View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17148_low_4 (Length: 497)
Name: NF17148_low_4
Description: NF17148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17148_low_4 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-125; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 34789154 - 34788900
Alignment:
| Q |
1 |
gcacagaaacatatatcttacattcaagtcatgcactatccactattctatctatcaaactgttgatacagtggtcaacagaccttaataacatgcaatt |
100 |
Q |
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| T |
34789154 |
gcacagaaacatatatcttacattcaagtcatgcactatccactattctatctatcaaactgttgatacagtggtcaacagaccttaataacatgcaatt |
34789055 |
T |
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| Q |
101 |
tctttagaaaattaattactaatatgtgtggaacgaagctctacagagacggcaactcggatgagcgctaagccacatatcaagcactcagaatgataaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34789054 |
tctttagaaaattaattactaatatgtgtggaacgaagctctacagagacggcaactcggatgagcgctaagccacatatcaagcactcagaatgataaa |
34788955 |
T |
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| Q |
201 |
cattttgacgttctgttaacaccttcaccttttcatcatcttggaaaatactcaaacatatgcagt |
266 |
Q |
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| T |
34788954 |
cattttgacgttctgttaacac-----------catcatcttggaaaatactcaaacatatgcagt |
34788900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 98 - 332
Target Start/End: Original strand, 2289977 - 2290216
Alignment:
| Q |
98 |
atttctttagaaaattaattactaatatgtgtggaacgaagctctacagagacggcaactcggatga---gcgctaagccacatatcaagcactcagaat |
194 |
Q |
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| T |
2289977 |
atttctttagaaaatttattactaacatgtgtggagcgaagttcaacagagagggcaactaggatgatgagcactaagccacatatcaagcactcagaat |
2290076 |
T |
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| Q |
195 |
gataaacattttgacgttctgttaacaccttcaccttttcatcatcttggaaaatactcaaacatatgcagtattc---cttattctcaaaaccagtacc |
291 |
Q |
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| T |
2290077 |
gataaacatgctgacattctgttaacaccttcaccatttcattatctcggaaaatactcaaacatatgcagtattccttcttagtctcaaaaccagtacc |
2290176 |
T |
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| Q |
292 |
atcaaaaaacataatgtttcaaatcaatcccaatgctccca |
332 |
Q |
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| T |
2290177 |
atc-aaaaccataaagtttcaaatcaatcccaatgctccca |
2290216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 132
Target Start/End: Original strand, 2289873 - 2289952
Alignment:
| Q |
53 |
tatcaaactgttgatacagtggtcaacagaccttaataacatgc-aatttctttagaaaattaattactaatatgtgtgga |
132 |
Q |
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| T |
2289873 |
tatcaaactgttgataga-tggtcaacaaaacttgataatatgttaatttctttagaaaattaattactaacatgtgtgga |
2289952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 2289812 - 2289849
Alignment:
| Q |
31 |
atgcactatccactattctatctatcaaactgttgata |
68 |
Q |
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| T |
2289812 |
atgcactatccactattctatccatcaaactgttgata |
2289849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 100 - 259
Target Start/End: Complemental strand, 1495 - 1334
Alignment:
| Q |
100 |
ttctttagaaaattaattactaatatgtgtggaacgaagctctacagagacggc-aactcggatgagcgctaagccacatat-caagcactcagaatgat |
197 |
Q |
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|||||||||||||| |||||||| | || | || ||||||||| | || ||| |||| |||||||| ||||||||||||| |||| || | |||||| |
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| T |
1495 |
ttctttagaaaattgattactaacaggtatagagggaagctctagaaagtgggcaaactaggatgagcactaagccacatatgcaagtacccgtaatgat |
1396 |
T |
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| Q |
198 |
aaacattttgacgttctgttaacaccttcaccttttcatcatcttggaaaatactcaaacat |
259 |
Q |
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| T |
1395 |
aaatatgttgacattctgttaacaaccacaccttttcatcatcttgaaaaatactcaaacat |
1334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 8e-19; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 142 - 273
Target Start/End: Original strand, 7317456 - 7317588
Alignment:
| Q |
142 |
tacagagacggcaactcggatgagcgctaagccacatatc-aagcactcagaatgataaacattttgacgttctgttaacaccttcaccttttcatcatc |
240 |
Q |
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||||||| ||||||| ||||||| ||||| ||| |||| ||||||| | |||||||||||| |||| ||||||||||| | |||||| ||||||||| |
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| T |
7317456 |
tacagagcgggcaactaggatgagtactaagtcacctatccaagcactgataatgataaacatgttgatattctgttaacaacctcacctattcatcatc |
7317555 |
T |
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| Q |
241 |
ttggaaaatactcaaacatatgcagtattcctt |
273 |
Q |
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| T |
7317556 |
ttgaaaagtactcaaacatatgcaacattcctt |
7317588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 135 - 256
Target Start/End: Complemental strand, 2632844 - 2632722
Alignment:
| Q |
135 |
gaagctctacagagacggcaactcggatgagcgctaagccacatatc-aagcactcagaatgataaacattttgacgttctgttaacaccttcacctttt |
233 |
Q |
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|||||||||||||| | ||||| | |||||| |||||||||||| | |||||||| || ||||||||| || | ||||||||||| | ||||||||| |
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| T |
2632844 |
gaagctctacagagcagtcaactagaatgagcactaagccacatacccaagcactcgcaaggataaacatgtttccattctgttaacaacctcacctttt |
2632745 |
T |
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| Q |
234 |
catcatcttggaaaatactcaaa |
256 |
Q |
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||| ||||||||||||||||||| |
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| T |
2632744 |
cattatcttggaaaatactcaaa |
2632722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 287
Target Start/End: Complemental strand, 2494856 - 2494791
Alignment:
| Q |
225 |
tcaccttttcatcatcttggaaaatactcaaacatatgcagtattcctt---attctcaaaaccag |
287 |
Q |
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|||||||| | |||||||| |||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
2494856 |
tcacctttccttcatcttgaaaaatactcaaacatatgcaacattccttctaattctcaaaaccag |
2494791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 179
Target Start/End: Original strand, 9564734 - 9564816
Alignment:
| Q |
97 |
aatttctttagaaaattaattactaatatgtgtggaacgaagctctacagagacggcaactcggatgagcgctaagccacata |
179 |
Q |
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||||||||||||||||| || ||||| |||| |||| ||||||||| |||| | ||||| |||||| | |||||||||||| |
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| T |
9564734 |
aatttctttagaaaatttatgactaacatgtatggagggaagctctatagagcagtcaactaggatgaacactaagccacata |
9564816 |
T |
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