View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17148_low_23 (Length: 275)

Name: NF17148_low_23
Description: NF17148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17148_low_23
NF17148_low_23
[»] chr5 (15 HSPs)
chr5 (19-267)||(8529029-8529277)
chr5 (22-266)||(8535590-8535840)
chr5 (21-267)||(1600066-1600316)
chr5 (22-267)||(9074492-9074740)
chr5 (37-267)||(8641475-8641720)
chr5 (32-241)||(2856682-2856897)
chr5 (32-241)||(2874292-2874507)
chr5 (19-105)||(8636953-8637039)
chr5 (32-241)||(2844855-2845070)
chr5 (19-264)||(8644298-8644546)
chr5 (34-99)||(2904938-2905003)
chr5 (37-105)||(8677918-8677986)
chr5 (34-164)||(8547984-8548108)
chr5 (191-265)||(2904774-2904848)
chr5 (203-264)||(8637140-8637201)
[»] chr4 (1 HSPs)
chr4 (19-267)||(9443190-9443438)
[»] chr7 (2 HSPs)
chr7 (22-267)||(48361618-48361869)
chr7 (26-233)||(35779921-35780119)
[»] chr1 (2 HSPs)
chr1 (22-111)||(26324198-26324287)
chr1 (122-241)||(5130959-5131081)
[»] chr6 (1 HSPs)
chr6 (34-164)||(16716447-16716577)
[»] scaffold0627 (1 HSPs)
scaffold0627 (21-164)||(4735-4878)


Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 267
Target Start/End: Original strand, 8529029 - 8529277
Alignment:
Q  19 ccaaaggattgaacgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8529029 ccaaaggattgaacgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggt 8529128  T
Q  119 cggatcacaaatgtatagaaatccctttaattctcccatgctaataggcctacaacaaaaaacattatgatttccaaacacatgtggaggagaaggaaat 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  8529129 cggatcacaaatgtatagaaatccctttaattctcccatgctaataggcctacaacaaaaaacattatgatttccaaacacatgtggaggagaaggaaac 8529228  T
Q  219 gactgcaacctctcattttcaaagcagaaaaccaatattgacctttgct 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8529229 gactgcaacctctcattttcaaagcagaaaaccaatattgacctttgct 8529277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 22 - 266
Target Start/End: Original strand, 8535590 - 8535840
Alignment:
Q  22 aaggattgaacgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcgg 121  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||     
T  8535590 aaggattgaatgaagtatcaatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacatcagataaaaaggtcga 8535689  T
Q  122 atcacaaatgtatagaaatccctttaattctcccatgctaataggcctacaacaaaaaa------cattatgatttccaaacacatgtggaggagaagga 215  Q
    |||||||||||| |||||||||||||||||||||||||||||| | |||  || || ||       |||||||||||||||||  |||||||||||||||    
T  8535690 atcacaaatgtaaagaaatccctttaattctcccatgctaatatgtctattactaagaaatccattattatgatttccaaacatctgtggaggagaagga 8535789  T
Q  216 aatgactgcaacctctcattttcaaagcagaaaaccaatattgacctttgc 266  Q
    ||||||| || | ||||| ||||||||||||||| ||||||||||||||||    
T  8535790 aatgacttcagcgtctcactttcaaagcagaaaatcaatattgacctttgc 8535840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 21 - 267
Target Start/End: Complemental strand, 1600316 - 1600066
Alignment:
Q  21 aaaggattgaacgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcg 120  Q
    ||||||||||| |||||||||   ||||||| |||||||||||||||| ||||||||||||| |||||||||||||||| ||||| ||||| |||||| |    
T  1600316 aaaggattgaatgaagtatcgtacttgtaaaccttagtccatgattcttcaatgccatattccttcataacccacattggaacatcagataaaaaggtag 1600217  T
Q  121 gatcacaaatgtatagaaatccctttaattctcccatgctaataggcc---tacaacaa---aaaacattatgatttccaaacacatgtggaggagaagg 214  Q
      ||||||||||| |||||||||||||||||||||||||||| | | |   ||| ||||     |  |||||||||||||||| ||||||||||||||||    
T  1600216 --tcacaaatgtaaagaaatccctttaattctcccatgctaacatggctgttaccacaagttccattattatgatttccaaactcatgtggaggagaagg 1600119  T
Q  215 aaatgactgcaacctctcattttcaaagcagaaaaccaatattgacctttgct 267  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||| ||||||    
T  1600118 aaatgactgcaacctctcactttcaaaacagaaaaccaatattgacatttgct 1600066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 22 - 267
Target Start/End: Complemental strand, 9074740 - 9074492
Alignment:
Q  22 aaggattgaacgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcgg 121  Q
    ||||||||||||||||||| ||||||||||  ||||||||||||||| |||| |||||||||||||||||||||| |||||||| ||||| ||| |||      
T  9074740 aaggattgaacgaagtatcaatgttgtaaactttagtccatgattcttcaataccatattcattcataacccacactgaaacatcagataaaaatgtcca 9074641  T
