatttacacaagaaattg 5391573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 153
Target Start/End: Original strand, 21853194 - 21853337
Alignment:
Q  9 ttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcag 108  Q
    ||||||||||||||||  ||  ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| | |||||||||||||||||     
T  21853194 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggttttatataagaaattcat 21853292  T
Q  109 ggaaatttacataagaaattgcacaaaatttaggccggagtccgg 153  Q
     |  ||||||| ||||||||||| ||||||| | |||||| ||||    
T  21853293 agggatttacacaagaaattgcaaaaaatttggcccggagcccgg 21853337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 148
Target Start/End: Original strand, 3178699 - 3178838
Alignment:
Q  9 ttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcag 108  Q
    |||||||| |||||||   |||||||||  |||| |||||||||| |  ||||| ||||| |||||| | ||||||||||| |||||||||||||||||     
T  3178699 ttgcaacatatttataggagtttacatacgaaattgcaagcaaataaaaaaaaaactaaagaaattgcccaatttatagagatttatataagaaattcat 3178798  T
Q  109 ggaaatttacataagaaattgcacaaaatttaggccggag 148  Q
     |  ||||||| ||||||||| | ||||||| ||||||||    
T  3178799 agggatttacacaagaaattgaaaaaaatttgggccggag 3178838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 155
Target Start/End: Original strand, 20382514 - 20382660
Alignment:
Q  9 ttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaa-atctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    ||||||| ||||||||   |||||||||| |||| |||||||||| || |||| ||||||| |||||  | ||||||||| |||||||||||||||||||    
T  20382514 ttgcaacgcatttataggagtttacataagaaattgcaagcaaataataaaaaaatctaaagaaatttcccaatttataggggtttatataagaaattca 20382613  T
Q  108 gggaaatttacataagaaattgcacaaaatttaggccggagtccgggc 155  Q
      |  ||||||||||||||||  | ||||||| |||||||| ||||||    
T  20382614 tagggatttacataagaaatt-aaaaaaatttgggccggagcccgggc 20382660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 40846049 - 40845919
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    |||||||||||||||||  ||  ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| |||||||||||||||||||    
T  40846049 tttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 40845951  T
Q  108 gggaaatttacataagaaattgcacaaaattt 139  Q
      |  ||||||| || |||||||| |||||||    
T  40845950 tagggatttacacaaaaaattgcaaaaaattt 40845919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 148
Target Start/End: Complemental strand, 44995101 - 44994961
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttata-gaggtttatataagaaattc 106  Q
    |||||||||||||||||  ||  ||||||| |||| |||||||||| || |||||| |||| |||||| | |||||||| | ||||||||||||||||||    
T  44995101 tttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataaggggtttatataagaaattc 44995003  T
Q  107 agggaaatttacataagaaattgcacaaaatttaggccggag 148  Q
    |  |  ||||||| ||||||||||| ||||||| | ||||||    
T  44995002 atagggatttacacaagaaattgcaaaaaatttggcccggag 44994961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 139
Target Start/End: Complemental strand, 8950614 - 8950506
Alignment:
Q  31 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgc 130  Q
    ||||||| ||||  ||||||||| || |||||| |||| |||||| | ||||||||| | |||||||||||||||||  | |||||||| ||||||||||    
T  8950614 tacataagaaatttcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcataggaatttacacaagaaattgc 8950515  T
Q  131 acaaaattt 139  Q
    | |||||||    
T  8950514 aaaaaattt 8950506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 107
Target Start/End: Complemental strand, 23467626 - 23467528
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    |||||||||||||||||  ||  ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| |||||||||||||||||||    
T  23467626 tttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 23467528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 155
Target Start/End: Original strand, 32352843 - 32352989
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    |||||||||||||||||  ||  ||||||| |||| | |||||||| || |||||| |||| |||||| | ||||||||| |||||||||||||||||||    
T  32352843 tttgcaacacatttatag-ggcgtacataagaaattgtaagcaaataataaaaaatgtaaagaaattgcctaatttataggggtttatataagaaattca 32352941  T
Q  108 gggaaatttacataagaaattgcacaaaatttaggccggagtccgggc 155  Q
      |  ||||| | ||||||||||| |||| || | |||||| ||||||    
T  32352942 tagggatttatacaagaaattgcaaaaaaattggcccggagcccgggc 32352989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 131
Target Start/End: Original strand, 39352246 - 39352311
Alignment:
Q  65 taaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgca 131  Q
    |||| ||||||| |||||||||||| ||||||||||||||| || |||||||| |||||||||||||    
T  39352246 taaagaaattgttaaatttatagagatttatataagaaatttagagaaattta-ataagaaattgca 39352311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 136
Target Start/End: Original strand, 50663200 - 50663257
Alignment:
Q  79 aatttatagaggtttatataagaaattcagggaaatttacataagaaattgcacaaaa 136  Q
    ||||||||  ||||||||||||||||| || | ||| |||||||||||||||| ||||    
T  50663200 aatttataagggtttatataagaaatttagaggaatctacataagaaattgcaaaaaa 50663257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 8 - 153
Target Start/End: Complemental strand, 36769207 - 36769062
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    |||||||||||||||||  ||||||||||  |||| |||||||||| |||||||||||||| |||||| | |||| ||||||||||||||||||||||||    
T  36769207 tttgcaacacatttataggggtttacatatgaaattgcaagcaaataatcaaaaatctaaagaaattgcctaattcatagaggtttatataagaaattca 36769108  T
Q  108 gggaaatttacataagaaattgcacaaaatttaggccggagtccgg 153  Q
    | | |||||||||||||||||||| ||||||| |||||||||||||    
T  36769107 gaggaatttacataagaaattgcaaaaaatttgggccggagtccgg 36769062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 9 - 138
Target Start/End: Original strand, 42119617 - 42119747
Alignment:
Q  9 ttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaa-atctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    ||||||||||||||||  ||||||||||| ||||  ||| ||||| || |||| ||||||| |||||||| |||||||||||||||||||||||||||||    
T  42119617 ttgcaacacatttataggggtttacataagaaattacaaacaaataataaaaaaatctaaagaaattgtccaatttatagaggtttatataagaaattca 42119716  T
Q  108 gggaaatttacataagaaattgcacaaaatt 138  Q
    | | ||||||||||||||||| || ||||||    
T  42119717 gaggaatttacataagaaattacaaaaaatt 42119747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 8 - 155
Target Start/End: Complemental strand, 33271403 - 33271256
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    ||||||| | |||||||  |||||| |||| ||||  ||| ||||| || |||||| |||| |||||||| |||||||||||||||||||||||||||||    
T  33271403 tttgcaatatatttataggggtttatataagaaattacaaacaaataataaaaaatataaagaaattgtccaatttatagaggtttatataagaaattca 33271304  T
Q  108 gggaaatttacataagaaattgcacaaaatttaggccggagtccgggc 155  Q
      | |||||||||||||||||| | |||| || |||||||||||||||    
T  33271303 acggaatttacataagaaattgtaaaaaaattgggccggagtccgggc 33271256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 155
Target Start/End: Complemental strand, 8457096 - 8456949
Alignment:
Q  9 ttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaa-tctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    |||||||| |||||||  ||||||||||| |||| |||||||||| || ||||| |||||| |||||| | ||||||||| || ||||||||||||||||    
T  8457096 ttgcaacatatttataggggtttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgcccaatttatagggggttatataagaaattca 8456997  T
Q  108 gggaaatttacataagaaattgcacaaaatttaggccggagtccgggc 155  Q
      |  ||||||||||||||||| | ||||||| |||||||| ||||||    
T  8456996 tagggatttacataagaaattgaaaaaaatttgggccggagcccgggc 8456949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 136
Target Start/End: Complemental strand, 614522 - 614397
Alignment:
Q  12 caacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaa-tctaaataaattgtcaaatttatagaggtttatataagaaattcaggg 110  Q
    |||||||||||||   |||||||||| |||| |||||||||| || ||||| |||||| |||||| ||||||||||| | ||||||||| |||||||| |    
T  614522 caacacatttataggtgtttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgccaaatttatagggatttatataaaaaattcagag 614423  T
Q  111 aaatttacataagaaattgcacaaaa 136  Q
     |||||||||||||||||||| ||||    
T  614422 gaatttacataagaaattgcaaaaaa 614397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 8 - 145
Target Start/End: Original strand, 27916133 - 27916272
Alignment:
Q  8 tttgcaacacatttataa-aggtttacataaaaaatggcaagcaaattatcaaaaa-tctaaataaattgtcaaatttatagaggtttatataagaaatt 105  Q
    |||||||||||||||||  ||||||| |||| |||| |||| ||||| || ||||| |||||  ||||||   |||||||||  ||||||||||||||||    
T  27916133 tttgcaacacatttataggaggtttatataagaaattgcaaacaaataataaaaaaatctaatgaaattgctcaatttataggagtttatataagaaatt 27916232  T
Q  106 cagggaaatttacataagaaattgcacaaaatttaggccg 145  Q
    ||| | |||||||||||||||||||| |||||||||||||    
T  27916233 cagaggaatttacataagaaattgcaaaaaatttaggccg 27916272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 138
Target Start/End: Complemental strand, 25560460 - 25560330
Alignment:
Q  9 ttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaa-aatctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    ||||||||||||||||  ||||||||||| |||| |||||||||| || ||| |||||||| |||||||| |||||||||| |||||||||||||||| |    
T  25560460 ttgcaacacatttatatgggtttacataagaaattgcaagcaaataataaaataatctaaagaaattgtccaatttatagatgtttatataagaaattta 25560361  T
Q  108 gggaaatttacataagaaattgcacaaaatt 138  Q
         ||||||||||||||||| | ||||||    
T  25560360 taaggatttacataagaaattgaaaaaaatt 25560330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 36 - 159
Target Start/End: Original strand, 10115182 - 10115306
Alignment:
Q  36 aaaaaatggcaagcaaattatcaaaa-atctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgcacaa 134  Q
    ||||||| |||||||||| || |||| ||||||| |||||||| ||||||| | |||||||||||||||| ||| | ||||||||||| |||||||| ||    
T  10115182 aaaaaattgcaagcaaataattaaaaaatctaaagaaattgtctaatttattggggtttatataagaaatccagaggaatttacataaaaaattgcaaaa 10115281  T
Q  135 aatttaggccggagtccgggctcgc 159  Q
    || || |||||||| ||||| ||||    
T  10115282 aaattgggccggagcccgggatcgc 10115306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 31 - 155
Target Start/End: Original strand, 38397616 - 38397740
Alignment:
Q  31 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgc 130  Q
    ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| |||||||||||||||||||  |  ||||||| ||||||||||    
T  38397616 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattgc 38397715  T
