View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17149_high_4 (Length: 540)
Name: NF17149_high_4
Description: NF17149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17149_high_4 |
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| [»] scaffold0244 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 19 - 525
Target Start/End: Complemental strand, 40699694 - 40699186
Alignment:
| Q |
19 |
actttcatgcagatttgcaaaatcacgatgcttatgaaagaaacatcacacaagcacctccttttcttgaaaaaacaacacagtgagattttaagtgtcc |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40699694 |
actttcatgcagatttgcaaaatcacgatgcttatgaaagaaacatcacacaagcacctccttttcttgaaaaaacaacacagtgagattttaagtgtcc |
40699595 |
T |
|
| Q |
119 |
caaaattttgaaagtcataataccttgaccaatagcagtagcaatggcaatga---cagtggcaatggattagtatgttatgacgagggcgagggcaaga |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
40699594 |
caaaattttgaaagtcataataccttgaccaatagcagtagcaatggcaatgacgtcagtggcaatggattagtatgttatgacgagggcgaaggcaaga |
40699495 |
T |
|
| Q |
216 |
caatgatgagaggggaggtcatataggtcggaacagaggaggaatagggaaatttgagaaagatggctactttgannnnnnnattaaataaatacttgtt |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||| |
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| T |
40699494 |
caatgatgagaggggaggtcatataggtcggaacagaggaggaatagggaaatttaagaaagatggttactttga-ttttttattaaataaatacttgtt |
40699396 |
T |
|
| Q |
316 |
ttttaattttaaatctaaaccttaggtagagtgcttctccaaatggtcaatactcaactacttatggatataggtggttagatcataatctaactcaaca |
415 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||| |||||||||||||||||| |||||||||||||| |
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| T |
40699395 |
ttttaattttaaatctaaaccttaggtagagtgcttctccaaatggtcaatattcagctagttatgaatataggtggttagatcagaatctaactcaaca |
40699296 |
T |
|
| Q |
416 |
agtagagctagttaattgttggagttggatatggaggcttcaagtttctgaaaatctatgacatttttgttggctggagatgcatgctagcctccctacc |
515 |
Q |
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|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| || ||||||||| ||||||||||||| |
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| T |
40699295 |
agtagagctaattaattgttggagttggacctggaggcttcaagtttctgaaaatctatggcatttttgttggatgaagatgcatgatagcctccctacc |
40699196 |
T |
|
| Q |
516 |
aatgcctttg |
525 |
Q |
| |
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|||||||||| |
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| T |
40699195 |
aatgcctttg |
40699186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 3e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 345 - 524
Target Start/End: Complemental strand, 1260232 - 1260053
Alignment:
| Q |
345 |
agtgcttctccaaatggtcaatactcaactacttatggatataggtggttagatcataatctaactcaacaagtagagctagttaattgttggagttgga |
444 |
Q |
| |
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||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1260232 |
agtgcttctccaaatggtcaatactcagctagttatggatataggtggtttgatcataatctaactcaacaagtagagctagttaattgttggagttgga |
1260133 |
T |
|
| Q |
445 |
tatggaggcttcaagtttctgaaaatctatgacatttttgttggctggagatgcatgctagcctccctaccaatgccttt |
524 |
Q |
| |
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| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
1260132 |
tctggaggcttcaagtttctgaaaatctaagacatttttgttggctggtgatgcatgctagcctccctatcaatgccttt |
1260053 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 5e-42; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 26 - 162
Target Start/End: Complemental strand, 45560273 - 45560136
Alignment:
| Q |
26 |
tgcagatttgcaaaatcacgatgcttatgaaagaaacatcacacaagcacctccttttcttgaaaaaacaacac--agtgagattttaagtgtcccaaaa |
123 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||| ||||||||||||| ||||||||| |
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| T |
45560273 |
tgcagatttgcaaaaccacgatgcttatgaaagaaacatcacacaaacacctcctgttcttga-aaaacaacacaaagtgagattttaaatgtcccaaat |
45560175 |
T |
|
| Q |
