View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17149_high_8 (Length: 384)

Name: NF17149_high_8
Description: NF17149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17149_high_8
NF17149_high_8
[»] chr7 (6 HSPs)
chr7 (18-374)||(508360-508716)
chr7 (129-208)||(41508108-41508188)
chr7 (259-301)||(20032518-20032560)
chr7 (259-300)||(20043634-20043675)
chr7 (129-170)||(46341505-46341546)
chr7 (259-295)||(41508231-41508267)
[»] chr2 (6 HSPs)
chr2 (259-305)||(21229614-21229660)
chr2 (259-305)||(38496604-38496650)
chr2 (259-303)||(2761644-2761688)
chr2 (259-306)||(3268929-3268976)
chr2 (259-306)||(3269488-3269535)
chr2 (259-306)||(3270047-3270094)
[»] chr6 (6 HSPs)
chr6 (259-305)||(12143690-12143736)
chr6 (122-208)||(180341-180428)
chr6 (259-295)||(34837131-34837167)
chr6 (259-305)||(24789905-24789951)
chr6 (259-295)||(180471-180507)
chr6 (259-295)||(2950135-2950171)
[»] chr8 (5 HSPs)
chr8 (122-175)||(30112519-30112572)
chr8 (259-295)||(2520114-2520150)
chr8 (259-293)||(16890251-16890285)
chr8 (259-295)||(2207901-2207937)
chr8 (122-170)||(8251237-8251285)
[»] chr5 (4 HSPs)
chr5 (265-306)||(36477866-36477907)
chr5 (259-295)||(18705130-18705166)
chr5 (259-304)||(11691031-11691076)
chr5 (262-302)||(73647-73687)
[»] chr4 (5 HSPs)
chr4 (259-295)||(31707333-31707369)
chr4 (262-305)||(47231544-47231587)
chr4 (122-168)||(16572253-16572299)
chr4 (259-305)||(30615247-30615293)
chr4 (122-170)||(33721714-33721762)
[»] chr3 (6 HSPs)
chr3 (259-295)||(28695677-28695713)
chr3 (122-170)||(32211888-32211936)
chr3 (259-305)||(40344903-40344949)
chr3 (259-304)||(17003549-17003594)
chr3 (122-170)||(8825457-8825504)
chr3 (262-294)||(36659318-36659350)
[»] chr1 (5 HSPs)
chr1 (259-305)||(25130244-25130290)
chr1 (259-305)||(28165096-28165142)
chr1 (259-305)||(31003556-31003601)
chr1 (259-305)||(31152564-31152610)
chr1 (259-291)||(9851798-9851830)


Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 374
Target Start/End: Original strand, 508360 - 508716
Alignment:
Q  18 aaagggactatatatgagatgagttaagagaatgatattgacttatatttaactgctcccgtgctgactttattataagaaaattttgaagnnnnnnnta 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||    
T  508360 aaagggactatatatgagatgagttaagagaatgatattgacttatatttaactgctcccgtgctgactttattataagaaaattttgaagaaaaaaata 508459  T
Q  118 gtcatatttagaagaaaatttcacaatttttaaggtgaagttattgcttaaaaaatttcgtatctcttaattaatatttgtctttttaataacaaatggt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  508460 gtcatatttagaagaaaatttcacaatttttaaggtgaagttattgcttaaaaaatttcgtatctcttatttaatatttgtctttttaataacaaatggt 508559  T
Q  218 gtatttataatgtttcatgatcttctataaaagtactatactatttgtaaaaatattcaaaaagttacaataattaatcattgcattgannnnnnnnnnn 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               
T  508560 gtatttataatgtttcatgatcttctataaaagtactatactatttgtaaaaatattcaaaaagttacaataattaatcattgcattgatttttattttt 508659  T
Q  318 nnnnnncttcttataattagggtccggggagtaactgtcaatcatctactatctctg 374  Q
          |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  508660 atttttcttcttataattagggtccggggagtaactatcaatcatctactatctctg 508716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 129 - 208
Target Start/End: Original strand, 41508108 - 41508188
Alignment:
Q  129 aagaaaatttcacaatttttaaggtgaagttattgcttaaaa-aatttcgtatctcttaattaatatttgtctttttaata 208  Q
    |||||||| ||||||||||||||||| ||||||||||||||| | |||  || | |||| ||||| |||||||||||||||    
T  41508108 aagaaaatatcacaatttttaaggtgtagttattgcttaaaagacttttttaccccttatttaatgtttgtctttttaata 41508188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 301
Target Start/End: Complemental strand, 20032560 - 20032518
Alignment:
Q  259 tatttgtaaaaatattcaaaaagttacaataattaatcattgc 301  Q
    |||||||||||||||| |||||||||||| ||||||| |||||    
T  20032560 tatttgtaaaaatatttaaaaagttacaacaattaatgattgc 20032518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 300
Target Start/End: Complemental strand, 20043675 - 20043634
Alignment:
Q  259 tatttgtaaaaatattcaaaaagttacaataattaatcattg 300  Q