Q  131 acaaaatttaggccggagtccgggc 155  Q
    | ||||||| | |||||| ||||||    
T  38397716 aaaaaatttggcccggagcccgggc 38397740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 9 - 155
Target Start/End: Original strand, 11856290 - 11856437
Alignment:
Q  9 ttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaa-atctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    |||||||| |||||||   |||||||||| |||| ||||| |||| ||||||| ||||||| |||||| | ||||||||| | |||||||||||||||||    
T  11856290 ttgcaacatatttataggagtttacataagaaattgcaagtaaataatcaaaaaatctaaagaaattgcccaatttatagtgatttatataagaaattca 11856389  T
Q  108 gggaaatttacataagaaattgcacaaaatttaggccggagtccgggc 155  Q
    | |  |||||||||||||||| || |||| || ||||| || ||||||    
T  11856390 gagcgatttacataagaaattacagaaaacttgggccgaagcccgggc 11856437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 9 - 131
Target Start/End: Complemental strand, 29491545 - 29491424
Alignment:
Q  9 ttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcag 108  Q
    ||||||||||||||||   |||| ||||| |||| |||||||||| ||||||||  | ||  ||||||| ||||||||| |||| ||||||||||||||     
T  29491545 ttgcaacacatttatatgtgtttgcataagaaattgcaagcaaataatcaaaaaatttaaagaattgtccaatttataggggtt-atataagaaattcat 29491447  T
Q  109 ggaaatttacataagaaattgca 131  Q
     ||||||||||||||||||||||    
T  29491446 agaaatttacataagaaattgca 29491424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 34 - 136
Target Start/End: Complemental strand, 39862594 - 39862492
Alignment:
Q  34 ataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgcaca 133  Q
    |||| |||| |||||||||| || ||||||||||| |||||| | ||||||||| |||||||||||||||||||  | |||||||| ||||||||||| |    
T  39862594 ataagaaattgcaagcaaataataaaaaatctaaagaaattgcccaatttataggggtttatataagaaattcataggaatttacacaagaaattgcaaa 39862495  T
Q  134 aaa 136  Q
    |||    
T  39862494 aaa 39862492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 129
Target Start/End: Original strand, 10081140 - 10081261
Alignment:
Q  9 ttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaa-atctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    ||||||||||||||||   |||||||||| |||| | |||||||| || |||| ||||||| |||||| | ||||||||| |||||||||||||||||||    
T  10081140 ttgcaacacatttataggagtttacataagaaattgtaagcaaataataaaaaaatctaaagaaattgcccaatttataggggtttatataagaaattca 10081239  T
Q  108 gggaaatttacataagaaattg 129  Q
      |  |||||||||||||||||    
T  10081240 tagggatttacataagaaattg 10081261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 144
Target Start/End: Complemental strand, 3341252 - 3341117
Alignment:
Q  9 ttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatat-aagaaattca 107  Q
    |||||||||||| |   ||||||||||||||||| | |||||||| |||||||| ||||| |||||  | ||||||||| || |||||| || |||||||    
T  3341252 ttgcaacacattcaaggaggtttacataaaaaattgaaagcaaataatcaaaaagctaaagaaatttcccaatttataggggattatataaaaaaattca 3341153  T
Q  108 gggaaatttacataagaaattgcacaaaatttaggcc 144  Q
    | | |||||||||||||||||||| ||||||| ||||    
T  3341152 gag-aatttacataagaaattgcaaaaaatttgggcc 3341117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 129
Target Start/End: Complemental strand, 9738108 - 9737993
Alignment:
Q  17 catttataaaggtttacataaaaaatggcaagcaaattatcaaaaa-tctaaataaattgtcaaatttatagaggtttatataagaaattc--agggaaa 113  Q
    ||||||||  ||||||||||| |||| |||||||||| | |||||| |||||| |||||||| ||||||||| | ||||||||||||||||  |||||      
T  9738108 catttataggggtttacataagaaattgcaagcaaataaacaaaaaatctaaagaaattgtccaatttatagggatttatataagaaattcatagggatt 9738009  T
Q  114 tttacataagaaattg 129  Q
    ||||||||||||||||    
T  9738008 tttacataagaaattg 9737993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 153
Target Start/End: Complemental strand, 16618701 - 16618558
Alignment:
Q  9 ttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcag 108  Q
    ||||||||||||||||  ||  ||||||| |||| |||||||||| || |||||| |||| |||||||| |||||||||  ||||||||||||||||||     
T  16618701 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataataaaaaatataaaaaaattgtccaatttataggagtttatataagaaattcat 16618603  T
Q  109 ggaaatttacataagaaattgcacaaaatttaggccggagtccgg 153  Q
     |  ||||||| ||||||||| | ||||||| | |||||| ||||    
T  16618602 agggatttacacaagaaattgtaaaaaatttggcccggagcccgg 16618558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 31 - 155
Target Start/End: Complemental strand, 37169143 - 37169019
Alignment:
Q  31 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgc 130  Q
    ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| |||||||||||||||||||  |  ||||||| || |||||||    
T  37169143 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaaaaaattgc 37169044  T
Q  131 acaaaatttaggccggagtccgggc 155  Q
    | ||||||| | |||||| ||||||    
T  37169043 aaaaaatttggcccggagcccgggc 37169019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 155
Target Start/End: Complemental strand, 6257542 - 6257396
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    |||||||||||||||||  ||  || |||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| ||||| |||||||||||||    
T  6257542 tttgcaacacatttatag-ggcgtatataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttgtataagaaattca 6257444  T
Q  108 gggaaatttacataagaaattgcacaaaatttaggccggagtccgggc 155  Q
      |  ||||||| ||||||||||| ||||||| | |||||| ||||||    
T  6257443 tagggatttacacaagaaattgcaaaaaatttggcccggagcccgggc 6257396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 131
Target Start/End: Original strand, 23218481 - 23218603
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    |||||||||||||||||  ||  ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| |||||||||||||||||||    
T  23218481 tttgcaacacatttatag-ggagtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 23218579  T
Q  108 gggaaatttacataagaaattgca 131  Q
      |  ||||||| |||||||||||    
T  23218580 tagggatttacacaagaaattgca 23218603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 148
Target Start/End: Original strand, 6174758 - 6174881
Alignment:
Q  27 ggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagagg--tttatataagaaattcagggaaatttacataaga 124  Q
    ||||||||||  |||| |||||||||| || |||||| |||| |||||||| ||||||||| ||  ||||||||||||||||||   ||||||| |||||    
T  6174758 ggtttacataggaaattgcaagcaaataataaaaaatataaagaaattgtccaatttataggggggtttatataagaaattcagaagaatttacgtaaga 6174857  T
Q  125 aattgcacaaaatttaggccggag 148  Q
    |||| || ||||||| ||| ||||    
T  6174858 aattacaaaaaatttgggctggag 6174881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 129
Target Start/End: Complemental strand, 29790313 - 29790231
Alignment:
Q  46 aagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattg 129  Q
    |||||||| |||||||| ||||| |||||| | |||||||| ||||||||||||||||||||    ||||||||||||||||||    
T  29790313 aagcaaataatcaaaaa-ctaaagaaattgcccaatttataaaggtttatataagaaattcataagaatttacataagaaattg 29790231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 15631631 - 15631708
Alignment:
Q  31 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagagg-tttatataagaaattca 107  Q
    ||||||| |||| |||||||||| || |||||| |||| |||||||| ||||||||| || |||||||||||||||||    
T  15631631 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttatagggggtttatataagaaattca 15631708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 22903252 - 22903295
Alignment:
Q  9 ttgcaacacatttataaaggtttacataaaaaatggcaagcaaa 52  Q
    |||||||||||||||| |||||||||||| |||| |||||||||    
T  22903252 ttgcaacacatttatagaggtttacataagaaattgcaagcaaa 22903295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 148
Target Start/End: Complemental strand, 10052603 - 10052493
Alignment:
Q  39 aaatggcaagcaaattatcaaaaatct-aaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgcacaaaat 137  Q
    |||| |||||||||| ||| ||||| | ||| |||||  | |||||||||| ||||||||||| | ||||| |  ||||||||||||||||| | ||||     
T  10052603 aaattgcaagcaaataatctaaaattttaaagaaattacctaatttatagacgtttatataagtagttcagagggatttacataagaaattgtaaaaaaa 10052504  T
Q  138 ttaggccggag 148  Q
    || ||||||||    
T  10052503 ttgggccggag 10052493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 127
Target Start/End: Complemental strand, 15475478 - 15475408
Alignment:
Q  57 caaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaat 127  Q
    ||||||| |||| ||||| |  |||||||| || ||||||||| ||||| || ||||||||||||||||||    
T  15475478 caaaaatttaaagaaatttttcaatttatatagatttatataaaaaattaagagaaatttacataagaaat 15475408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 131
Target Start/End: Complemental strand, 33188383 - 33188333
Alignment:
Q  81 tttatagaggtttatataagaaattcagggaaatttacataagaaattgca 131  Q
    ||||||| ||||||||||||||||| ||   ||||||||||||||||||||    
T  33188383 tttataggggtttatataagaaatttagatgaatttacataagaaattgca 33188333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 9 - 162
Target Start/End: Complemental strand, 10907781 - 10907627
Alignment:
Q  9 ttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaa-tctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    ||||||||||||||||   || ||||||| |||| |||||||||| |||||||| |||||| ||||||||  |||||||| |||||||||||||||||||    
T  10907781 ttgcaacacatttataggtgtctacataagaaattgcaagcaaataatcaaaaaatctaaagaaattgtctgatttataggggtttatataagaaattca 10907682  T
Q  108 gggaaatttacataagaaattgcacaaaatttaggccggagtccgggctcgccgg 162  Q
    | | |||||||||||||||||||| ||||||| |||||||| ||||| |||||||    
T  10907681 gaggaatttacataagaaattgcaaaaaatttgggccggagcccggggtcgccgg 10907627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 12 - 155
Target Start/End: Original strand, 38859849 - 38859993
Alignment:
Q  12 caacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaa-atctaaataaattgtcaaatttatagaggtttatataagaaattcaggg 110  Q
    |||||||||||||  ||||||||||| |||| |||||||||| || |||| ||||||| |||||| | ||||||||| |||||||||||||||||||  |    
T  38859849 caacacatttataggggtttacataagaaattgcaagcaaataataaaaaaatctaaaaaaattgcccaatttataggggtttatataagaaattcatag 38859948  T
Q  111 aaatttacataagaaattgcacaaaatttaggccggagtccgggc 155  Q
     |||||||||||||||||| | ||||||| |||||||| ||||||    
T  38859949 gaatttacataagaaattgaaaaaaatttgggccggagcccgggc 38859993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 39 - 155
Target Start/End: Original strand, 5558335 - 5558450
Alignment:
Q  39 aaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgcacaaaatt 138  Q
    |||| |||||||||| |||||||||||||| |||||||| ||||||||| |||||||||||||||||| || |  |||||||||||||||||| |||| |    