124 |
ttttgaaagtcataataccttgaccaatagcagtagcaa |
162 |
Q |
| |
|
||| |||| ||||||||||||||||||||||||||||| |
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| T |
45560174 |
tttcaaaagccataataccttgaccaatagcagtagcaa |
45560136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 54 - 152
Target Start/End: Complemental strand, 3346982 - 3346882
Alignment:
| Q |
54 |
gaaagaaacatcacacaagcacctccttttcttgaa-aaaacaac-acagtgagattttaagtgtcccaaaattttgaaagtcataataccttgaccaat |
151 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||| ||||||| |||||||||||| |||||||||||| ||| |||| |||||||||||||||||| |
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| T |
3346982 |
gaaaaaaacatcacacaaacacctccttttcttgaataaaacaaagacagtgagatttcaagtgtcccaaattttcaaaagccataataccttgaccaat |
3346883 |
T |
|
| Q |
152 |
a |
152 |
Q |
| |
|
| |
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|
| T |
3346882 |
a |
3346882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 298 - 331
Target Start/End: Complemental strand, 45560031 - 45559998
Alignment:
| Q |
298 |
attaaataaatacttgttttttaattttaaatct |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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| T |
45560031 |
attaaataaatacttgttttttaattttaaatct |
45559998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 2e-41; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 402 - 524
Target Start/End: Original strand, 33509090 - 33509212
Alignment:
| Q |
402 |
aatctaactcaacaagtagagctagttaattgttggagttggatatggaggcttcaagtttctgaaaatctatgacatttttgttggctggagatgcatg |
501 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| | |||||||| |||| ||||||||| |||||||||||||||||| |||||||| |
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| T |
33509090 |
aatctaactcaacaagtagagccagttaattgttggagttggatctagaggcttctggtttatgaaaatcttagacatttttgttggctggtgatgcatg |
33509189 |
T |
|
| Q |
502 |
ctagcctccctaccaatgccttt |
524 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
33509190 |
ctagcctccctaccaatgccttt |
33509212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 52 - 158
Target Start/End: Complemental strand, 32351401 - 32351299
Alignment:
| Q |
52 |
atgaaagaaacatcacacaagcacctccttttcttgaaaaaacaacacagtgagattttaagtgtcccaaaattttgaaagtcataataccttgaccaat |
151 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||| || | |||||||| ||||||| |||| ||| |||| |||||||||||||| ||| |
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| T |
32351401 |
atgaaagaaacatcacacaaacac-tccttttcttgaaaaaaaaa---actgagatttcaagtgtctcaaattttcaaaagccataataccttgactaat |
32351306 |
T |
|
| Q |
152 |
agcagta |
158 |
Q |
| |
|
| ||||| |
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|
| T |
32351305 |
aacagta |
32351299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 52 - 158
Target Start/End: Complemental strand, 32368062 - 32367960
Alignment:
| Q |
52 |
atgaaagaaacatcacacaagcacctccttttcttgaaaaaacaacacagtgagattttaagtgtcccaaaattttgaaagtcataataccttgaccaat |
151 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||| || | |||||||| ||||||| |||| ||| |||| |||||||||||||| ||| |
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| T |
32368062 |
atgaaagaaacatcacacaaacac-tccttttcttgaaaaaaaaa---actgagatttcaagtgtctcaaattttcaaaagccataataccttgactaat |
32367967 |
T |
|
| Q |
152 |
agcagta |
158 |
Q |
| |
|
| ||||| |
|
|
| T |
32367966 |
aacagta |
32367960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 152
Target Start/End: Complemental strand, 27923502 - 27923406
Alignment:
| Q |
58 |
gaaacatcacacaagcacctccttttcttgaaaaaac-aacacagtgagattt-taagtgtcccaaaattttgaaagtcataataccttgaccaata |
152 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||| || |||||||| ||| |||||||| ||| ||| |||| ||||||| ||||||||||| |
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|
| T |
27923502 |
gaaacatcacacaaacacctcattttcttgaaaaaacaaagacagtgaggtttcaaagtgtccaaaattttaaaaagccataatatcttgaccaata |