    |||||||||||||||| |||||||||||| ||||||| ||||    
T  20043675 tatttgtaaaaatatttaaaaagttacaacaattaatgattg 20043634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 170
Target Start/End: Original strand, 46341505 - 46341546
Alignment:
Q  129 aagaaaatttcacaatttttaaggtgaagttattgcttaaaa 170  Q
    |||||||| |||||| |||||||||| |||||||||||||||    
T  46341505 aagaaaatatcacaacttttaaggtgtagttattgcttaaaa 46341546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 295
Target Start/End: Original strand, 41508231 - 41508267
Alignment:
Q  259 tatttgtaaaaatattcaaaaagttacaataattaat 295  Q
    |||||||||||| ||||||||||||||| ||||||||    
T  41508231 tatttgtaaaaacattcaaaaagttacactaattaat 41508267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 259 - 305
Target Start/End: Original strand, 21229614 - 21229660
Alignment:
Q  259 tatttgtaaaaatattcaaaaagttacaataattaatcattgcattg 305  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||    
T  21229614 tatttgtaaaaatattcaaaaagttacaataattaatgattgcattg 21229660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 305
Target Start/End: Original strand, 38496604 - 38496650
Alignment:
Q  259 tatttgtaaaaatattcaaaaagttacaataattaatcattgcattg 305  Q
    |||||||||||||||||||||||||||| |||||||| || ||||||    
T  38496604 tatttgtaaaaatattcaaaaagttacactaattaatgatagcattg 38496650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 303
Target Start/End: Original strand, 2761644 - 2761688
Alignment:
Q  259 tatttgtaaaaatattcaaaaagttacaataattaatcattgcat 303  Q
    ||||| |||||||||||||||||||||| |||||||| |||||||    
T  2761644 tatttataaaaatattcaaaaagttacactaattaatgattgcat 2761688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 306
Target Start/End: Original strand, 3268929 - 3268976
Alignment:
Q  259 tatttgtaaaaatattcaaaaagttacaataattaatcattgcattga 306  Q
    |||||||||||||||||||||||||| | ||||||||  |||||||||    
T  3268929 tatttgtaaaaatattcaaaaagttatactaattaatagttgcattga 3268976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 306
Target Start/End: Original strand, 3269488 - 3269535
Alignment:
Q  259 tatttgtaaaaatattcaaaaagttacaataattaatcattgcattga 306  Q
    |||||||||||||||||||||||||| | ||||||||  |||||||||    
T  3269488 tatttgtaaaaatattcaaaaagttatactaattaatagttgcattga 3269535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 306
Target Start/End: Original strand, 3270047 - 3270094
Alignment:
Q  259 tatttgtaaaaatattcaaaaagttacaataattaatcattgcattga 306  Q
    |||||||||||||||||||||||||| | ||||||||  |||||||||    
T  3270047 tatttgtaaaaatattcaaaaagttatactaattaatagttgcattga 3270094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 259 - 305
Target Start/End: Complemental strand, 12143736 - 12143690
Alignment:
Q  259 tatttgtaaaaatattcaaaaagttacaataattaatcattgcattg 305  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||    
T  12143736 tatttgtaaaaatattcaaaaagttacattaattaatgattgcattg 12143690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 122 - 208
Target Start/End: Original strand, 180341 - 180428
Alignment:
Q  122 tatttagaagaaaatttcacaatttttaaggtgaagttattgcttaaaa-aatttcgtatctcttaattaatatttgtctttttaata 208  Q
    |||||| |||||||| |||||||||||||| || ||||||||||||||| | |||  || | |||| ||||| |||||||||||||||    
T  180341 tatttataagaaaatatcacaatttttaagatgtagttattgcttaaaagacttttataccccttatttaatgtttgtctttttaata 180428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 295
Target Start/End: Complemental strand, 34837167 - 34837131
Alignment:
Q  259 tatttgtaaaaatattcaaaaagttacaataattaat 295  Q
    |||||||||||||||||||||||||||| ||||||||    
T  34837167 tatttgtaaaaatattcaaaaagttacactaattaat 34837131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 305
Target Start/End: Complemental strand, 24789951 - 24789905
Alignment:
Q  259 tatttgtaaaaatattcaaaaagttacaataattaatcattgcattg 305  Q
    |||||||||||||||| ||||| |||||| ||||||| |||||||||    
T  24789951 tatttgtaaaaatatttaaaaaattacaacaattaatgattgcattg 24789905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 295