T  5558335 aaattgcaagcaaataatcaaaaatctaaagaaattgtccaatttataggggtttatataagaaattc-ggaaggtttacataagaaattgcaaaaaaat 5558433  T
Q  139 taggccggagtccgggc 155  Q
    ||||||| || ||||||    
T  5558434 taggccgaagaccgggc 5558450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 147
Target Start/End: Original strand, 26835332 - 26835472
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatc-aaaaatctaaataaattgtcaaatttatagaggtttatataagaaattc 106  Q
    |||||||||||||||||  ||||||||| | |||| |||||||||| ||| ||||||||||| |||||||  |||||||||  |||||||||||||||||    
T  26835332 tttgcaacacatttatatgggtttacatgagaaattgcaagcaaataatcaaaaaatctaaaaaaattgttcaatttataggagtttatataagaaattc 26835431  T
Q  107 agggaaatttacataagaaattgcacaaaatttaggccgga 147  Q
    |    ||||||||||| |||||||| |||| ||||||||||    
T  26835432 atatgaatttacataataaattgcaaaaaaattaggccgga 26835472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 155
Target Start/End: Complemental strand, 10156148 - 10156002
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    |||||||||||||||||  ||  ||||||| |||| |||||||||| || |||||| |||| |||||||| |||||||||| ||||||||||||||||||    
T  10156148 tttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataataaaaaatataaagaaattgtccaatttatagaagtttatataagaaattca 10156050  T
Q  108 gggaaatttacataagaaattgcacaaaatttaggccggagtccgggc 155  Q
      | |||||||| ||||||||||| |||| || | |||||| ||||||    
T  10156049 taggaatttacacaagaaattgcaaaaaaattggcccggagcccgggc 10156002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 69 - 155
Target Start/End: Original strand, 37189696 - 37189781
Alignment:
Q  69 taaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgcacaaaatttaggccggagtccgggc 155  Q
    ||||||||| ||||||||||| |||||||||||||||||  || ||||||||||||||||||| ||||||| |||||||||||||||    
T  37189696 taaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgca-aaaatttgggccggagtccgggc 37189781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 8 - 139
Target Start/End: Original strand, 3346782 - 3346912
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    |||||||||||||||||  ||  ||||||| |||| |||||||||| || |||||| |||| |||||||| ||||||||| |||||||||||||||||||    
T  3346782 tttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattca 3346880  T
Q  108 gggaaatttacataagaaattgcacaaaattt 139  Q
      |  ||||||| || |||||||| |||||||    
T  3346881 tagggatttacacaacaaattgcaaaaaattt 3346912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 26 - 148
Target Start/End: Original strand, 30745356 - 30745479
Alignment:
Q  26 aggtttacataaaaaatggcaagcaaattatcaaaaa-tctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataaga 124  Q
    |||||||||||| |||| ||||| |||| |||||||| | |||| |||||||| ||||||||| | |||||| ||||||||||| ||||||||||||| |    
T  30745356 aggtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagggatttataaaagaaattcagagaaatttacataaaa 30745455  T
Q  125 aattgcacaaaatttaggccggag 148  Q
    ||||||| || |||| || |||||    
T  30745456 aattgcaaaatatttgggtcggag 30745479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 26 - 148
Target Start/End: Original strand, 30766807 - 30766930
Alignment:
Q  26 aggtttacataaaaaatggcaagcaaattatcaaaaa-tctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataaga 124  Q
    |||||||||||| |||| ||||| |||| |||||||| | |||| |||||||| ||||||||| | |||||| ||||||||||| ||||||||||||| |    
T  30766807 aggtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagggatttataaaagaaattcagagaaatttacataaaa 30766906  T
Q  125 aattgcacaaaatttaggccggag 148  Q
    ||||||| || |||| || |||||    
T  30766907 aattgcaaaatatttgggtcggag 30766930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 49902464 - 49902603
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    |||||||||||||||||  ||  ||||||| |||| |||||||||| || |||||| |||| |||||| |  |||||||| |||||||||||||||||||    
T  49902464 tttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgccctatttataggggtttatataagaaattca 49902562  T
Q  108 gggaaatttacataagaaattgcacaaaatttaggccggag 148  Q
      |  ||||||| ||||||||||| ||||||| | ||||||    
T  49902563 tagggatttacacaagaaattgcaaaaaatttggcccggag 49902603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 155
Target Start/End: Original strand, 5975006 - 5975130
Alignment:
Q  31 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgc 130  Q
    ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| ||||||||||||||||||   |  ||||||| |||||||||     
T  5975006 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttataggggtttatataagaaattcttagggatttacacaagaaattga 5975105  T
Q  131 acaaaatttaggccggagtccgggc 155  Q
    | ||||||| | |||||| ||||||    
T  5975106 aaaaaatttggcccggagcccgggc 5975130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 136
Target Start/End: Complemental strand, 7742911 - 7742784
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    |||||||||||||||||  ||  ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| |||||||||||||||||||    
T  7742911 tttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 7742813  T
Q  108 gggaaatttacataagaaattgcacaaaa 136  Q
         ||||||| ||||||||||| ||||    
T  7742812 taaggatttacacaagaaattgcaaaaaa 7742784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 155
Target Start/End: Original strand, 47022720 - 47022844
Alignment:
Q  31 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgc 130  Q
    ||||||| ||||  |||| |||| || |||||| |||| |||||| | |||||||||  ||||||||||||||||||  || ||||||| ||||||||||    
T  47022720 tacataagaaattacaagtaaataataaaaaatataaagaaattgcctaatttataggagtttatataagaaattcatagagatttacacaagaaattgc 47022819  T
Q  131 acaaaatttaggccggagtccgggc 155  Q
    | ||||||| | |||||| ||||||    
T  47022820 aaaaaatttggcccggagcccgggc 47022844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 137
Target Start/End: Complemental strand, 30252875 - 30252748
Alignment:
Q  12 caacacatttataaaggtttacataaaaaatggcaagcaaattatc-aaaaatctaaataaattgtcaaatttatagaggtttatat-aagaaattcagg 109  Q
    ||||| |||||||  ||||||||||| |||| |||||||||| ||| ||||||||||| || ||||| ||||||||| | ||||||| || ||||||||     
T  30252875 caacatatttataggggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaagttgtctaatttatagggatttatataaaaaaattcaga 30252776  T
Q  110 gaaatttacataagaaattgcacaaaat 137  Q
     ||||||| |||| |||||||| |||||    
T  30252775 aaaatttatataaaaaattgcaaaaaat 30252748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 155
Target Start/End: Complemental strand, 42517430 - 42517280
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggttt----atataagaaa 103  Q
    |||||||||||||||||  ||  ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| |||||    ||||||||||    
T  42517430 tttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttgtttatataagaaa 42517332  T
Q  104 ttcagggaaatttacataagaaattgcacaaaatttaggccggagtccgggc 155  Q
    ||||  |  ||||||| ||||||||||| ||||||| | |||||| ||||||    
T  42517331 ttcatagggatttacacaagaaattgcaaaaaatttggcccggagcccgggc 42517280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 44107522 - 44107404
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatc-aaaaatctaaataaattgtcaaatttatagaggtttatataagaaattc 106  Q
    |||||||||||||||||| | ||||||||| |||| ||||| |||| ||| |||||||| || |||||    ||||||||| ||||||||||| ||| ||    
T  44107522 tttgcaacacatttataaggttttacataagaaattgcaagtaaataatcaaaaaatctgaagaaattaattaatttataggggtttatataaaaaaatc 44107423  T
Q  107 agggaaatttacataagaa 125  Q
    || | ||||||||||||||    
T  44107422 agaggaatttacataagaa 44107404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 136
Target Start/End: Complemental strand, 48392538 - 48392411
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    |||||||||||||||||  ||  ||||||| |||| |||||||||| || |||||| |||  |||||| | ||||||||| | |||||||||||||||||    
T  48392538 tttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataataaaaaatgtaatgaaattgcccaatttatagggatttatataagaaattca 48392440  T
Q  108 gggaaatttacataagaaattgcacaaaa 136  Q
      |  ||||||| ||||||||||| ||||    
T  48392439 tagggatttacacaagaaattgcaaaaaa 48392411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 131
Target Start/End: Original strand, 14796871 - 14796994
Alignment:
Q  9 ttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatc-aaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    |||||| |||||||||  ||||||||||| |||| ||||||||||  || |||||||||||  ||| | | ||||||||   || |||||||||||||||    
T  14796871 ttgcaatacatttatacgggtttacataagaaattgcaagcaaatattcgaaaaatctaaagtaatggcctaatttataagtgtgtatataagaaattca 14796970  T
Q  108 gggaaatttacataagaaattgca 131  Q
    | | ||||||||||| ||||||||    
T  14796971 gaggaatttacataaaaaattgca 14796994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 131
Target Start/End: Original strand, 14805745 - 14805868
Alignment:
Q  9 ttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatc-aaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    |||||| |||||||||  ||||||||||| |||| ||||||||||  || |||||||||||  ||| | | ||||||||   || |||||||||||||||    
T  14805745 ttgcaatacatttatacgggtttacataagaaattgcaagcaaatattcgaaaaatctaaagtaatggcctaatttataagtgtgtatataagaaattca 14805844  T
Q  108 gggaaatttacataagaaattgca 131  Q
    | | ||||||||||| ||||||||    
T  14805845 gaggaatttacataaaaaattgca 14805868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 128
Target Start/End: Original strand, 23908282 - 23908400
Alignment:
Q  9 ttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcag 108  Q
    ||||||||||||||||  ||  ||||||| |||| |||||||||| || |||||  |||| |||||||| ||||||||| | |||||||||||||||||     
T  23908282 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataataaaaaacataaagaaattgtccaatttatagggatttatataagaaattcat 23908380  T
Q  109 ggaaatttacataagaaatt 128  Q
     | |||||||| || |||||    
T  23908381 aggaatttacacaaaaaatt 23908400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 155
Target Start/End: Complemental strand, 26511766 - 26511620
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    |||||| || |||||||  | ||||| ||| |||| | ||| |||| ||||||||| |||| ||||| |  |||||| ||   |||||||||||||||||    
T  26511766 tttgcaccaaatttatagggatttacgtaagaaattgtaagtaaataatcaaaaatttaaagaaattattcaatttacaggaatttatataagaaattca 26511667  T
Q  108 gggaaatttacataagaaattgcacaaaatttaggccggagtccgggc 155  Q
    |||   |||||||||||||||||| |||| ||||||||||| ||||||    
T  26511666 ggggg-tttacataagaaattgcaaaaaaattaggccggagcccgggc 26511620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 144
Target Start/End: Original strand, 45968683 - 45968798
Alignment:
