View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17148_low_8 (Length: 402)

Name: NF17148_low_8
Description: NF17148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17148_low_8
NF17148_low_8
[»] chr3 (2 HSPs)
chr3 (1-199)||(53495277-53495475)
chr3 (198-389)||(53495611-53495801)
[»] chr5 (11 HSPs)
chr5 (1-199)||(39863446-39863646)
chr5 (1-199)||(39737649-39737849)
chr5 (220-394)||(39863070-39863253)
chr5 (6-195)||(39856251-39856442)
chr5 (220-308)||(39855966-39856054)
chr5 (204-304)||(39738005-39738105)
chr5 (1-146)||(38980495-38980642)
chr5 (220-308)||(38980891-38980979)
chr5 (260-308)||(39909986-39910034)
chr5 (221-308)||(39846248-39846335)
chr5 (16-146)||(39846582-39846714)
[»] chr4 (1 HSPs)
chr4 (3-76)||(32826851-32826927)


Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 53495277 - 53495475
Alignment:
Q  1 caaaactggatcccaacctccctaagcaacttcttcaggaattgagggatatcacctttaaagacttggttgaaaagaattaaagaaggtctcactccaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  53495277 caaaactggatcccaacctccctaagcaacttcttcaggaattgagggatatcacctttaaagacttggttgaaaaaaattaaagaaggtctcactccaa 53495376  T
Q  101 aagttaacttcaatgcaatcaaggtaaaaattgacgctaatgctgatgcgttctcctctcagcaattagaacaaattgttgttgttgttaaccttctca 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  53495377 aagttaacttcaatgcaatcaaggtaaaaattgacgctaatgctgatgcgttctcctctcagcaattagaacaaattggtgttgttgttaaccttctca 53495475  T

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Target: chr3; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 198 - 389
Target Start/End: Original strand, 53495611 - 53495801
Alignment:
Q  198 cagcttaactttcttgatgatcagcttgaaaaactacaaggtgaaagggccaaactggctgtgattcaagatcaagaaaaagataagatcacatctttga 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53495611 cagcttaactttcttgatgatcagcttgaaaaactacaaggtgaaagggccaaactggctgtgattcaagatcaagaaaaagataagatcacatctttga 53495710  T
Q  298 acaaagaagttttccatcgtcttgttgatgatcaaatcaagttagaaagtgttgaatacagaatctctgaggccgaaactaaattggaaagt 389  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  53495711 acaaagaagttttccatcgtcttgttgatgatcaaatcaagtt-gaaagtgttgaatacaaaatctctgaggccgaaactaaattggaaagt 53495801  T

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Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 39863646 - 39863446
Alignment:
Q  1 caaaactggatcccaacctccctaagcaacttcttcaggaattgagggatatcacctttaaaga---cttggttgaaaagaattaaagaaggtctcactc 97  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||   |||||||||||| | | ||||||||| || |||    
T  39863646 caaaactggatcccagcctccctaagcaacttcttcaggaattgagggatattgcctttaaagaagacttggttgaaaa-attaaaagaaggtatctctc 39863548  T
Q  98 caaaagttaacttcaatgcaatcaaggtaaaaattgacgctaatgctgatgcgttctcctctcagcaattagaacaaattgttgttgttgttaaccttct 197  Q
    | ||||||||||||||| || |||||| ||||||||| ||||||||||| || ||| | ||||  |||||||||||| ||| ||||||||||||||||||    
T  39863547 ctaaagttaacttcaatacagtcaaggaaaaaattgatgctaatgctgacgctttcacgtctcgtcaattagaacaagttggtgttgttgttaaccttct 39863448  T
Q  198 ca 199  Q
    ||    
T  39863447 ca 39863446  T