Target Start/End: Original strand, 180471 - 180507
Alignment:
Q  259 tatttgtaaaaatattcaaaaagttacaataattaat 295  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  180471 tatttgtaaacatattcaaaaagttacactaattaat 180507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 295
Target Start/End: Complemental strand, 2950171 - 2950135
Alignment:
Q  259 tatttgtaaaaatattcaaaaagttacaataattaat 295  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  2950171 tatttgtaaaaatattcaaaaaattacattaattaat 2950135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 175
Target Start/End: Complemental strand, 30112572 - 30112519
Alignment:
Q  122 tatttagaagaaaatttcacaatttttaaggtgaagttattgcttaaaaaattt 175  Q
    |||||| |||||||| |||||| |||||||||| ||||||||||||||| ||||    
T  30112572 tatttataagaaaatgtcacaaattttaaggtgtagttattgcttaaaagattt 30112519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 295
Target Start/End: Complemental strand, 2520150 - 2520114
Alignment:
Q  259 tatttgtaaaaatattcaaaaagttacaataattaat 295  Q
    |||||||||||||||||||||||||||| ||||||||    
T  2520150 tatttgtaaaaatattcaaaaagttacattaattaat 2520114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 293
Target Start/End: Complemental strand, 16890285 - 16890251
Alignment:
Q  259 tatttgtaaaaatattcaaaaagttacaataatta 293  Q
    |||||||||||||||||||||||||||| ||||||    
T  16890285 tatttgtaaaaatattcaaaaagttacattaatta 16890251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 295
Target Start/End: Original strand, 2207901 - 2207937
Alignment:
Q  259 tatttgtaaaaatattcaaaaagttacaataattaat 295  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  2207901 tatttgtaaaaatattcaaaaagttacactaaataat 2207937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 170
Target Start/End: Original strand, 8251237 - 8251285
Alignment:
Q  122 tatttagaagaaaatttcacaatttttaaggtgaagttattgcttaaaa 170  Q
    |||||| |||||||| |||||| |||||||||| | |||||||||||||    
T  8251237 tatttataagaaaatatcacaacttttaaggtgtaattattgcttaaaa 8251285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 265 - 306
Target Start/End: Complemental strand, 36477907 - 36477866
Alignment:
Q  265 taaaaatattcaaaaagttacaataattaatcattgcattga 306  Q
    |||||||||||||||||||||| |||||||| ||||||||||    
T  36477907 taaaaatattcaaaaagttacattaattaatgattgcattga 36477866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 295
Target Start/End: Original strand, 18705130 - 18705166
Alignment:
Q  259 tatttgtaaaaatattcaaaaagttacaataattaat 295  Q
    |||||||||||||||||||||||||||| ||||||||    
T  18705130 tatttgtaaaaatattcaaaaagttacactaattaat 18705166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 304
Target Start/End: Complemental strand, 11691076 - 11691031
Alignment:
Q  259 tatttgtaaaaatattcaaaaagttacaataattaatcattgcatt 304  Q
    |||||||||||||||||||||||||| |  ||||||| ||||||||    
T  11691076 tatttgtaaaaatattcaaaaagttaaatcaattaataattgcatt 11691031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 302
Target Start/End: Original strand, 73647 - 73687
Alignment:
Q  262 ttgtaaaaatattcaaaaagttacaataattaatcattgca 302  Q
    ||||||||||||| ||||||||||| |||||||| ||||||    
T  73647 ttgtaaaaatattaaaaaagttacactaattaatgattgca 73687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 295
Target Start/End: Complemental strand, 31707369 - 31707333
Alignment:
Q  259 tatttgtaaaaatattcaaaaagttacaataattaat 295  Q
    |||||||||||||||||||||||||||| ||||||||    
T  31707369 tatttgtaaaaatattcaaaaagttacactaattaat 31707333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 262 - 305
Target Start/End: Complemental strand, 47231587 - 47231544
Alignment:
Q  262 ttgtaaaaatattcaaaaagttacaataattaatcattgcattg 305  Q
    ||||||||||||||||||||||||| |||||||| ||| |||||    
T  47231587 ttgtaaaaatattcaaaaagttacattaattaatgattccattg 47231544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 168
Target Start/End: Original strand, 16572253 - 16572299
Alignment:
Q  122 tatttagaagaaaatttcacaatttttaaggtgaagttattgcttaa 168  Q
    |||||| |||||||| |||||| |||||||||| |||||||||||||    