Q  29 tttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaatt 128  Q
    ||||||||| |||| ||||| |||| |||||||||||| | |||||||| ||||||||   | |||||||| |||||||||  || |||||||| | |||    
T  45968683 tttacataagaaattgcaagtaaataatcaaaaatctataaaaattgtccaatttataagagattatataaaaaattcaggagaacttacataaaatatt 45968782  T
Q  129 gcacaaaatttaggcc 144  Q
    ||| ||||||| ||||    
T  45968783 gcaaaaaatttgggcc 45968798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 128
Target Start/End: Original strand, 13131909 - 13132011
Alignment:
Q  26 aggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaa 125  Q
    |||||||||||| |||| ||||| | || |  ||||| ||||| |||||||| ||||||||| | ||||||||| ||||| || | ||||||||||||||    
T  13131909 aggtttacataagaaattgcaaggagataagtaaaaagctaaagaaattgtccaatttatagtgatttatataaaaaatttagaggaatttacataagaa 13132008  T
Q  126 att 128  Q
    |||    
T  13132009 att 13132011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 139
Target Start/End: Original strand, 42456624 - 42456698
Alignment:
Q  65 taaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgcacaaaattt 139  Q
    |||| |||||| | ||||||||| |||||||||||||||||||  | |||||||||||||||| ||| |||||||    
T  42456624 taaagaaattgcccaatttataggggtttatataagaaattcataggaatttacataagaaatagcaaaaaattt 42456698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 29149658 - 29149582
Alignment:
Q  31 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    ||||||| |||| |||||||||| || |||||  |||| |||||| | ||||||||| |||||||||||||||||||    
T  29149658 tacataagaaattgcaagcaaataataaaaaacgtaaagaaattgcccaatttataggggtttatataagaaattca 29149582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 44462549 - 44462491
Alignment:
Q  70 aaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaatt 128  Q
    |||||||| ||||||||||||||| ||||||||||||||  | |||||||||| |||||    
T  44462549 aaattgtctaatttatagaggtttgtataagaaattcagatagatttacataaaaaatt 44462491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 37189304 - 37189364
Alignment:
Q  15 cacatttataaaggtttacataaaaaatggcaagcaaattatc-aaaaatctaaataaatt 74  Q
    |||||||||| |||||||||||| |||| |||| ||||| ||| |||||| ||||||||||    
T  37189304 cacatttatagaggtttacataagaaattgcaaacaaataatcaaaaaatttaaataaatt 37189364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 8e-33; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 8 - 162
Target Start/End: Original strand, 50328790 - 50328945
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaa-tctaaataaattgtcaaatttatagaggtttatataagaaattc 106  Q
    |||||||||||||||||| |||||||||||||||| |||||  ||| || ||||| | |||| |||||||| |||||||||||||||||||||||||||     
T  50328790 tttgcaacacatttataagggtttacataaaaaattgcaagtgaataataaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaatta 50328889  T
Q  107 agggaaatttacataagaaattgcacaaaatttaggccggagtccgggctcgccgg 162  Q
    || | |||||||| ||||||||||| |||| ||  ||| ||| |||||||||||||    
T  50328890 agaggaatttacaaaagaaattgcaaaaaaattgagccagagcccgggctcgccgg 50328945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 155
Target Start/End: Complemental strand, 17888683 - 17888536
Alignment:
Q  9 ttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaa-tctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    ||||||||||||||||  ||||||||||| |||| |||||||||| || ||||| |||||| |||||| | ||||||||| || ||||||||||||||||    
T  17888683 ttgcaacacatttataggggtttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgcccaatttatagggggttatataagaaattca 17888584  T
Q  108 gggaaatttacataagaaattgcacaaaatttaggccggagtccgggc 155  Q
      | |||||||||||||||||| | ||||||| |||||||| ||||||    
T  17888583 taggaatttacataagaaattgaaaaaaatttgggccggagcccgggc 17888536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 162
Target Start/End: Original strand, 46473988 - 46474143
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattat-caaaaatctaaataaattgtcaaatttatagaggtttatataagaaattc 106  Q
    |||||||||||||||||| | ||||||||| ||||  ||||||||| || |||||||||||| |||||||  ||||||||  ||||||||||| ||||||    
T  46473988 tttgcaacacatttataaggatttacataagaaattacaagcaaataatacaaaaatctaaagaaattgtacaatttatatgggtttatataaaaaattc 46474087  T
Q  107 agggaaatttacataagaaattgcacaaaatttaggccggagtccgggctcgccgg 162  Q
    |  | |||||||||||||||||||| ||||||| ||||||||  ||||| ||||||    
T  46474088 acaggaatttacataagaaattgcaaaaaatttgggccggagctcgggcacgccgg 46474143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 47084057 - 47084147
Alignment:
Q  58 aaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgcacaaaatttaggccggag 148  Q
    ||||||||||| |||||  | ||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  47084057 aaaaatctaaagaaattacccaatttataggggtttatataagaaattcagagaaatttacataagaaattgcaaaaaatttaggccggag 47084147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 12792365 - 12792244
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatc-aaaaatctaaataaattgtcaaatttatagaggtttatataagaaattc 106  Q
    ||||||||||||||||| | ||||| |||| ||||  ||||||||| ||| |||||||||||  ||||| | ||||||||| ||||||||||||||||||    
T  12792365 tttgcaacacatttatagatgtttatataagaaatttcaagcaaataatctaaaaatctaaagtaattgcccaatttataggggtttatataagaaattc 12792266  T
Q  107 agggaaatttacataagaaatt 128  Q
    || |||||||||||||||||||    
T  12792265 agagaaatttacataagaaatt 12792244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 44 - 147
Target Start/End: Complemental strand, 10094491 - 10094387
Alignment:
Q  44 gcaagcaaattatcaaaaa-tctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgcacaaaatttagg 142  Q
    |||||||||| |||||||| ||||||||||||  | ||||||||| |||||||||||||||||||| ||||||||||||||||||| || ||||||| ||    
T  10094491 gcaagcaaataatcaaaaaatctaaataaattacccaatttataggggtttatataagaaattcagagaaatttacataagaaattacaaaaaatttggg 10094392  T
Q  143 ccgga 147  Q
    |||||    
T  10094391 ccgga 10094387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 171
Target Start/End: Original strand, 25954746 - 25954909
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    |||||||||||||||||  ||  ||||||| |||| |||||||||| || |||||| |||| |||||| | |||||||||  ||||||||||||||||||    
T  25954746 tttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggagtttatataagaaattca 25954844  T
Q  108 gggaaatttacataagaaattgcacaaaatttaggccggagtccgggctcgcc-ggccttagaac 171  Q
      | |||||||| ||||||||||| ||||||| | |||||| ||||| ||||| |||||||||||    
T  25954845 taggaatttacacaagaaattgcaaaaaatttggcccggagcccggggtcgccgggccttagaac 25954909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 138
Target Start/End: Original strand, 11054448 - 11054581
Alignment:
Q  9 ttgcaacacatttataaaggtttacataaaaaatggcaagcaaat---tatcaaaaat-ctaaataaattgtcaaatttatagaggtttatataagaaat 104  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||   ||  |||||| ||||| | |||| | ||||||||||||||||||||||||||    
T  11054448 ttgcaacacatttataaaggtttacataagaaattgcaagcaaataaataaaaaaaatactaaagagattgcccaatttatagaggtttatataagaaat 11054547  T
Q  105 tcagggaaatttacataagaaattgcacaaaatt 138  Q
    |||  |  ||||||||||||||||||| ||||||    
T  11054548 tcatagggatttacataagaaattgcaaaaaatt 11054581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 155
Target Start/End: Original strand, 31377385 - 31377531
Alignment:
Q  9 ttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaa-atctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    ||||||||||||||||  ||||||||||| |||| ||||||||||  | |||| ||||||| |||||| | |||||||||||| ||||||||||||||||    
T  31377385 ttgcaacacatttatagcggtttacataagaaattgcaagcaaatagttaaaaaatctaaagaaattgcccaatttatagagggttatataagaaattca 31377484  T
Q  108 gggaaatttacataagaaattgcacaaaatttaggccggagtccgggc 155  Q
      |  ||||||||||||||||| | ||||||| |||||||| ||||||    
T  31377485 tagggatttacataagaaattg-aaaaaatttgggccggagcccgggc 31377531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 9 - 128
Target Start/End: Complemental strand, 35322837 - 35322717
Alignment:
Q  9 ttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaa-tctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    ||||||||| ||||||  |||||| |||| |||| |||||||||| |||||||| |||||| |||||||  ||||||||||||||||||||||| |||||    
T  35322837 ttgcaacacttttataggggtttatataagaaattgcaagcaaataatcaaaaaatctaaagaaattgttcaatttatagaggtttatataagagattca 35322738  T
Q  108 gggaaatttacataagaaatt 128  Q
    | |||||||| |||| |||||    
T  35322737 gagaaatttatataaaaaatt 35322717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 8 - 155
Target Start/End: Original strand, 1535767 - 1535913
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    |||||||||||||||||  ||  ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| |||||||||||||||||||    
T  1535767 tttgcaacacatttatag-ggcatacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 1535865  T
Q  108 gggaaatttacataagaaattgcacaaaatttaggccggagtccgggc 155  Q
      |  ||||||| ||||||||||| ||||||| | |||||| ||||||    
T  1535866 tagggatttacacaagaaattgcaaaaaatttggcccggagcccgggc 1535913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 31 - 171
Target Start/End: Original strand, 34241011 - 34241152
Alignment:
Q  31 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgc 130  Q
    ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| |||||||||||||||||||  |  || |||| ||||||||||    
T  34241011 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatctacacaagaaattgc 34241110  T
Q  131 acaaaatttaggccggagtccgggctcgcc-ggccttagaac 171  Q
    | ||||||| | |||||| ||||| ||||| |||||||||||    
T  34241111 aaaaaatttggcccggagcccggggtcgccgggccttagaac 34241152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 8 - 153
Target Start/End: Complemental strand, 37801396 - 37801252
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    |||||||||||||||||  ||  ||||||| |||| |||||||||| || |||||| |||| || ||| | ||||||||| | ||||||||| |||||||    
T  37801396 tttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaatttgcccaatttatagggatttatataaaaaattca 37801298  T
Q  108 gggaaatttacataagaaattgcacaaaatttaggccggagtccgg 153  Q
      |||||||||| ||||||||||| ||||||||| |||||| ||||    
T  37801297 tagaaatttacacaagaaattgcaaaaaatttagcccggagcccgg 37801252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 20818570 - 20818693
Alignment:
Q  17 catttataaaggtttacataaaaaatggcaagcaaattatcaaaa-atctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatt 115  Q
    |||||||| |||||||||||| |||| |||| ||||| ||||||| ||||||| |||||| | |||||||||  ||||||||||||||||||  |  |||    
T  20818570 catttatagaggtttacataagaaattgcaaacaaataatcaaaaaatctaaaaaaattgaccaatttataggagtttatataagaaattcatagggatt 20818669  T
