View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17149_high_10 (Length: 374)
Name: NF17149_high_10
Description: NF17149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17149_high_10 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 17 - 374
Target Start/End: Original strand, 43548009 - 43548366
Alignment:
| Q |
17 |
atttgcgaggatggtgaccccattgacgtcttagttattatgcaggtacctcatattgtacccttcctttgcaaattaacttaccttgtgtgataatttc |
116 |
Q |
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| T |
43548009 |
atttgcgaggatggtgaccccattgacgtcttagttattatgcaggtacctcatattgtacccttcctttgcaaattaacttaccttgtgtgataatttc |
43548108 |
T |
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| Q |
117 |
atatgaagataaaatctgcgctacatatttatgcaatcctgttcttaaatttggaatctgttattagttgttatgcgatttgcctagttcttcatcgaat |
216 |
Q |
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| T |
43548109 |
atatgaagataaaatctgcgctacatatttatgcaatcctgttcttaaatttggaatctgttattagttgttatgcgatttgcctagttcttcatcgaat |
43548208 |
T |
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| Q |
217 |
tccgaaaggaaacctgtatgtactgaaaatatcatcaaagttagatcatctaggatctagcctccttataatgaaacttcatttatcaatattttgaact |
316 |
Q |
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| T |
43548209 |
tccgaaaggaaacctgtatgtactgaaaatatcatcaaagttagatcatctaggatctagcctccttataatgaaacttcatttatcaatattttgaact |
43548308 |
T |
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| Q |
317 |
agagctcttgtacttttctttttccttttcaaaaatggattgtataataatagtcaac |
374 |
Q |
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| T |
43548309 |
agagctcttgtacttttctttttccttttcaaaaatggattgtataataatagtcaac |
43548366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 85 - 180
Target Start/End: Original strand, 50900920 - 50901015
Alignment:
| Q |
85 |
ttgcaaattaacttaccttgtgtgataatttcatatgaagataaaatctgcgctacatatttatgcaatcctgttcttaaatttggaatctgttat |
180 |
Q |
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| T |
50900920 |
ttgcaaataaacttaccttgtgtgataatttcatatgaagatcaaatctgcactacatatttatgcaatcctgttcccaaatttggaatctgttat |
50901015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 29368255 - 29368480
Alignment:
| Q |
17 |
atttgcgaggatggtgaccccattgacgtcttagttattatgcaggtacct-------catattgtacccttcct-ttgcaaattaacttaccttgtgtg |
108 |
Q |
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| T |
29368255 |
atttgtgaggatggtgaccccattgatgtcttagttattatgcaggtatttttgtttacatattgtccacttccccttgcaaattaacttgctttgtgtg |
29368354 |
T |
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| Q |
109 |
ataatttcatatgaagataaaatctgcgctacatatttatgcaatcctgttcttaaatttggaatctgttattagttgttatgcgatttgcctagttctt |
208 |
Q |
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| T |
29368355 |
ataattccataagaagatcaaatgtgcacaacatatttgtgcaattctgttctcaaattaggattctgttattagttgttaaacaatttgcc---ttatt |
29368451 |
T |
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| Q |
209 |
catcgaattccgaaaggaaacctgtatgt |
237 |
Q |
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| T |
29368452 |
cattgaattccaaaaggaaacctgcatgt |
29368480 |
T |
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