View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17148_low_3 (Length: 589)
Name: NF17148_low_3
Description: NF17148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17148_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 178; Significance: 1e-95; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 309 - 574
Target Start/End: Complemental strand, 53431055 - 53430790
Alignment:
| Q |
309 |
tatctatcaactcataaattcctattttttctaaatgcagcaactcaagttaacaatttgaagggtcccattacaacagagttagggtcgattgccacac |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
53431055 |
tatctatcaactcataaattcctattttttctaaattcagcaactcaagttaacaacttgaaggatcccattacaacagatttagggtcgattgccacac |
53430956 |
T |
|
| Q |
409 |
cttatgactatggagcaggggaaataacaccaaccgaatcattccaaccagggctagtttatgaaaccagcatcattgactacttgaacttcttgtgtta |
508 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||| || |||||| || |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
53430955 |
cttatgactatggagcaggtgaaataacaccaactgaatcataccgaccaggtcttgtttatgaaaccagcaccattgactacttgaacttcttgtgtta |
53430856 |
T |
|
| Q |
509 |
catgggatacaatacaaccacgatcaaggttatctcagaaaccgtccctgatagtttcagctgccc |
574 |
Q |
| |
|
||| ||||| || ||||| || || |||||||| ||| |||| |||||||||| ||||| |||||| |
|
|
| T |
53430855 |
cataggatataacacaacaactattaaggttatttcaaaaactgtccctgataatttcaactgccc |
53430790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 334 - 574
Target Start/End: Complemental strand, 53423068 - 53422827
Alignment:
| Q |
334 |
tttttctaaatgcagcaactcaagttaacaatttgaagggtcccattacaacagagttagggtcgattgccacaccttatgactatggagcaggggaaat |
433 |
Q |
| |
|
|||||| |||||||||||||||| |||||||| |||||| |||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
53423068 |
tttttcaaaatgcagcaactcaaattaacaatatgaaggatcccattacaacggatttagggtcaattgccacaccttatgactatggagcaggggaaat |
53422969 |
T |
|
| Q |
434 |
aacaccaaccgaatcattccaaccagggctagtttatgaaaccagcatcattgactacttgaacttcttgtgttacatgggatacaatacaa-ccacgat |
532 |
Q |
| |
|
||| | | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| | ||||||||||||| |||| || |
|
|
| T |
53422968 |
tacaatatctgaatcattccaaccagggctagtttatgaaaccagcaccattgactacttgaactacttgtgttacctaggatacaatacaacccacaat |
53422869 |
T |
|
| Q |
533 |
caaggttatctcagaaaccgtccctgatagtttcagctgccc |
574 |
Q |
| |
|
|||| ||||||| |||||||||||| ||||||||| ||||| |
|
|
| T |
53422868 |
taaggctatctcaaaaaccgtccctggtagtttcagttgccc |
53422827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 336 - 574
Target Start/End: Complemental strand, 26095415 - 26095177
Alignment:
| Q |
336 |
tttctaaatgcagcaactcaagttaacaatttgaagggtcccattacaacagagttagggtcgattgccacaccttatgactatggagcaggggaaataa |
435 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||| |||| |||| |
|
|
| T |
26095415 |
tttctaaatgcagcaactcaaattaacaatatgaagggtcccattgcaacagatttagggttaattgccacaccttatgactatggagctggggggataa |
26095316 |
T |
|
| Q |
436 |
caccaaccgaatcattccaaccagggctagtttatgaaaccagcatcattgactacttgaacttcttgtgttacatgggatacaatacaaccacgatcaa |
535 |
Q |
| |
|
|| |||| ||| || ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| || ||||| || |||||||| || || |
|
|
| T |
26095315 |
caacaactgaaccactccaaccagggctcgtttatgaaaccagcaccattgactacttgaacttcttgtgttatataggatataacacaaccaccattaa |
26095216 |
T |
|
| Q |
536 |
ggttatctcagaaaccgtccctgatagtttcagctgccc |
574 |
Q |
| |
|
|||||| ||| |||| |||||||||||||||| |||||| |
|
|
| T |
26095215 |
ggttatttcaaaaactgtccctgatagtttcaactgccc |
26095177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 333 - 575
Target Start/End: Original strand, 48374785 - 48375027
Alignment:
| Q |
333 |
ttttttctaaatgcagcaactcaagttaacaatttgaagggtcccattacaacagagttagggtcgattgccacaccttatgactatggagcaggggaaa |
432 |
Q |
| |
|
||||||| | |||||||||| ||| |||| ||| |||||| ||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
48374785 |
ttttttcgatatgcagcaacacaaattaataatatgaaggctcccattactacagatttagggtcagttgccacaccttatgactatggagcaggggaca |
48374884 |
T |
|
| Q |
433 |
taacaccaaccgaatcattccaaccagggctagtttatgaaaccagcatcattgactacttgaacttcttgtgttacatgggatacaatacaaccacgat |
532 |
Q |
| |
|
||||| ||| ||||||||||||||||| || ||||||||||| |||| ||||||||||||||| | |||||||||||| |||||||| |||||||| || |
|
|
| T |
48374885 |
taacaacaattgaatcattccaaccaggtctcgtttatgaaactagcaccattgactacttgaattacttgtgttacataggatacaacacaaccactat |
48374984 |
T |
|
| Q |
533 |
caaggttatctcagaaaccgtccctgatagtttcagctgcccc |
575 |
Q |
| |
|
|||||||| ||| |||| |||||||||| ||||| ||||||| |
|
|
| T |
48374985 |
taaggttatttcaaaaactgtccctgatactttcaactgcccc |
48375027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 334 - 575
Target Start/End: Complemental strand, 53307870 - 53307629
Alignment:
| Q |
334 |
tttttctaaatgcagcaactcaagttaacaatttgaagggtcccattacaacagagttagggtcgattgccacaccttatgactatggagcaggggaaat |
433 |
Q |
| |
|
||||| ||||||||||| ||||| |||||||| |||||| ||||||||| || | || ||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
53307870 |
tttttataaatgcagcagctcaaattaacaatatgaaggctcccattaccacgaatttggggtcaattgccacaccttatgactatggagcaggagaaat |
53307771 |
T |
|
| Q |
434 |
aacaccaaccgaatcattccaaccagggctagtttatgaaaccagcatcattgactacttgaacttcttgtgttacatgggatacaatacaaccacgatc |
533 |
Q |
| |
|
|||| |||| ||| |||||||||| ||||||||||||||||| |||| |||||||||| | |||| |||||||||||| |||| |||||||||||| | |
|
|
| T |
53307770 |
aacaacaactgaaccattccaacccgggctagtttatgaaactagcaccattgactacctaaactacttgtgttacataggattgaatacaaccacggtg |
53307671 |
T |
|
| Q |
534 |
aaggttatctcagaaaccgtccctgatagtttcagctgcccc |
575 |
Q |
| |
|
||| ||||||| |||||| |||||||||||||| ||||||| |
|
|
| T |
53307670 |
aagattatctctaaaaccgcccctgatagtttcaactgcccc |
53307629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 96
Target Start/End: Complemental strand, 42160081 - 42160009
Alignment:
| Q |
24 |
actacaccttggagcttcaataaaatcacagtgtaactgcaattttgtcaaaattattgtgattccaaacata |
96 |
Q |
| |
|
|||||||| ||||||||| | |||||||||||| ||| ||||||||||| ||| ||| |||||||||||| |
|
|
| T |
42160081 |
actacaccatggagcttccacaaaatcacagtgccactatgattttgtcaaacttactgtaattccaaacata |
42160009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University