Q  122 atcacaaatgtatagaaatccctttaattctcccatgcta-ataggcctacaacaa--aaaacattatgatttccaaacacatgtggaggagaaggaaat 218  Q
     ||||||||||| |||||||||||||||||||||||| ||  |  |    ||||||    |  |||||| |||||||||||||| |||||||||||||||    
T  9074640 gtcacaaatgtaaagaaatccctttaattctcccatgatatgtctgttatcaacaattccactattatggtttccaaacacatgcggaggagaaggaaat 9074541  T
Q  219 gactgcaacctctcattttcaaagcagaaaaccaatattgacctttgct 267  Q
    ||||||||||||||| ||||||| ||||||| |||||||||||||||||    
T  9074540 gactgcaacctctcactttcaaaacagaaaaacaatattgacctttgct 9074492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 37 - 267
Target Start/End: Original strand, 8641475 - 8641720
Alignment:
Q  37 tatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcg------gatcacaaat 130  Q
    |||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||  |||| | | | ||||||||      ||||||||||    
T  8641475 tatcaatgttgtaagccttagtccatgattctccaatgccatattcattcataacccacactgtgacatcaaagaaaaaggtcgagtcacgatcacaaat 8641574  T
Q  131 gtatagaaatccctttaattctcccatgctaataggcctacaacaaaaaac---------attatgatttccaaacacatgtggaggagaaggaaatgac 221  Q
    |||  ||||||||||||| ||||||||||||||| ||||   || |  ||          ||||||||||||||||||||||||||||||||||||| ||    
T  8641575 gtaaggaaatccctttaactctcccatgctaataagcctgttaccatgaattccattattattatgatttccaaacacatgtggaggagaaggaaataac 8641674  T
Q  222 tgcaacctctcattttcaaagcagaaaaccaatattgacctttgct 267  Q
    | ||| |||||| |||| || ||||||   ||||||||||||||||    
T  8641675 ttcaatctctcactttccaaacagaaacataatattgacctttgct 8641720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 32 - 241
Target Start/End: Complemental strand, 2856897 - 2856682
Alignment:
Q  32 cgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatg 131  Q
    ||||||||| ||||||||||   ||||||||||||||||||||||||||||||||||||||||||||| ||||||    | | | |    || |||||||    
T  2856897 cgaagtatcaatgttgtaaacaatagtccatgattctccaatgccatattcattcataacccacattgtaacattctcgagagacgatctatgacaaatg 2856798  T
Q  132 tatagaaatccctttaattctcccatgctaataggc---ctacaacaaaaaacatt---atgatttccaaacacatgtggaggagaaggaaatgactgca 225  Q
    || ||||||||||| ||||||||||  |||||||||   |||     |||  ||||   ||||||||||||||||||||||||||||||||| |||||||    
T  2856797 taaagaaatcccttcaattctcccaatctaataggcatgctatggggaaatccattatcatgatttccaaacacatgtggaggagaaggaaacgactgca 2856698  T
Q  226 acctctcattttcaaa 241  Q
    |||||||| |||||||    
T  2856697 acctctcactttcaaa 2856682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 32 - 241
Target Start/End: Complemental strand, 2874507 - 2874292
Alignment:
Q  32 cgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatg 131  Q
    ||||||||| ||||||||||   ||||||||||||||||||||||||||||||||||||||||||||| ||||||    | | | |    || |||||||    
T  2874507 cgaagtatcaatgttgtaaacaatagtccatgattctccaatgccatattcattcataacccacattgtaacattctcgagagacgatctatgacaaatg 2874408  T
Q  132 tatagaaatccctttaattctcccatgctaataggc---ctacaacaaaaaacatt---atgatttccaaacacatgtggaggagaaggaaatgactgca 225  Q
    || ||||||||||| ||||||||||  |||||||||   |||     |||  ||||   ||||||||||||||||||||||||||||||||| |||||||    
T  2874407 taaagaaatcccttcaattctcccaatctaataggcatgctatggggaaatccattatcatgatttccaaacacatgtggaggagaaggaaacgactgca 2874308  T
Q  226 acctctcattttcaaa 241  Q
    |||||||| |||||||    
T  2874307 acctctcactttcaaa 2874292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 8636953 - 8637039
Alignment:
Q  19 ccaaaggattgaacgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacat 105  Q
    |||||||| ||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8636953 ccaaaggactgaccaaagtatcgatgttgtaaaccttagtccatgattctccaatgccatattcattcataacccacattgcaacat 8637039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 32 - 241
Target Start/End: Complemental strand, 2845070 - 2844855
Alignment:
Q  32 cgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatg 131  Q
    ||||||||| ||| ||||||   ||||||||||||||||||||||||||||||||||||||||||||| ||||||    | | | |    || |||||||    
T  2845070 cgaagtatcaatgctgtaaacaatagtccatgattctccaatgccatattcattcataacccacattgtaacattctcaagagacgatatatgacaaatg 2844971  T
Q  132 tatagaaatccctttaattctcccatgctaataggc---ctacaacaaaaaacatt---atgatttccaaacacatgtggaggagaaggaaatgactgca 225  Q