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Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 39737649 - 39737849
Alignment:
Q  1 caaaactggatcccaacctccctaagcaacttcttcaggaattgagggatatcacctttaaag---acttggttgaaaagaattaaagaaggtctcactc 97  Q
    |||||| ||||||||| |||||| ||||||||||||||||||| ||||||||  | |||||||   ||||||||||||| | |||||||||||||||||     
T  39737649 caaaacgggatcccaatctccctgagcaacttcttcaggaattaagggatattgcttttaaaggagacttggttgaaaa-acttaaagaaggtctcactt 39737747  T
Q  98 caaaagttaacttcaatgcaatcaaggtaaaaattgacgctaatgctgatgcgttctcctctcagcaattagaacaaattgttgttgttgttaaccttct 197  Q
    | |||||||| ||||| ||| |||||| |||||||||||||||||||||||| || |||||||  |||||||||||| | | || |||||||||||||||    
T  39737748 ctaaagttaatttcaacgcagtcaaggaaaaaattgacgctaatgctgatgcattttcctctctccaattagaacaagtcggtgctgttgttaaccttct 39737847  T
Q  198 ca 199  Q
    ||    
T  39737848 ca 39737849  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 220 - 394
Target Start/End: Complemental strand, 39863253 - 39863070
Alignment:
Q  220 agcttgaaaaactacaaggtgaaagggccaaactggctgtgattcaagatcaagaaaaagataagatcacatctttgaacaaagaag---------tttt 310  Q
    |||||||||||||||||||||| || |||||| | | || |||| |||||||||| |||||||||||||||||||| ||||||||||         ||||    
T  39863253 agcttgaaaaactacaaggtgacagagccaaaattgatgagattgaagatcaagagaaagataagatcacatcttttaacaaagaagttaaatcaatttt 39863154  T
Q  311 ccatcgtcttgttgatgatcaaatcaagttagaaagtgttgaatacagaatctctgaggccgaaactaaattggaaagtgatga 394  Q
    |||||| |||| | ||||||||||||| ||  ||||||||||| | | |||| | |||||  ||||| ||||||||||| ||||    
T  39863153 ccatcgccttgctaatgatcaaatcaaattgaaaagtgttgaagataaaatcccggaggcgcaaactgaattggaaagtcatga 39863070  T

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Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 6 - 195
Target Start/End: Complemental strand, 39856442 - 39856251
Alignment:
Q  6 ctggatcccaacctccctaagcaacttcttcaggaattgagggatatcacctttaaaga---cttggttgaaaagaattaaagaaggtctcactccaaaa 102  Q
    |||||||||||| |||   |||||||||||  |||||||||||||||| | ||||||||   |||||||||||| | ||||| ||||||||||||| |||    
T  39856442 ctggatcccaacttccaagagcaacttcttatggaattgagggatatcgcttttaaagaagacttggttgaaaa-atttaaacaaggtctcactcctaaa 39856344  T
Q  103 gttaacttcaatgcaatcaaggtaaaaattgacgctaatgctgatgcgttctcctctcagcaattagaacaaattgttgttgttgttaacctt 195  Q
    ||||  |||||  || ||| || ||||||||| ||||||| |||   |||||| ||||| ||| |||||||| | | ||||||||||||||||    
T  39856343 gttagtttcaacacagtcatggaaaaaattgaagctaatgttgacatgttctcttctcaccaactagaacaagtcggtgttgttgttaacctt 39856251  T

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Target: chr5; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 220 - 308
Target Start/End: Complemental strand, 39856054 - 39855966
Alignment:
Q  220 agcttgaaaaactacaaggtgaaagggccaaactggctgtgattcaagatcaagaaaaagataagatcacatctttgaacaaagaagtt 308  Q
    ||||||||||||||||||| ||  |||| ||| |||||| ||||||||||||||| |||||||||||||||||||| ||||| ||||||    
T  39856054 agcttgaaaaactacaaggcgaccgggctaaaatggctgagattcaagatcaagagaaagataagatcacatcttttaacaatgaagtt 39855966  T

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Target: chr5; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 204 - 304
Target Start/End: Original strand, 39738005 - 39738105
Alignment:
Q  204 aactttcttgatgatcagcttgaaaaactacaaggtgaaagggccaaactggctgtgattcaagatcaagaaaaagataagatcacatctttgaacaaag 303  Q
    |||| |||||||| |||| ||| |||||||||||  || ||||||||| | |||| ||||||||||||||| ||||||||||| ||||||||||| ||||    
T  39738005 aactctcttgatgctcagattgcaaaactacaagaagacagggccaaaattgctgagattcaagatcaagagaaagataagattacatctttgaataaag 39738104  T
Q  304 a 304  Q
    |    
T  39738105 a 39738105  T

