View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17148_low_29 (Length: 220)
Name: NF17148_low_29
Description: NF17148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17148_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 25899816 - 25899996
Alignment:
| Q |
20 |
aggcatcaatgtgggtgaagttttcaattatatactagaagtaatcaagcagggctcttcacggaggtatcttgttgactctttcctgtcttgcannnnn |
119 |
Q |
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||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25899816 |
aggcatcaaggtgggtgaagttttcaattatattctagaagtaatcaagcagggctcttcacggaggtatcttgttgactctttcctgtcttgcattttt |
25899915 |
T |
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| Q |
120 |
nnatatatttagaagtgcatgcattctttcctcaatgctatttccttttcttctagaagtaatatttttccatcgtgtatc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25899916 |
ttatatatttagaagtgcatgcattctttcctcaatgctatttccttttcttctagaagtaatatttttccatcgtgtatc |
25899996 |
T |
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