27923406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 298 - 333
Target Start/End: Complemental strand, 27923296 - 27923260
Alignment:
| Q |
298 |
attaaataaatacttgtt-ttttaattttaaatctaa |
333 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |
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|
| T |
27923296 |
attaaataaatacttgtttttttaattttaaatctaa |
27923260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0244 (Bit Score: 76; Significance: 7e-35; HSPs: 2)
Name: scaffold0244
Description:
Target: scaffold0244; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 421 - 524
Target Start/End: Complemental strand, 8909 - 8806
Alignment:
| Q |
421 |
agctagttaattgttggagttggatatggaggcttcaagtttctgaaaatctatgacatttttgttggctggagatgcatgctagcctccctaccaatgc |
520 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||| ||| |||||||| | |||||||||||||||| |
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|
| T |
8909 |
agctagttaattgttggagttggatttggaggcttccagtttctgaaaatctaagacatttttgttggttggtgatgcatgatggcctccctaccaatgc |
8810 |
T |
|
| Q |
521 |
cttt |
524 |
Q |
| |
|
|||| |
|
|
| T |
8809 |
cttt |
8806 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0244; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 344 - 424
Target Start/End: Complemental strand, 14917 - 14837
Alignment:
| Q |
344 |
gagtgcttctccaaatggtcaatactcaactacttatggatataggtggttagatcataatctaactcaacaagtagagct |
424 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||| ||||||||||||||||||||||| |
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|
| T |
14917 |
gagtgcttctccaaatggtcaatactcatctagttatggatataggtggtttgatcagaatctaactcaacaagtagagct |
14837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 347 - 523
Target Start/End: Original strand, 13451467 - 13451643
Alignment:
| Q |
347 |
tgcttctccaaatggtcaatactcaactacttatggatataggtggttagatcataatctaactcaacaagtagagctagttaattgttggagttggata |
446 |
Q |
| |
|
||||| |||||||||||| | |||| || |||||||||||||| |||| |||| ||||||||| ||||| |||| | |||| ||||||||||||||| |
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|
| T |
13451467 |
tgcttatccaaatggtcagttctcaggtagttatggatataggtagttaaatcagaatctaacttaacaattagaacctgttatttgttggagttggatt |
13451566 |
T |
|
| Q |
447 |
tggaggcttcaagtttctgaaaatctatgacatttttgttggctggagatgcatgctagcctccctaccaatgcctt |
523 |
Q |
| |
|
|||||| |||||| |||||||| |||||||| | ||||| | |||||||||||| |||||||| |||||||| |
|
|
| T |
13451567 |
cagaggctatcggtttctaaaaatctaagacattttagctggcttgggatgcatgctagtctccctacgaatgcctt |
13451643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 344 - 524
Target Start/End: Complemental strand, 37665556 - 37665370
Alignment:
| Q |
344 |
gagtgcttctccaaatggtcaatactcaactacttatggatatag----gtggttagatcataatctaac---tcaacaagtagagctagttaattgttg |
436 |
Q |
| |
|
|||| ||||| |||||| | |||||||||||| ||| |||||||| ||||||||||| |||||||| ||||||| |||||| ||||| |||||| |
|
|
| T |
37665556 |
gagtacttcttcaaatgattaatactcaactagttaaggatatagctaggtggttagatcg-aatctaacgactcaacaaatagagccagttatttgttg |
37665458 |
T |
|
| Q |
437 |
gagttggatatggaggcttcaagtttctgaaaatctatgacatttttgttggctggagatgcatgctagcctccctaccaatgccttt |
524 |
Q |
| |
|
||| | || |||||||| | |||||||||||||| || ||||||||| | || |||||||||||||||||||||||||| |||| |
|
|
| T |
37665457 |
gaggtagacttggaggctaccgatttctgaaaatctaagaaatttttgtttgtcggcgatgcatgctagcctccctaccaatgtcttt |
37665370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 344 - 422
Target Start/End: Original strand, 53910630 - 53910708
Alignment:
| Q |
344 |
gagtgcttctccaaatggtcaatactcaactacttatggatataggtggttagatcataatctaactcaacaagtagag |
422 |
Q |
| |
|
|||||||||| | |||| ||||||||||||| |||| |||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
53910630 |
gagtgcttctttagatggccaatactcaactagttattgatatatgtggttagatcgaaatctaactcaacaagtagag |
53910708 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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