    || ||||||||||| ||||||||||  |||||||||   |||     |||  ||||   ||||||||||||||||||||||||||||||||| |||||||    
T  2844970 taaagaaatcccttcaattctcccaatctaataggcatgctaaggggaaatccattatcatgatttccaaacacatgtggaggagaaggaaacgactgca 2844871  T
Q  226 acctctcattttcaaa 241  Q
    |||||||| |||||||    
T  2844870 acctctcactttcaaa 2844855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 264
Target Start/End: Original strand, 8644298 - 8644546
Alignment:
Q  19 ccaaaggattgaacgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacatta-gatataaagg 117  Q
    |||||||| ||| | ||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||| | || |  ||      
T  8644298 ccaaaggactgatcaaagtatcaatgttgtaaaccttagtccatgattctccaatgtcatattcattcataacccacattgcaacatcacgaaaagaata 8644397  T
Q  118 tcggatcacaaatgtatagaaatccctttaattctcccatgctaataggc---ctacaacaaaaaacatta---tgatttccaaacacatgtggaggaga 211  Q
    | | ||| |||||||| || |||||| ||||||||||||||| |||| ||    ||| || |||  |||||   ||||||  ||||||   |||||||||    
T  8644398 t-gtatcgcaaatgtaaagtaatccccttaattctcccatgcgaatacgctcgttacgacgaaatccattattttgattttgaaacac---tggaggaga 8644493  T
Q  212 aggaaatgactgcaacctctcattttcaaagcagaaaaccaatattgaccttt 264  Q
    ||||||||| |||||||||||| ||||||| ||||||  |||||| |||||||    
T  8644494 aggaaatgattgcaacctctcactttcaaaacagaaacacaatatagaccttt 8644546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 2905003 - 2904938
Alignment:
Q  34 aagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattg 99  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2905003 aagtatcaatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattg 2904938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 105
Target Start/End: Original strand, 8677918 - 8677986
Alignment:
Q  37 tatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacat 105  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  8677918 tatcaatgttgtaaaccttagtccatgattctccaatgccatattcattcatatcccacattgcaacat 8677986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 34 - 164
Target Start/End: Complemental strand, 8548108 - 8547984
Alignment:
Q  34 aagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatgta 133  Q
    ||||||| |||| |||||||||||||||||| ||||||      ||||| |||||||||||||||| ||||| ||| | | || ||   |||||||||||    
T  8548108 aagtatcaatgtggtaaatcttagtccatgactctcca------tattcgttcataacccacattgtaacataagagagatagttccagtcacaaatgta 8548015  T
Q  134 tagaaatccctttaattctcccatgctaata 164  Q
     ||| |||||||||||||||||| |||||||    
T  8548014 aagacatccctttaattctcccaagctaata 8547984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 191 - 265
Target Start/End: Complemental strand, 2904848 - 2904774
Alignment:
Q  191 tccaaacacatgtggaggagaaggaaatgactgcaacctctcattttcaaagcagaaaaccaatattgacctttg 265  Q
    |||||||| ||||||||||||||||||||| |||| ||||||| ||||||| | ||||  |||||||||| ||||    
T  2904848 tccaaacatatgtggaggagaaggaaatgattgcatcctctcactttcaaaactgaaacacaatattgacttttg 2904774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 264
Target Start/End: Original strand, 8637140 - 8637201
Alignment:
Q  203 tggaggagaaggaaatgactgcaacctctcattttcaaagcagaaaaccaatattgaccttt 264  Q
    |||||||||||||||||| ||||||||||||||||| || ||||||  |||||| |||||||    
T  8637140 tggaggagaaggaaatgattgcaacctctcattttctaaacagaaacacaatatagaccttt 8637201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 267
Target Start/End: Original strand, 9443190 - 9443438
Alignment:
Q  19 ccaaaggattgaacgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9443190 ccaaaggattgaacgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggt 9443289  T
Q  119 cggatcacaaatgtatagaaatccctttaattctcccatgctaataggcctacaacaaaaaacattatgatttccaaacacatgtggaggagaaggaaat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  9443290 cggatcacaaatgtatagaaatccctttaattctcccatgctaataggcctactacaataaacattatgatttccaaacacatgtggaggagaaggaaat 9443389  T
Q  219 gactgcaacctctcattttcaaagcagaaaaccaatattgacctttgct 267  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9443390 gactgcaacctctcactttcaaagcagaaaaccaatattgacctttgct 9443438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 22 - 267