Q  116 tacataagaaattgcacaaaattt 139  Q
    |||| ||||||||||| |||||||    
T  20818670 tacaaaagaaattgcaaaaaattt 20818693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 153
Target Start/End: Original strand, 49284353 - 49284497
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    |||||||||||||||||  ||  ||||||| |||| |||| ||||| || |||||| |||| |||||| | ||||||||| |||||||||||||||||||    
T  49284353 tttgcaacacatttatag-ggcgtacataagaaattgcaaacaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 49284451  T
Q  108 gggaaatttacataagaaattgcacaaaatttaggccggagtccgg 153  Q
      |  ||||||| ||||||||||| ||||||| | |||||| ||||    
T  49284452 tagggatttacacaagaaattgcaaaaaatttggcccggagcccgg 49284497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 129
Target Start/End: Complemental strand, 9742661 - 9742545
Alignment:
Q  14 acacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaa-tctaaataaattgtcaaatttatagaggtttatataagaaattcagggaa 112  Q
    |||||||||||   |||||||||| |||| ||| | |||| |||||||| |||||| |||||| | ||||||||| |||| ||||||||||||||| | |    
T  9742661 acacatttataggtgtttacataagaaattgcatgaaaataatcaaaaaatctaaagaaattgcccaatttataggggttaatataagaaattcagagga 9742562  T
Q  113 atttacataagaaattg 129  Q
    |||||||||||||||||    
T  9742561 atttacataagaaattg 9742545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 31 - 139
Target Start/End: Complemental strand, 36012295 - 36012187
Alignment:
Q  31 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgc 130  Q
    |||||||||||| |||||||||| || |||||| |||| |||||| | ||||||||| |||||||||||||||||||  |  ||||||| || |||||||    
T  36012295 tacataaaaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaaaaaattgc 36012196  T
Q  131 acaaaattt 139  Q
    | |||||||    
T  36012195 aaaaaattt 36012187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 9 - 106
Target Start/End: Complemental strand, 322682 - 322584
Alignment:
Q  9 ttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaa-tctaaataaattgtcaaatttatagaggtttatataagaaattc 106  Q
    |||||||||||||| |   |||||||||| |||| |||||||||| |||||||| | |||| |||||||| ||||||||| ||||||||||||||||||    
T  322682 ttgcaacacatttacaggtgtttacataagaaattgcaagcaaataatcaaaaaatttaaagaaattgtccaatttataggggtttatataagaaattc 322584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 58 - 148
Target Start/End: Complemental strand, 19124821 - 19124731
Alignment:
Q  58 aaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgcacaaaatttaggccggag 148  Q
    |||||| |||| ||||||   |||||| ||| ||||||||||||||||||| | |||||||||||||||||||| |||| |||||||||||    
T  19124821 aaaaatttaaagaaattgatcaatttacagatgtttatataagaaattcagaggaatttacataagaaattgcaaaaaaattaggccggag 19124731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 107
Target Start/End: Original strand, 35018932 - 35019030
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    |||||||||||||||||| ||| ||||||| |||| |||||||||| || |||||| |||| |||||  | ||||||||  |||||||||||||||||||    
T  35018932 tttgcaacacatttataa-ggtgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattacctaatttataagggtttatataagaaattca 35019030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 139
Target Start/End: Original strand, 54090176 - 54090306
Alignment:
Q  9 ttgcaacacatttataaaggtttacataaaaaa-tggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    ||||||||||| ||||  ||||||||||||||| | |||||||||| || ||||||||||| |||||| | ||||||||   |||||||||| |||||||    
T  54090176 ttgcaacacatctatag-ggtttacataaaaaaattgcaagcaaataataaaaaatctaaaaaaattgcccaatttataagagtttatataataaattca 54090274  T
Q  108 gggaaatttacataagaaattgcacaaaattt 139  Q
    | |  ||||||| ||| ||||||| |||||||    
T  54090275 gagggatttacaaaaggaattgcaaaaaattt 54090306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 46583651 - 46583575
Alignment:
Q  31 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| |||||||||||||||||||    
T  46583651 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttataggggtttatataagaaattca 46583575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 128
Target Start/End: Original strand, 52632514 - 52632633
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    |||||||||||||||||  ||  ||||||| |||| ||||||||||  | |||||| |||| |||||| | ||||||||| | |||||||||||||||||    
T  52632514 tttgcaacacatttatag-ggcgtacataagaaattgcaagcaaatattaaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 52632612  T
Q  108 gggaaatttacataagaaatt 128  Q
      |  ||||||| ||||||||    
T  52632613 tagggatttacacaagaaatt 52632633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 171
Target Start/End: Original strand, 24992007 - 24992081
Alignment:
Q  98 aagaaattcagggaaatttacataagaaattgcacaaaatttaggccggagtccgggctcgcc-ggccttagaac 171  Q
    ||||||||||| | |||||||||| |||||| || ||||||  || |||||||| |||||||| |||||||||||    
T  24992007 aagaaattcagcggaatttacatatgaaattacaaaaaattagggtcggagtccaggctcgccgggccttagaac 24992081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 27863694 - 27863812
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    ||||||||||||||||| | |||||||||| |||| |||| ||||| || ||||||||||| |||||||| ||||||||  |||||||||||||||||||    
T  27863694 tttgcaacacatttatagatgtttacataagaaattgcaaacaaataataaaaaatctaaagaaattgtccaatttataagggtttatataagaaattca 27863793  T
Q  108 gggaaatttacataagaaa 126  Q
    | |||||||||||||||||    
T  27863794 gagaaatttacataagaaa 27863812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 128
Target Start/End: Original strand, 34103681 - 34103800
Alignment:
Q  9 ttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcag 108  Q
    |||||||||||||| |||||||||||||| |||| |||| ||||| || ||||||||||| |||||  | ||||||||  ||||||||||||||||||||    
T  34103681 ttgcaacacatttacaaaggtttacataagaaattgcaaacaaataataaaaaatctaaagaaatttcccaatttatacgggtttatataagaaattcag 34103780  T
Q  109 ggaaatttacataagaaatt 128  Q
     | ||||||||||| |||||    
T  34103781 aggaatttacataataaatt 34103800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 14 - 139
Target Start/End: Complemental strand, 13103246 - 13103120
Alignment:
Q  14 acacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaa-tctaaataaattgtcaaatttatagaggtttatataagaaattcagggaa 112  Q
    |||||||||||   |||||||| | |||| |||||||||| |||||||| |||||| |||||| | |||||||| ||||||||||||||||||||| | |    
T  13103246 acacatttataggtgtttacattagaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttataaaggtttatataagaaattcagagga 13103147  T
Q  113 atttacataagaaattgcacaaaattt 139  Q
    |||||||||| |||||||| |||||||    
T  13103146 atttacataaaaaattgcaaaaaattt 13103120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 9 - 136
Target Start/End: Complemental strand, 28750783 - 28750655
Alignment:
Q  9 ttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatct-aaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    |||||||||||||||||  |||||||||| ||||  ||||||||| ||||||||  | ||| |||||| | ||||||||| |||||||||||||||||||    
T  28750783 ttgcaacacatttataagagtttacataagaaattacaagcaaataatcaaaaaaattaaagaaattgcccaatttataggggtttatataagaaattca 28750684  T
Q  108 gggaaatttacataagaaattgcacaaaa 136  Q
    |   |||||||||||||||||||| ||||    
T  28750683 gaagaatttacataagaaattgcaaaaaa 28750655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 155
Target Start/End: Complemental strand, 9231985 - 9231840
Alignment:
Q  9 ttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcag 108  Q
    ||||||||||||||||  ||  ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| |||||||||||||||||||     
T  9231985 ttgcaacacatttatag-ggcatacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 9231887  T
Q  109 ggaaatttacataagaaattgcacaaaatttaggccggagtccgggc 155  Q
     || ||||||| ||||||||||| |||| || | |||||| ||||||    
T  9231886 agagatttacacaagaaattgcaaaaaaattggcccggagcccgggc 9231840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 8 - 155
Target Start/End: Complemental strand, 24694783 - 24694637
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    |||||||||||||||||  ||  ||||||| |||| |||||||||| || |||||| |||| |||||| | |||||||||  ||||||||||||||||||    
T  24694783 tttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggagtttatataagaaattca 24694685  T
Q  108 gggaaatttacataagaaattgcacaaaatttaggccggagtccgggc 155  Q
      |  ||||||| ||||||||||| ||||||| | |||||| ||||||    
T  24694684 tagggatttacacaagaaattgcaaaaaatttggcccggagcccgggc 24694637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 14309930 - 14309800
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    |||||||||||||||||  ||  ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| | |||||||||||||||||    
T  14309930 tttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattca 14309832  T
Q  108 gggaaatttacataagaaattgcacaaaattt 139  Q
      |  ||||||| ||||||||||| |||||||    
T  14309831 tagggatttacacaagaaattgcaaaaaattt 14309800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 11279536 - 11279634
Alignment:
Q  9 ttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    |||||||||||||||| || ||||||||| |||| |||||||||| || ||||||||||| |||||  ||||||||||    ||||||||| |||||||    
T  11279536 ttgcaacacatttatagagatttacataagaaattgcaagcaaataataaaaaatctaaagaaattaccaaatttataagaatttatataaaaaattca 11279634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 148
Target Start/End: Complemental strand, 24497645 - 24497567
Alignment:
Q  70 aaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgcacaaaatttaggccggag 148  Q
    |||||| | ||||||||| |||||||||||||||||||| | |||||||| || |||||||| ||||||| ||||||||    
T  24497645 aaattgcccaatttataggggtttatataagaaattcagaggaatttacacaaaaaattgcaaaaaatttgggccggag 24497567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 45 - 153
Target Start/End: Original strand, 13627572 - 13627680
Alignment:
Q  45 caagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgcacaaaatttaggcc 144  Q
    ||||||||| || |||||| |||| ||||||   ||||||||| |||||||||||||||||||  |  ||||||| ||||||||||| ||||||| | ||    
T  13627572 caagcaaataataaaaaatgtaaagaaattgctcaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggccc 13627671  T
Q  145 ggagtccgg 153  Q
    |||| ||||    
T  13627672 ggagcccgg 13627680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 148
Target Start/End: Complemental strand, 1728035 - 1727926
Alignment:
Q  39 aaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgcacaaaatt 138  Q
    |||| ||||| |||| || |||||| |||| ||||||   ||||||||| |||||||||||||||||||  |  ||||||| ||||||||||| ||||||    
