View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17149_high_6 (Length: 432)
Name: NF17149_high_6
Description: NF17149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17149_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 198 - 424
Target Start/End: Complemental strand, 44409704 - 44409478
Alignment:
| Q |
198 |
atacaggcggttgatagtgccttgcaatatgcaactattacaaatttacaaggtctgaaataaggttctcagtcaacaaggcttgtcaattcctctctca |
297 |
Q |
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| T |
44409704 |
atacaggcggttgatagtgccttgcaatatgcaactattacaaatttacaaggtctgaaataagcttctcagtcaacaaggcttgtcaattcctctctca |
44409605 |
T |
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| Q |
298 |
acccttggagtcccgttcgaaagcttcaagagaatcttgaggtgcctcgagggactctatcatgaatttcaactgcactctgtttgacccagcccttctt |
397 |
Q |
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| T |
44409604 |
acccttggagtcccgttcgacagcttcaagagaatcttgaggtgcctcgagggactctatcatgaatttcaactgcactctgcttgacccaacccttctt |
44409505 |
T |
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| Q |
398 |
tattgtttccttttatgatgatgatta |
424 |
Q |
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| T |
44409504 |
tattgtttccttttatgatgatgatta |
44409478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 53 - 187
Target Start/End: Original strand, 43498132 - 43498264
Alignment:
| Q |
53 |
tgaaataaaattatttaaacccataaataaaatattaatgactaaactcgtgatcttaggaggaggggggaagcagtattagtttcatagagcatctcag |
152 |
Q |
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| T |
43498132 |
tgaagtaaaattatttacagccataaataaaatatgaatgactaaactcatgatc--aggagaagaggaggaatagtattagtttcagagagcatcataa |
43498229 |
T |
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| Q |
153 |
ttcatgaaaatctagtcagataattcaagattgca |
187 |
Q |
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| T |
43498230 |
ttcatgtgaatctagtcagataattcaagattgca |
43498264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 25 - 114
Target Start/End: Original strand, 50610228 - 50610316
Alignment:
| Q |
25 |
aagagagtaaaaatctaatgtacagaagtgaaataaaattatttaaacccataaataaaatattaatgactaaactcgtgatcttaggag |
114 |
Q |
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| T |
50610228 |
aagagagtaagaatttaatgtacagacgtggagtaaaattatttacaaccataa-taaaatattaatgactaaactcgtgatcttaggag |
50610316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 118 - 187
Target Start/End: Original strand, 50610341 - 50610410
Alignment:
| Q |
118 |
gggggaagcagtattagtttcatagagcatctcagttcatgaaaatctagtcagataattcaagattgca |
187 |
Q |
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| T |
50610341 |
gggggaagcagtattagttacacagagcatcataattcatgcaaatttagtcagataattcaagattgca |
50610410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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