Target Start/End: Complemental strand, 48361869 - 48361618
Alignment:
Q  22 aaggattgaacgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcgg 121  Q
    |||||||||||| ||||| ||||||||||| ||||||| |||||||| |||| ||||||||||||||||||||||||||||||| ||||  ||||||||     
T  48361869 aaggattgaacgcagtattgatgttgtaaaccttagtctatgattcttcaataccatattcattcataacccacattgaaacatcagatgcaaaggtcga 48361770  T
Q  122 atcacaaatgtatagaaatccctttaattctcccatgctaataggcctacaacaaaaaa------cattatgatttccaaacacatgtggaggagaagga 215  Q
     ||||||||||| |||||||||||||||||||||||||||||| ||||   || || ||       ||||||||||||||||||||||||||||||||||    
T  48361769 gtcacaaatgtaaagaaatccctttaattctcccatgctaatatgcctgttaccaagaattccattattatgatttccaaacacatgtggaggagaagga 48361670  T
Q  216 aatgactgcaacctctcattttcaaagcagaaaaccaatattgacctttgct 267  Q
    |||||||||| ||||||| ||||||| ||||||| |||||||||||||||||    
T  48361669 aatgactgcaccctctcactttcaaaacagaaaaacaatattgacctttgct 48361618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 26 - 233
Target Start/End: Original strand, 35779921 - 35780119
Alignment:
Q  26 attgaacgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatca 125  Q
    ||||| |||||| || |||||||||| ||||||||| |||||| |||||||||  ||||||||||||||||||| ||||| |   | |||  ||   |||    
T  35779921 attgaccgaagtctcaatgttgtaaaccttagtccacgattcttcaatgccatgctcattcataacccacattgtaacatcaacaaaaaaattcaagtca 35780020  T
Q  126 caaatgtatagaaatccctttaattctcccatgctaataggcctacaacaaaaaacattatgatttccaaacacatgtggaggagaaggaaatgactgca 225  Q
    |||||||| |||||||||||||||||||||||||||||| ||||         |  || |||| |||||||||||||||||||||||||||||| |||||    
T  35780021 caaatgtaaagaaatccctttaattctcccatgctaatacgcct---------attatcatgaattccaaacacatgtggaggagaaggaaatggctgca 35780111  T

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Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 111
Target Start/End: Complemental strand, 26324287 - 26324198
Alignment:
Q  22 aaggattgaacgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagata 111  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  26324287 aaggattgaacgaagcatcgatgttgtaaatcttagtccatgattctccagtgccatattcattcataacccacattgaaacatcagata 26324198  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 241
Target Start/End: Original strand, 5130959 - 5131081
Alignment:
Q  122 atcacaaatgtatagaaatccctttaattctcccatgctaataggcc---tacaacaaaaaacattatgatttccaaacacatgtggaggagaaggaaat 218  Q
    |||| ||||||| |||||||||||||||||||||||||  ||| ||    | | | ||||| ||||||||||| ||||||| |||||||||||||| |||    
T  5130959 atcagaaatgtaaagaaatccctttaattctcccatgccgatatgctcggtgccataaaaatcattatgattttcaaacacgtgtggaggagaagggaat 5131058  T
Q  219 gactgcaacctctcattttcaaa 241  Q
    || ||||| |||||| |||||||    
T  5131059 gattgcaatctctcactttcaaa 5131081  T

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Target: chr6 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 34 - 164
Target Start/End: Original strand, 16716447 - 16716577
Alignment:
Q  34 aagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatgta 133  Q
    ||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||     |  ||| | |  ||| |||||||    
T  16716447 aagtatcaatgtggtaaaccttagtccatgattctccaatgccatattcattcataacccacattgtaacatattcgaagaagtttgagtcagaaatgta 16716546  T
Q  134 tagaaatccctttaattctcccatgctaata 164  Q
    |||||||||||||||||||||||||||||||    
T  16716547 tagaaatccctttaattctcccatgctaata 16716577  T

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Target: scaffold0627 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 21 - 164
Target Start/End: Original strand, 4735 - 4878
Alignment:
Q  21 aaaggattgaacgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcg 120  Q
    ||||||||| || ||||||  |||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||    ||   || | |    
T  4735 aaaggattgtacaaagtattaatgtggtaaaccttagtccatgattcaccaatgccatattcattcataacccacattgtaacatattttaaggagtttg 4834  T
Q  121 gatcacaaatgtatagaaatccctttaattctcccatgctaata 164  Q
      ||||||||||| ||||||||||||||||||||||||||||||    
T  4835 agtcacaaatgtaaagaaatccctttaattctcccatgctaata 4878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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