T  1728035 aaattgcaaggaaataataaaaaatgtaaagaaattgctcaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatt 1727936  T
Q  139 taggccggag 148  Q
    | | ||||||    
T  1727935 tggcccggag 1727926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 107
Target Start/End: Original strand, 11212669 - 11212765
Alignment:
Q  11 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    ||||||||||||||    ||||||||| ||||  ||||||||| || ||||||||||| |||||| | ||||||||| | |||||| || |||||||    
T  11212669 gcaacacatttataggaatttacataagaaattacaagcaaataattaaaaatctaaagaaattgcccaatttatagggatttatagaaaaaattca 11212765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 5e-28; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 8 - 155
Target Start/End: Complemental strand, 44164875 - 44164729
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    |||||||||||||||||  ||  ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| |||||||||||||||||||    
T  44164875 tttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 44164777  T
Q  108 gggaaatttacataagaaattgcacaaaatttaggccggagtccgggc 155  Q
      |||||||||| ||||||||||| ||||||| | |||||| ||||||    
T  44164776 tagaaatttacacaagaaattgcaaaaaatttggcccggagcccgggc 44164729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 155
Target Start/End: Original strand, 10334173 - 10334320
Alignment:
Q  9 ttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaa-atctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    ||||||||||||||||  ||||||||||| |||| ||||||||||  | |||| ||||||| |||||| | ||||||||   ||||||||||||||||||    
T  10334173 ttgcaacacatttataggggtttacataagaaattgcaagcaaatattaaaaatatctaaagaaattgcccaatttataagagtttatataagaaattca 10334272  T
Q  108 gggaaatttacataagaaattgcacaaaatttaggccggagtccgggc 155  Q
    | | |||||||||||||||||||| |||| || |||| ||| ||||||    
T  10334273 gaggaatttacataagaaattgcaaaaaaattgggccagagcccgggc 10334320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 172
Target Start/End: Complemental strand, 17303248 - 17303082
Alignment:
Q  9 ttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaa--tctaaataaattgtcaaatttatagaggtttatataagaaattc 106  Q
    ||||||||||||||||  ||||||||||| |||| |||||||||| || |||||  |||||| |||||| | |||||| |  ||||||||||||||||||    
T  17303248 ttgcaacacatttatagtggtttacataagaaattgcaagcaaataataaaaaaaatctaaagaaattgcccaatttacaagggtttatataagaaattc 17303149  T
Q  107 agggaaatttacataagaaattgcacaaaatttaggccggagtccgggctcgcc-ggccttagaact 172  Q
    |  | |||||||||||||||||||| |||| || || ||||| ||||| ||||| |||| |||||||    
T  17303148 ataggaatttacataagaaattgcaaaaaaattgggtcggagcccggggtcgccaggccatagaact 17303082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 8 - 171
Target Start/End: Complemental strand, 24320571 - 24320408
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    |||||||||||||||||  ||  ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| ||||||||||||||||||     
T  24320571 tttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcg 24320473  T
Q  108 gggaaatttacataagaaattgcacaaaatttaggccggagtccgggctcg-ccggccttagaac 171  Q
      | |||||||| ||||||||||| ||||||| | |||||| ||||| ||| | |||||||||||    
T  24320472 taggaatttacacaagaaattgcaaaaaatttggcccggagcccgggttcgtcgggccttagaac 24320408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 150
Target Start/End: Complemental strand, 32876662 - 32876521
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    ||||||||||||||||| ||  | |||||| |||| |||||||||| || |||||| |||| |||||||| ||||||||| |||||||||||||||||||    
T  32876662 tttgcaacacatttatagagcgt-acataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattca 32876564  T
Q  108 gggaaatttacataagaaattgcacaaaatttaggccggagtc 150  Q
      |  || |||| ||||||||||| ||||||| | ||||||||    
T  32876563 tagggatctacacaagaaattgcaaaaaatttggcccggagtc 32876521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 162
Target Start/End: Complemental strand, 33057789 - 33057636
Alignment:
Q  9 ttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaa-tctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    ||||||||||||||||  | ||||||||| |||| |||||||||| || ||||| |||||| |||||||  ||||||||| || ||||||||||||||||    
T  33057789 ttgcaacacatttatag-gatttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgttcaatttataggggattatataagaaattca 33057691  T
Q  108 gggaaatttacataagaaattgcacaaaatttaggccggagtccgggctcgccgg 162  Q
      |  ||||||||||||||||| | |||| || |||||||| ||||| |||||||    
T  33057690 tagggatttacataagaaattgaaaaaaaattgggccggagcccggggtcgccgg 33057636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 155
Target Start/End: Original strand, 34707113 - 34707258
Alignment:
Q  9 ttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcag 108  Q
    ||||||||||||||||  ||  ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| |||||||||||||||||||     
T  34707113 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 34707211  T
Q  109 ggaaatttacataagaaattgcacaaaatttaggccggagtccgggc 155  Q
     |  ||||||| ||||||||||| ||||||| | |||||| ||||||    
T  34707212 agggatttacacaagaaattgcaaaaaatttggcccggagcccgggc 34707258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 39 - 136
Target Start/End: Original strand, 9770685 - 9770782
Alignment:
Q  39 aaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgcacaaaa 136  Q
    |||| |||||||||| ||||||| |||||| |||||||| |||| |||| |||||||||||||||||||||   ||||||||||||||||||| ||||    
T  9770685 aaattgcaagcaaataatcaaaagtctaaagaaattgtccaattcatagtggtttatataagaaattcaggatgatttacataagaaattgcaaaaaa 9770782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 29556071 - 29555951
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    |||||||||||||||||  ||  ||||||| |||| |||||||||| || |||||| |||| |||||||| ||||||||| |||||||||||||||||||    
T  29556071 tttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattca 29555973  T
Q  108 gggaaatttacataagaaattg 129  Q
      | |||||||| |||||||||    
T  29555972 taggaatttacacaagaaattg 29555951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 31 - 154
Target Start/End: Original strand, 10576691 - 10576814
Alignment:
Q  31 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgc 130  Q
    ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| |||||||||||||||||||  |  ||||||| ||||||||||    
T  10576691 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattgc 10576790  T
Q  131 acaaaatttaggccggagtccggg 154  Q
    | ||||||| | |||||| |||||    
T  10576791 aaaaaatttggcccggagcccggg 10576814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 9 - 145
Target Start/End: Complemental strand, 19334693 - 19334556
Alignment:
Q  9 ttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaa--tctaaataaattgtcaaatttatagaggtttatataagaaattc 106  Q
    |||||||| |||||||  |||||| |||| |||| |||||||||| || |||||  |||||| |||||||| ||||||||| ||||||||||||||||||    
T  19334693 ttgcaacaaatttatag-ggtttatataagaaattgcaagcaaataataaaaaaaatctaaagaaattgtccaatttataggggtttatataagaaattc 19334595  T
Q  107 agggaaatttacataagaaattgcacaaaatttaggccg 145  Q
    |  |  ||||||||||||||||||| |||| || |||||    
T  19334594 ataggtatttacataagaaattgcaaaaaaattgggccg 19334556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 136
Target Start/End: Complemental strand, 26284510 - 26284383
Alignment:
Q  9 ttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcag 108  Q
    ||||||||||||||||  |||||||| || |||| ||||| |||| || ||||||||||| |||||||| ||||||||   |||| ||||||||||||||    
T  26284510 ttgcaacacatttataggggtttacaaaagaaattgcaagaaaataataaaaaatctaaagaaattgtccaatttatactagttt-tataagaaattcag 26284412  T
Q  109 -ggaaatttacataagaaattgcacaaaa 136  Q
     || | |||||||||||||||||| ||||    
T  26284411 agggattttacataagaaattgcaaaaaa 26284383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 31 - 131
Target Start/End: Complemental strand, 29981223 - 29981123
Alignment:
Q  31 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgc 130  Q
    ||||||| |||| |||||||||| || |||||| |||| |||||||| |||||||||| ||||||||||||||||||  |  ||||||| ||||||||||    
T  29981223 tacataagaaattgcaagcaaataataaaaaatataaagaaattgtccaatttatagaagtttatataagaaattcatagggatttacacaagaaattgc 29981124  T
Q  131 a 131  Q
    |    
T  29981123 a 29981123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 31 - 155
Target Start/End: Original strand, 34259536 - 34259660
Alignment:
Q  31 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgc 130  Q
    ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| |||||||||||||||||||  |  ||||||| ||||||||||    
T  34259536 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattgc 34259635  T
Q  131 acaaaatttaggccggagtccgggc 155  Q
    | |||| || | |||||| ||||||    
T  34259636 aaaaaaattggcccggagcccgggc 34259660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 58 - 136
Target Start/End: Original strand, 15017818 - 15017896
Alignment:
Q  58 aaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgcacaaaa 136  Q
    ||||||||||| |||||||| ||||||||   ||||||||||||||||||| | |||||||||||||||||||| ||||    
T  15017818 aaaaatctaaagaaattgtccaatttatacgcgtttatataagaaattcagaggaatttacataagaaattgcaaaaaa 15017896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 155
Target Start/End: Complemental strand, 29238275 - 29238129
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    |||||||||||||||||  ||  ||||||| |||| | |||||||| || |||||| |||| ||||| || ||||| ||| |||||||||||||||||||    
T  29238275 tttgcaacacatttatag-ggcctacataagaaattgtaagcaaataataaaaaatgtaaagaaattttccaatttttaggggtttatataagaaattca 29238177  T
Q  108 gggaaatttacataagaaattgcacaaaatttaggccggagtccgggc 155  Q
      |  ||||||| ||||||||||| |||| || | |||||| ||||||    
T  29238176 tagggatttacacaagaaattgcaaaaaaattggcccggagcccgggc 29238129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 105
Target Start/End: Original strand, 41853128 - 41853226
Alignment:
Q  9 ttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatc--aaaaatctaaataaattgtcaaatttatagaggtttatataagaaatt 105  Q
    |||||||||||||||| ||||||| ||| ||||| |||||||||| |||  ||||||||||| |||||||| || ||||||   |||| ||||||||||    
T  41853128 ttgcaacacatttatagaggtttatatagaaaattgcaagcaaataatcaaaaaaatctaaaaaaattgtccaacttataggaatttaaataagaaatt 41853226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 136
Target Start/End: Original strand, 43342486 - 43342533
Alignment:
Q  89 ggtttatataagaaattcagggaaatttacataagaaattgcacaaaa 136  Q
    |||||||||||||||||||| | |||||||||||||||||||| ||||    
