View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17148_low_6 (Length: 450)
Name: NF17148_low_6
Description: NF17148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17148_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Original strand, 20141184 - 20141611
Alignment:
| Q |
1 |
actcattagttttgttttaatataaaagtgtagctaattaaacttgttatcaacatagatacataagttttgtccaagnnnnnnnttagatatatgaatg |
100 |
Q |
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| T |
20141184 |
actcattagttttgttttaatataaaagtgtaattaattaaacttgttatcaacatagatacataagttttgtccaacaaaaaaattagatat--gaatg |
20141281 |
T |
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| Q |
101 |
aacaaccttgaaagtaagctatatatagaacatcttaaagcttataatcttgactatagtcacgataagttatcttatttaggttgaggatttaggcttt |
200 |
Q |
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| T |
20141282 |
aacaaccttgaaagtaagctatatatagaacctcttaaagcttataatcttgactatagtcacgataagttatcttatttaggttgaggatttaggcttt |
20141381 |
T |
|
| Q |
201 |
taataattatccacgagcaagttaatagaacctaaagaataaagagattagaaggagacaagagattaataagttttgtcnnnnnnnnnnnngagattaa |
300 |
Q |
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| T |
20141382 |
taataattatccacgagtaagttaatagaacctaaagaataaagagattagaaggagacaagagattaataagtttagtcaaaaaataaaaagagattaa |
20141481 |
T |
|
| Q |
301 |
ttaataagcaatgg-aacacctgaaacttgcattactttgaaatctgcaatggaagtggaataatataatcatggatctgatgataatttatggttcact |
399 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20141482 |
ttaataagcaatggaaacacctgaaacttgcattactttgaaatcttcaatggaagtggaataatataatcatggatctgatgataatttatggttcact |
20141581 |
T |
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| Q |
400 |
ttgttaattcatgatgatggttgttgctaa |
429 |
Q |
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| T |
20141582 |
ttgttaattcatgatgatggttgttgctaa |
20141611 |
T |
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