View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17148_low_26 (Length: 241)
Name: NF17148_low_26
Description: NF17148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17148_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 48 - 223
Target Start/End: Original strand, 5764798 - 5764978
Alignment:
| Q |
48 |
gcattttatcaattaacattgttactacaagtaaag-----tgacaaaattatcttcaggtacgatttgacttttataggttttgttagcagatttagat |
142 |
Q |
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| T |
5764798 |
gcattttatcaattaacattgttactacaagtaaagaggtttgacaaaattatcttcaggtacgatttgacttttataggttttgttagcagatttagat |
5764897 |
T |
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| Q |
143 |
taattttatttgtcaatgttgctaatgtattgatggtatgctgatactactttagacacattataaagcttctctgattca |
223 |
Q |
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| T |
5764898 |
taattttatttgtcaatgttgctaatgtattgatggtatgctgatactactttagacacattataaagcttctctgattca |
5764978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 109 - 209
Target Start/End: Original strand, 5770410 - 5770507
Alignment:
| Q |
109 |
ttgacttttataggttttgttagcagatttagattaattttatttgtcaatgttgctaatgtattgatggtatgctgatactactttagacacattataa |
208 |
Q |
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| T |
5770410 |
ttgacttttgtaggttttgtttgcaaattgacattaattttatcagtcaatgttgctattgtattgatggtatgctga---tactttaggcacattataa |
5770506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 87 - 216
Target Start/End: Complemental strand, 42600460 - 42600331
Alignment:
| Q |
87 |
caaaattatcttcaggtacgatttgacttttataggttttgttagcagatttagattaattttatttgtcaatgttgctaatgtattgatggtatgctga |
186 |
Q |
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| T |
42600460 |
caaaattatcttaaggtatggttaaattcttataggttttggtagtagatttactttaattttatttgtcaatattgttaatgtattgacgatatgctta |
42600361 |
T |
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| Q |
187 |
tactactttagacacattataaagcttctc |
216 |
Q |
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| T |
42600360 |
tattattttagacacattataaagcatctc |
42600331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 123 - 216
Target Start/End: Original strand, 35338557 - 35338650
Alignment:
| Q |
123 |
ttttgttagcagatttagattaattttatttgtcaatgttgctaatgtattgatggtatgctgatactactttagacacattataaagcttctc |
216 |
Q |
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| T |
35338557 |
ttttgtttgtagatttaaattaattttatttgtcaatattgttaatgtattgacgatatgcttatattattttagacacatgataaagcatctc |
35338650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 216
Target Start/End: Complemental strand, 19512657 - 19512546
Alignment:
| Q |
108 |
tttgacttttataggttttgttagcagatttagattaattttatttgtcaatgttgctaatg---tattgatggtatgctgatactactttagacacatt |
204 |
Q |
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| T |
19512657 |
tttgatttttattggttttgtgagtagatttatattaattttatttgccaataatgttaatgtattattgacgatatgcttatattattttagacacatg |
19512558 |
T |
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| Q |
205 |
ataaagcttctc |
216 |
Q |
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| T |
19512557 |
ataaagcatctc |
19512546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 216
Target Start/End: Original strand, 18367987 - 18368093
Alignment:
| Q |
114 |
ttttataggttttgtt-agcagatttagattaattttatttgtcaatgttgctaatg---tattgatggtatgctgatactactttagacacattataaa |
209 |
Q |
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| T |
18367987 |
ttttattggttttgttgagtagatttatattaattttatttgccaataatgttaatgtattattgacgatatgcttatattattttagacacatgataaa |
18368086 |
T |
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| Q |
210 |
gcttctc |
216 |
Q |
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|| |||| |
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| T |
18368087 |
gcatctc |
18368093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 216
Target Start/End: Complemental strand, 36594936 - 36594830
Alignment:
| Q |
114 |
ttttataggttttgtt-agcagatttagattaattttatttgtcaatgttgctaatg---tattgatggtatgctgatactactttagacacattataaa |
209 |
Q |
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|||||| ||||||||| || ||||||| |||||||||||||| |||| || ||||| |||||| | |||||| ||| || ||||||||||| ||||| |
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| T |
36594936 |
ttttattggttttgttgagtagatttatattaattttatttgccaataatgttaatgtattattgacgatatgcttatattattttagacacatgataaa |
36594837 |
T |
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| Q |
210 |
gcttctc |
216 |
Q |
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|| |||| |
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| T |
36594836 |
gcatctc |
36594830 |
T |
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