T  43342486 ggtttatataagaaattcagaggaatttacataagaaattgcaaaaaa 43342533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 8e-27; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 8 - 153
Target Start/End: Original strand, 35806790 - 35806934
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    |||||||||||||||||  ||| ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| |||||||||||||||||||    
T  35806790 tttgcaacacatttatag-ggtgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 35806888  T
Q  108 gggaaatttacataagaaattgcacaaaatttaggccggagtccgg 153  Q
      || ||||||| ||||||||||| ||||||| | |||||| ||||    
T  35806889 tagagatttacacaagaaattgcaaaaaatttggcccggagcccgg 35806934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 155
Target Start/End: Original strand, 42072424 - 42072570
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    |||||||||||||||||  | ||||||||| |||| |||||||||| || |||||| |||| |||||||| ||||||||| |||||||||||||||||||    
T  42072424 tttgcaacacatttatattg-tttacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattca 42072522  T
Q  108 gggaaatttacataagaaattgcacaaaatttaggccggagtccgggc 155  Q
      |  ||||||| ||||||||||| |||| || | |||||| ||||||    
T  42072523 tagggatttacacaagaaattgcaaaaaaattggcccggagcccgggc 42072570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 8 - 139
Target Start/End: Original strand, 21525354 - 21525484
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    |||||||||||||||||  ||  ||||||| |||| |||||||||| || |||||| |||| |||||||| ||||||||| |||||||||||||||||||    
T  21525354 tttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattca 21525452  T
Q  108 gggaaatttacataagaaattgcacaaaattt 139  Q
      |  ||||||| ||||||||||| |||||||    
T  21525453 tagggatttacacaagaaattgcaaaaaattt 21525484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 33934501 - 33934371
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    |||||||||||||||||  ||  ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| |||||||||||||||||||    
T  33934501 tttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataataaaaaatataaaaaaattgcccaatttataggggtttatataagaaattca 33934403  T
Q  108 gggaaatttacataagaaattgcacaaaattt 139  Q
      | |||||||| ||||||||||| |||||||    
T  33934402 taggaatttacaaaagaaattgcaaaaaattt 33934371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 153
Target Start/End: Original strand, 19334778 - 19334923
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaa-aatctaaataaattgtcaaatttatagaggtttatataagaaattc 106  Q
    ||||||||| |||||||  |||| |||||| |||| | |||||||| || ||| ||| |||| |||||||| ||||||||||||||||||||| ||||||    
T  19334778 tttgcaacatatttataggggtt-acataagaaattgtaagcaaataataaaacaatttaaagaaattgtctaatttatagaggtttatataaaaaattc 19334876  T
Q  107 agggaaatttacataagaaattgcacaaaatttaggccggagtccgg 153  Q
    |    |||||| ||||||||||||| ||||||| ||||||| |||||    
T  19334877 ataagaatttatataagaaattgcaaaaaatttgggccggaatccgg 19334923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 9 - 155
Target Start/End: Original strand, 22324593 - 22324738
Alignment:
Q  9 ttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcag 108  Q
    ||||||||||||||||  ||  ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| |||||||||||||||||||     
T  22324593 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 22324691  T
Q  109 ggaaatttacataagaaattgcacaaaatttaggccggagtccgggc 155  Q
     |  ||||||| |||||||| || ||||||| | |||||| ||||||    
T  22324692 agggatttacacaagaaattacaaaaaatttggcccggagcccgggc 22324738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 70 - 147
Target Start/End: Complemental strand, 16591446 - 16591369
Alignment:
Q  70 aaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgcacaaaatttaggccgga 147  Q
    |||||| | ||||||||| | ||||||||||||||||   |||||||||||||||||||||| |||||||||||||||    
T  16591446 aaattgcccaatttatagtgatttatataagaaattcttagaaatttacataagaaattgcaaaaaatttaggccgga 16591369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 139
Target Start/End: Original strand, 42013890 - 42013998
Alignment:
Q  31 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgc 130  Q
    ||||||| |||| |||||||||| || |||||| |||| |||||| | |||||||||  ||||||||||||||||||  |  ||||||| ||||||||||    
T  42013890 tacataagaaattgcaagcaaataataaaaaatataaagaaattgcccaatttataggagtttatataagaaattcatagggatttacacaagaaattgc 42013989  T
Q  131 acaaaattt 139  Q
    | |||||||    
T  42013990 aaaaaattt 42013998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 16819105 - 16818970
Alignment:
Q  12 caacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaata----aattgtcaaatttatagaggtttatataagaaattca 107  Q
    |||||||||||||  |||||| ||||||||| |||||||||| || ||| | ||| |||    ||||  | ||||||||| |||||||||||||||||||    
T  16819105 caacacatttataggggtttatataaaaaattgcaagcaaataataaaata-ctagatagagaaattacccaatttataggggtttatataagaaattca 16819007  T
Q  108 gggaaatttacataagaaattgcacaaaatttaggcc 144  Q
     ||| ||||||| ||||||||||| ||||||| ||||    
T  16819006 aggagatttacaaaagaaattgcaaaaaatttgggcc 16818970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 28 - 131
Target Start/End: Original strand, 24065288 - 24065391
Alignment:
Q  28 gtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaat 127  Q
    |||||||||| |||| |||||||||| || ||||| ||||| |||||| | |||||||||  ||||||||||||||||||  || ||||| || ||||||    
T  24065288 gtttacataagaaattgcaagcaaataataaaaaagctaaagaaattgcccaatttataggagtttatataagaaattcatagagatttatatgagaaat 24065387  T
Q  128 tgca 131  Q
    ||||    
T  24065388 tgca 24065391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 156
Target Start/End: Original strand, 26021391 - 26021539
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaa-tctaaataaattgtcaaatttatagaggtttatataagaaattc 106  Q
    |||||||||||||||||  ||  ||||||| |||| |||||||||| || ||||| | |||| |||||  | ||||||||| ||||||||||||||||||    
T  26021391 tttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataataaaaaaatgtaaagaaattacccaatttataggggtttatataagaaattc 26021489  T
Q  107 agggaaatttacataagaaattgcacaaaatttaggccggagtccgggct 156  Q
    |  |  ||||||| ||||||||||| ||||||| |  ||||| |||||||    
T  26021490 atagggatttacaaaagaaattgcaaaaaatttggcacggagcccgggct 26021539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 136
Target Start/End: Original strand, 10112042 - 10112170
Alignment:
Q  9 ttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaat-aaattgtcaaatttatagaggtttatataagaaattca 107  Q
    |||||||| |||||||  ||||||||||| |||| ||||  |||| ||||||||  ||||  |||||||| ||||||||   |||||||||||||||| |    
T  10112042 ttgcaacatatttataggggtttacataagaaattgcaaataaataatcaaaaaattaaaagaaattgtccaatttataagagtttatataagaaattaa 10112141  T
Q  108 gggaaatttacataagaaattgcacaaaa 136  Q
    | | ||||||||||| |||||||| ||||    
T  10112142 gaggaatttacataaaaaattgcaaaaaa 10112170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 153
Target Start/End: Original strand, 2271240 - 2271335
Alignment:
Q  58 aaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgcacaaaatttaggccggagtccgg 153  Q
    ||||||||||| |||||  | ||| ||||| ||||||||||||||||||||    ||||||||||||||||||| |||| ||||| | ||||||||    
T  2271240 aaaaatctaaagaaattacctaatatataggggtttatataagaaattcagcatgatttacataagaaattgcaaaaaaattaggtctgagtccgg 2271335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 155
Target Start/End: Complemental strand, 2824314 - 2824168
Alignment:
Q  9 ttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcag 108  Q
    |||||||||||||| |   |||||||||| |||| |||||||||||  |||| |   ||| || ||| | ||||||||  || |||||||||||||| ||    
T  2824314 ttgcaacacatttaaaggtgtttacataagaaattgcaagcaaatttgcaaataataaaaaaatttgcccaatttataaggggttatataagaaatttag 2824215  T
Q  109 ggaaatttacataagaaattgcacaaaatttaggccggagtccgggc 155  Q
     | ||||||||||| |||||||| |||||| ||| ||||| ||||||    
T  2824214 aggaatttacataaaaaattgcaaaaaattcaggtcggagcccgggc 2824168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 139
Target Start/End: Complemental strand, 43282984 - 43282853
Alignment:
Q  9 ttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaat-ctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    |||||| ||||||||| |  ||||||||| |||| |||||||||| || |||| | ||||  |||||  | ||||||||| | ||||||||| |||||||    
T  43282984 ttgcaatacatttatagatatttacataagaaatagcaagcaaataataaaaatttctaatgaaattacccaatttatagggatttatataataaattca 43282885  T
Q  108 gggaaatttacataagaaattgcacaaaattt 139  Q
    |   |||||||||||||||||| | |||||||    
T  43282884 gaagaatttacataagaaattgtaaaaaattt 43282853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 128
Target Start/End: Original strand, 21488111 - 21488181
Alignment:
Q  58 aaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaatt 128  Q
    ||||||||||| |||||||| ||||||| | ||||| |||||||||||||  | |||||||| ||||||||    
T  21488111 aaaaatctaaagaaattgtccaatttatcggggtttctataagaaattcaaaggaatttacacaagaaatt 21488181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 148
Target Start/End: Original strand, 16523155 - 16523241
Alignment:
Q  62 atctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgcacaaaatttaggccggag 148  Q
    ||||||| || ||| | ||||||||| | |||||||||||||||||  |  ||||||||| ||||||| | ||||||| ||||||||    
T  16523155 atctaaagaagttgcccaatttatagggatttatataagaaattcatagggatttacatatgaaattgtaaaaaatttgggccggag 16523241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 16523064 - 16523109
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaat 53  Q
    |||||||||||||||| | ||||| |||||||||| ||||||||||    
T  16523064 tttgcaacacatttatgagggtttgcataaaaaattgcaagcaaat 16523109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 155
Target Start/End: Complemental strand, 14942176 - 14942030
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    |||||||||||||||||| ||  ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| |||||||||||||||||||    
T  14942176 tttgcaacacatttataa-ggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 14942078  T
Q  108 gggaaatttacataagaaattgcacaaaatttaggccggagtccgggc 155  Q
      |  ||||||| ||||||||||| ||||||| | |||||| ||||||    
T  14942077 tagggatttacacaagaaattgcaaaaaatttggcccggagcccgggc 14942030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 9 - 155
Target Start/End: Original strand, 29846439 - 29846584
Alignment:
Q  9 ttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcag 108  Q
    ||||||||||||||||  ||  ||||||| |||| |||||||||| || |||||| |||| |||||||| ||||||||| |||||||||||||||||||     
T  29846439 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattcat 29846537  T