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Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 38980495 - 38980642
Alignment:
Q  1 caaaactggatcccaacctccctaagcaacttcttcaggaattgagggatatcacctttaa---agacttggttgaaaagaatta-aagaaggtctcact 96  Q
    |||||||| |||||||||||||| || ||||||||||||||||| |||||||   |||| |   ||||||||||||||  |||||   |||||||||  |    
T  38980495 caaaactgtatcccaacctccctgagaaacttcttcaggaattgtgggatattgtctttgaatgagacttggttgaaa--aattatttgaaggtctcttt 38980592  T
Q  97 ccaaaagttaacttcaatgcaatcaaggtaaaaattgacgctaatgctga 146  Q
     | ||||  |||||||||||| |||||| |||| ||||||||||||||||    
T  38980593 actaaagacaacttcaatgcagtcaaggaaaaatttgacgctaatgctga 38980642  T

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Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 220 - 308
Target Start/End: Original strand, 38980891 - 38980979
Alignment:
Q  220 agcttgaaaaactacaaggtgaaagggccaaactggctgtgattcaagatcaagaaaaagataagatcacatctttgaacaaagaagtt 308  Q
    |||||||||||||||||| ||| ||||||||| |  ||| |  ||||||| |||| |||||||||||| ||||||| ||||||||||||    
T  38980891 agcttgaaaaactacaagttgagagggccaaagttactgagggtcaagataaagagaaagataagatcgcatctttaaacaaagaagtt 38980979  T

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Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 260 - 308
Target Start/End: Complemental strand, 39910034 - 39909986
Alignment:
Q  260 gattcaagatcaagaaaaagataagatcacatctttgaacaaagaagtt 308  Q
    ||||||||||||||| ||||||| |||| ||||||||||||||||||||    
T  39910034 gattcaagatcaagagaaagataggatcgcatctttgaacaaagaagtt 39909986  T

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Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 221 - 308
Target Start/End: Complemental strand, 39846335 - 39846248
Alignment:
Q  221 gcttgaaaaactacaaggtgaaagggccaaactggctgtgattcaagatcaagaaaaagataagatcacatctttgaacaaagaagtt 308  Q
    |||||||||||||||||| ||||| |||||| | | || |||| ||| |||||| |||| ||||||||| ||| | ||||||||||||    
T  39846335 gcttgaaaaactacaaggggaaagagccaaaattgttgagattgaagctcaagagaaagctaagatcacgtctcttaacaaagaagtt 39846248  T

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Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 39846714 - 39846582
Alignment:
Q  16 acctccctaagcaacttcttcaggaattgagggatatcaccttt---aaagacttggttgaaaagaattaaagaaggtctcactccaaaagttaacttca 112  Q
    |||||||| | ||||||||||||||||||||||||||| |||||   ||||||||||||| ||| | |||||  ||||||  |||   |||| |||||||    
T  39846714 acctccctgatcaacttcttcaggaattgagggatatcgcctttaaaaaagacttggttgtaaa-atttaaactaggtcttgctcgtgaagtaaacttca 39846616  T
Q  113 atgcaatcaaggtaaaaattgacgctaatgctga 146  Q
    ||| | ||||||  ||||| || |||||||||||    
T  39846615 atgtagtcaaggataaaatcgaagctaatgctga 39846582  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 32826927 - 32826851
Alignment:
Q  3 aaactggatcccaacctccctaagcaacttcttcaggaattgagggatatcacctttaaa---gacttggttgaaaa 76  Q
    ||||| ||||||||||||  | |||||||| |||||||||||||||||||| ||||||||   ||||||||||||||    
T  32826927 aaactagatcccaacctctttgagcaactttttcaggaattgagggatatcgcctttaaagaggacttggttgaaaa 32826851  T

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