View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17148_low_9 (Length: 393)
Name: NF17148_low_9
Description: NF17148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17148_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 145; Significance: 3e-76; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 211 - 374
Target Start/End: Complemental strand, 10320512 - 10320348
Alignment:
| Q |
211 |
tcaaatgttgaatcaaattaattaagagtgaacgaaaccatgaaatt-aatttacagtaatgtaaaaacactatacatcatttcagaatacttttgaact |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
10320512 |
tcaaatgttgaatcaaattaattaagagtgaacgaaaccatgaaatttaatttacagtaatgtaaaaacactatgcaacatttcagaatacttttgaact |
10320413 |
T |
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| Q |
310 |
ttcatttccaaaacaaagcagaaccatacaagtttgtttgctacatatcagacataatcctttgt |
374 |
Q |
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| T |
10320412 |
ttcatttccaaaacaaagcagaaccatacaagtttttttgctacatatcagacataatcctttgt |
10320348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 211 - 374
Target Start/End: Complemental strand, 10337628 - 10337464
Alignment:
| Q |
211 |
tcaaatgttgaatcaaattaattaagagtgaacgaaaccatgaaatt-aatttacagtaatgtaaaaacactatacatcatttcagaatacttttgaact |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
10337628 |
tcaaatgttgaatcaaattaattaagagtgaacgaaaccatgaaatttaatttagagtaatgtaaaaacactatgcaacatttcagaatacttttgaact |
10337529 |
T |
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| Q |
310 |
ttcatttccaaaacaaagcagaaccatacaagtttgtttgctacatatcagacataatcctttgt |
374 |
Q |
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| T |
10337528 |
ttcatttccaaaacaaagcagaaccatacaagtttttttgctacatatcagacataatcctttgt |
10337464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 211 - 374
Target Start/End: Complemental strand, 10300080 - 10299916
Alignment:
| Q |
211 |
tcaaatgttgaatcaaattaattaagagtgaacgaaaccatgaaatt-aatttacagtaatgtaaaaacactatacatcatttcagaatacttttgaact |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
10300080 |
tcaaatgttgaatcaaattaattaagagtgaacgaaaccatgaaatttaatttagagtaatgtaaaaacactatgcaacatttcagaatacttttgaact |
10299981 |
T |
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| Q |
310 |
ttcatttccaaaacaaagcagaaccatacaagtttgtttgctacatatcagacataatcctttgt |
374 |
Q |
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|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
10299980 |
ttcatttccaaaacaaagcagaaccatacaagcttttttgctacatatcagacataatcctttgt |
10299916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 21 - 152
Target Start/End: Complemental strand, 10300214 - 10300083
Alignment:
| Q |
21 |
aatcatagtttatgctgtaaatatttatacatgaatttgagaaaagaggaatgctagctagaacaaattcttgttaaaaaagctagcaacaaactcttct |
120 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
10300214 |
aatcatagtctatgctgtaaatatttatacatgaatttgagaaaagaggaatgctagctagaacaaattcttgttaaaaaagctagcaacaatctcttct |
10300115 |
T |
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| Q |
121 |
tgctatttaagaatattcttattaccatgtag |
152 |
Q |
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| T |
10300114 |
tgctatttaagaatatccttattaccatgtag |
10300083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 21 - 152
Target Start/End: Complemental strand, 10337762 - 10337631
Alignment:
| Q |
21 |
aatcatagtttatgctgtaaatatttatacatgaatttgagaaaagaggaatgctagctagaacaaattcttgttaaaaaagctagcaacaaactcttct |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10337762 |
aatcatagtttatgctgtaaatatttatacatgaatttgagaaagaaggaatgctagctagaacaaattcttgttaaaaaagctagcaacaaactcttct |
10337663 |
T |
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| Q |
121 |
tgctatttaagaatattcttattaccatgtag |
152 |
Q |
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| T |
10337662 |
tgctatttaagaatatccttattaccatgtag |
10337631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 21 - 152
Target Start/End: Complemental strand, 10320650 - 10320515
Alignment:
| Q |
21 |
aatcatagtttatgctgtaaatat----ttatacatgaatttgagaaaagaggaatgctagctagaacaaattcttgttaaaaaagctagcaacaaactc |
116 |
Q |
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||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
10320650 |
aatcatagtttatgctgtatatatatatttatacatgaatttgagaaaagaggaatgctaggtagaacaaattcttgttaaaaaagctagcaacaaactc |
10320551 |
T |
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| Q |
117 |
ttcttgctatttaagaatattcttattaccatgtag |
152 |
Q |
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| T |
10320550 |
ttcttgctatttaagaatatccttattaccatgtag |
10320515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 265 - 335
Target Start/End: Original strand, 35634769 - 35634839
Alignment:
| Q |
265 |
agtaatgtaaaaacactatacatcatttcagaatacttttgaactttcatttccaaaacaaagcagaacca |
335 |
Q |
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|||||| |||||||| |||||| |||||||||||||||||| ||||||||||||||||||| ||| ||||| |
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| T |
35634769 |
agtaatttaaaaacagtatacagcatttcagaatacttttgcactttcatttccaaaacaaggcacaacca |
35634839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 352
Target Start/End: Original strand, 35631897 - 35631982
Alignment:
| Q |
267 |
taatgtaaaaacactatacatcatttcagaatacttttgaactttcatttccaaaacaaagcagaaccatacaagtttgtttgcta |
352 |
Q |
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| T |
35631897 |
taatgtaaaaatagtataaagcatttcaaaatacatttgaacttccatttcacaaacaaggcagaagcacacaattttatttgcta |
35631982 |
T |
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