T  16572253 tatttataagaaaatgtcacaacttttaaggtgtagttattgcttaa 16572299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 305
Target Start/End: Original strand, 30615247 - 30615293
Alignment:
Q  259 tatttgtaaaaatattcaaaaagttacaataattaatcattgcattg 305  Q
    |||||||||||||||| |||||||||||| ||| ||| |||||||||    
T  30615247 tatttgtaaaaatatttaaaaagttacaacaatgaataattgcattg 30615293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 33721762 - 33721714
Alignment:
Q  122 tatttagaagaaaatttcacaatttttaaggtgaagttattgcttaaaa 170  Q
    |||||| |||||||| ||||||||||||| ||| |||||||| ||||||    
T  33721762 tatttataagaaaatgtcacaatttttaatgtgtagttattgtttaaaa 33721714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 295
Target Start/End: Original strand, 28695677 - 28695713
Alignment:
Q  259 tatttgtaaaaatattcaaaaagttacaataattaat 295  Q
    |||||||||||||||||||||||||||| ||||||||    
T  28695677 tatttgtaaaaatattcaaaaagttacactaattaat 28695713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 32211936 - 32211888
Alignment:
Q  122 tatttagaagaaaatttcacaatttttaaggtgaagttattgcttaaaa 170  Q
    |||||| ||||||||||||||| |||||||||| |||||||| ||||||    
T  32211936 tatttataagaaaatttcacaacttttaaggtgtagttattgtttaaaa 32211888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 305
Target Start/End: Complemental strand, 40344949 - 40344903
Alignment:
Q  259 tatttgtaaaaatattcaaaaagttacaataattaatcattgcattg 305  Q
    ||||||||||||||||||||||||| ||||||| ||| | |||||||    
T  40344949 tatttgtaaaaatattcaaaaagttgcaataatcaatgactgcattg 40344903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 304
Target Start/End: Complemental strand, 17003594 - 17003549
Alignment:
Q  259 tatttgtaaaaatattcaaaaagttacaataattaatcattgcatt 304  Q
    |||||||||||||||||||||||||||| |||| ||| | ||||||    
T  17003594 tatttgtaaaaatattcaaaaagttacattaatcaatgaatgcatt 17003549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 8825504 - 8825457
Alignment:
Q  122 tatttagaagaaaatttcacaatttttaaggtgaagttattgcttaaaa 170  Q
    |||||| |||||||| |||||||||| |||||| |||||||||||||||    
T  8825504 tatttataagaaaatgtcacaatttt-aaggtgtagttattgcttaaaa 8825457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 294
Target Start/End: Original strand, 36659318 - 36659350
Alignment:
Q  262 ttgtaaaaatattcaaaaagttacaataattaa 294  Q
    ||||||||||||||||||||||||| |||||||    
T  36659318 ttgtaaaaatattcaaaaagttacattaattaa 36659350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 305
Target Start/End: Original strand, 25130244 - 25130290
Alignment:
Q  259 tatttgtaaaaatattcaaaaagttacaataattaatcattgcattg 305  Q
    ||||||||||| |||||||||| |||||||||||||| | |||||||    
T  25130244 tatttgtaaaagtattcaaaaatttacaataattaataactgcattg 25130290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 305
Target Start/End: Complemental strand, 28165142 - 28165096
Alignment:
Q  259 tatttgtaaaaatattcaaaaagttacaataattaatcattgcattg 305  Q
    |||||||||||||||||||||| ||||||||||| || |||| ||||    
T  28165142 tatttgtaaaaatattcaaaaaattacaataattgatgattgtattg 28165096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 305
Target Start/End: Complemental strand, 31003601 - 31003556
Alignment:
Q  259 tatttgtaaaaatattcaaaaagttacaataattaatcattgcattg 305  Q
    ||||||||||||||||||||||||||| || |||||| |||||||||    
T  31003601 tatttgtaaaaatattcaaaaagttac-atgattaatgattgcattg 31003556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 305
Target Start/End: Original strand, 31152564 - 31152610
Alignment:
Q  259 tatttgtaaaaatattcaaaaagttacaataattaatcattgcattg 305  Q
    ||||||||||||||||||||||||||||  ||||| | |||||||||    
T  31152564 tatttgtaaaaatattcaaaaagttacatgaattattaattgcattg 31152610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 291
Target Start/End: Complemental strand, 9851830 - 9851798
Alignment:
Q  259 tatttgtaaaaatattcaaaaagttacaataat 291  Q
    |||||||||||||||||||||||||||| ||||    
T  9851830 tatttgtaaaaatattcaaaaagttacattaat 9851798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University