Q  109 ggaaatttacataagaaattgcacaaaatttaggccggagtccgggc 155  Q
     |  ||||||| ||||||||||| ||||||| | |||||| ||||||    
T  29846538 agggatttacacaagaaattgcaaaaaatttggcccggagcccgggc 29846584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 128
Target Start/End: Original strand, 40780050 - 40780171
Alignment:
Q  9 ttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaa-tctaaataaattgtcaaatttatagag-gtttatataagaaattc 106  Q
    |||||||| |||||||  ||||||||||| |||| |||||||||| || ||||| | |||| |||||||||||||||||| | |||||||||||||||||    
T  40780050 ttgcaacatatttatagcggtttacataagaaattgcaagcaaataattaaaaaatttaaaaaaattgtcaaatttatagggtgtttatataagaaattc 40780149  T
Q  107 agggaaatttacataagaaatt 128  Q
    || | |||||||||||||||||    
T  40780150 agaggaatttacataagaaatt 40780171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 8 - 139
Target Start/End: Original strand, 19181544 - 19181674
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    |||||||||||||||||  ||  ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| |||||||||||||||||||    
T  19181544 tttgcaacacatttatag-ggcatacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 19181642  T
Q  108 gggaaatttacataagaaattgcacaaaattt 139  Q
      | |||||||| ||||||||||| |||||||    
T  19181643 taggaatttacacaagaaattgcaaaaaattt 19181674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 8 - 155
Target Start/End: Complemental strand, 42769890 - 42769744
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    |||||||||||||||||  ||  ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| |||||||||||||||||||    
T  42769890 tttgcaacacatttatag-ggcatacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 42769792  T
Q  108 gggaaatttacataagaaattgcacaaaatttaggccggagtccgggc 155  Q
      |  ||||||| ||||||||||| ||||||| | |||||| ||||||    
T  42769791 tagggatttacacaagaaattgcaaaaaatttggcccggagcccgggc 42769744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 23685503 - 23685406
Alignment:
Q  9 ttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaa-atctaaataaattgtcaaatttatagaggtttatataagaaatt 105  Q
    |||||||| |||||||| ||||||||||| |||| |||||||||| ||||||| || ||||||||||||||||||||||  | |||||||||||||||    
T  23685503 ttgcaacatatttataagggtttacataagaaattgcaagcaaataatcaaaatatataaataaattgtcaaatttataaggatttatataagaaatt 23685406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 171
Target Start/End: Complemental strand, 28321836 - 28321672
Alignment:
Q  9 ttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaat-aaattgtcaaatttatagaggtttatataagaaattca 107  Q
    ||||||||||||||||  |||||| |||| |||| | |||||||| ||||||||  | ||| |||||| | ||||||||  ||||||||||||| |||||    
T  28321836 ttgcaacacatttataggggtttatataagaaattggaagcaaataatcaaaaaattcaatgaaattgcccaatttataagggtttatataagatattca 28321737  T
Q  108 gggaaatttacataagaaattgcacaaaatttaggccggagtccgggctcgcc-ggccttagaac 171  Q
    ||  |||||||||||||||||||| |||| || |||  | | ||||||||||| |||||||||||    
T  28321736 ggagaatttacataagaaattgcaaaaaaattgggcaagtgcccgggctcgccgggccttagaac 28321672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 8 - 107
Target Start/End: Complemental strand, 1387421 - 1387322
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    |||||||||||||| ||| ||||||||||| |||| |||||||||| || ||||||||||| |||||  | ||||||||| ||||||| |||||||||||    
T  1387421 tttgcaacacatttgtaagggtttacataagaaattgcaagcaaataataaaaaatctaaagaaattacccaatttataggggtttatctaagaaattca 1387322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 131
Target Start/End: Complemental strand, 41674841 - 41674716
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaat--tatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaatt 105  Q
    |||||||||||||||||  | |||| |||| |||| ||||||||||  |   ||||||||||| |||||||| ||||||||  ||||||||||| |||||    
T  41674841 tttgcaacacatttatagggatttatataagaaattgcaagcaaatagttaaaaaaatctaaagaaattgtccaatttataagggtttatataaaaaatt 41674742  T
Q  106 cagggaaatttacataagaaattgca 131  Q
    ||| || |||||||||||||||||||    
T  41674741 cagagagatttacataagaaattgca 41674716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 14539838 - 14539706
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaa-tctaaataaattgtcaaatttatagaggtttatataagaaattc 106  Q
    |||||||||||||||||   ||||| |||| |||| ||||| |||| || ||||| |||||| |||||| | |||||||||   ||||||||||||||||    
T  14539838 tttgcaacacatttataggtgtttatataagaaattgcaagaaaataataaaaaaatctaaagaaattgcctaatttataggaatttatataagaaattc 14539739  T
Q  107 agggaaatttacataagaaattgcacaaaattt 139  Q
    || | || ||||||||||||||||| |||||||    
T  14539738 agaggaaattacataagaaattgcaaaaaattt 14539706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 33009666 - 33009800
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatca--aaaatctaaataaattgtcaaatttatagaggtttatataagaaatt 105  Q
    |||||||||| ||||||  |||||||||||||||| |||||||||| || |  |||||||||| |||||||| ||||||||  | ||||||||| |||||    
T  33009666 tttgcaacacgtttatatgggtttacataaaaaattgcaagcaaataataataaaaatctaaagaaattgtccaatttataaggatttatataacaaatt 33009765  T
Q  106 cagggaaatttacataagaaattgcacaaaattta 140  Q
    ||  |  ||||| ||||||||||| | ||||||||    
T  33009766 catagggatttatataagaaattgtaaaaaattta 33009800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 153
Target Start/End: Complemental strand, 40277420 - 40277276
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    |||||||||||||||||  ||  ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| | ||||||||||||||| |    
T  40277420 tttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattta 40277322  T
Q  108 gggaaatttacataagaaattgcacaaaatttaggccggagtccgg 153  Q
      |  |||||||||| |||||||| ||||||| | |||||| ||||    
T  40277321 tagggatttacataaaaaattgcaaaaaatttggcccggagcccgg 40277276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 148
Target Start/End: Complemental strand, 14186570 - 14186431
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    |||||||||||||||||  ||  ||||||| |||| |||||||||| || |||| | |||| |||||| | ||||||||| |||||||||||||||||||    
T  14186570 tttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataataaaaagtgtaaagaaattgcccaatttataggggtttatataagaaattca 14186472  T
Q  108 gggaaatttacataagaaattgcacaaaatttaggccggag 148  Q
      |  ||||||| |||||||| || ||||||| | ||||||    
T  14186471 tagggatttacacaagaaattacaaaaaatttggcccggag 14186431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 9 - 129
Target Start/End: Original strand, 3956567 - 3956688
Alignment:
Q  9 ttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaa-tctaaataaattgtcaaatttatagaggtttatataagaaattca 107  Q
    |||||||||||||||| ||||||||||   |||| |||||||||| || ||||| | |||| |||||||| |||||| || ||||||||||| |||||||    
T  3956567 ttgcaacacatttatagaggtttacatttgaaattgcaagcaaataataaaaaattttaaagaaattgtccaatttacaggggtttatataataaattca 3956666  T
Q  108 gggaaatttacataagaaattg 129  Q
      |  |||||||||| ||||||    
T  3956667 tagggatttacataaaaaattg 3956688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 129
Target Start/End: Complemental strand, 6318592 - 6318470
Alignment:
Q  9 ttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaa--tctaaataaattgtcaaatttatagaggtttatataagaaattc 106  Q
    ||||||||||||||||  || ||||||   |||| |||||||||| || |||||  |||||| |||||| | ||||||||| | ||||||||||||||||    
T  6318592 ttgcaacacatttataggggcttacatttgaaattgcaagcaaataataaaaaaaatctaaagaaattgcccaatttatagggatttatataagaaattc 6318493  T
Q  107 agggaaatttacataagaaattg 129  Q
    |  |  |||||||||||||||||    
T  6318492 atagggatttacataagaaattg 6318470  T

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Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 136
Target Start/End: Original strand, 43139760 - 43139870
Alignment:
Q  28 gtttacataaaaaatggcaagcaaattatcaaaa--atctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaa 125  Q
    ||||| |||| |||| |||||||||| || ||||  ||||||| ||||||   ||||||||| ||||||||||||||||| || | || |||||||||||    
T  43139760 gtttatataagaaattgcaagcaaataataaaaaaaatctaaagaaattgctcaatttataggggtttatataagaaattaagaggaacttacataagaa 43139859  T
Q  126 attgcacaaaa 136  Q
    |||||| ||||    
T  43139860 attgcaaaaaa 43139870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 128
Target Start/End: Original strand, 2888086 - 2888156
Alignment:
Q  58 aaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaatt 128  Q
    ||||||||||| |||||||  |||||||||  |||||||||| |||||||  || ||||||||||||||||    
T  2888086 aaaaatctaaaaaaattgttcaatttataggagtttatataaaaaattcatagagatttacataagaaatt 2888156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 105
Target Start/End: Original strand, 25665222 - 25665316
Alignment:
Q  12 caacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatct-aaataaattgtcaaatttatagaggtttatataagaaatt 105  Q
    ||||| |||||||  |||||  ||||||||| |||||||||| |||||||| || ||| |||||  | |||||||| | ||||||||||||||||    
T  25665222 caacatatttatagcggtttgtataaaaaattgcaagcaaataatcaaaaaacttaaagaaattacccaatttataaatgtttatataagaaatt 25665316  T

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Target: scaffold0086 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 58 - 171
Target Start/End: Complemental strand, 20914 - 20800
Alignment:
Q  58 aaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgcacaaaatttaggccggagtccgggctc 157  Q
    ||||||||||| |||||||| ||||||||||| |||||||||||||||||| | |||||||||||||||||||| |||| || | |||||  || |||||    
T  20914 aaaaatctaaaaaaattgtccaatttatagagctttatataagaaattcagaggaatttacataagaaattgcaaaaaaatttgaccggatccctggctc 20815  T
Q  158 gcc-ggccttagaac 171  Q
    ||| |||||||||||    
T  20814 gccgggccttagaac 20800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 28 - 136
Target Start/End: Complemental strand, 34566 - 34457
Alignment:
Q  28 gtttacataaaaaatggcaagcaaattatcaaaaa-tctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaa 126  Q
    |||||||||| |||| | |||||||| |||||||| |||||| ||| |||| ||||||||||| |||||||||  ||||||| |  ||||||||||||||    
T  34566 gtttacataagaaattgtaagcaaataatcaaaaaatctaaagaaactgtccaatttatagagatttatataaagaattcagagggatttacataagaaa 34467  T
Q  127 ttgcacaaaa 136  Q
    ||||| ||||    
T  34466 ttgcaaaaaa 34457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 85505 - 85550
Alignment:
Q  8 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaat 53  Q
    ||||||||| ||||||| |||||||||||| |||| ||||||||||    
T  85505 tttgcaacatatttatagaggtttacataagaaattgcaagcaaat 85550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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