View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17149_low_10 (Length: 377)

Name: NF17149_low_10
Description: NF17149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17149_low_10
NF17149_low_10
[»] chr6 (10 HSPs)
chr6 (1-363)||(11155482-11155844)
chr6 (1-375)||(11195929-11196303)
chr6 (1-325)||(11132200-11132524)
chr6 (223-363)||(11160566-11160706)
chr6 (223-363)||(11199147-11199287)
chr6 (1-84)||(11208583-11208666)
chr6 (1-84)||(11275145-11275228)
chr6 (1-75)||(11315600-11315674)
chr6 (216-265)||(11169976-11170025)
chr6 (1-69)||(11165534-11165602)
[»] chr8 (1 HSPs)
chr8 (213-266)||(12527925-12527978)


Alignment Details
Target: chr6 (Bit Score: 295; Significance: 1e-165; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 11155482 - 11155844
Alignment:
Q  1 cttcatctttgtacttctcagcttctttgatcttcctcttaatatcctcctttgacaaccttcccttgtcacttattattttaaccttcttattaactcc 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11155482 cttcatctttgtacttctcagcttctttgatcttcctctcaatatcctcctttgacaaccttcccttgtcacttattattttaaccttcttattaactcc 11155581  T
Q  101 aagggacttttccgtgctacaaacgtctaagatgccatcatcatcgatttggaagctgattttaatctgaggaccacctgccggagccggaggaatttcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11155582 aagggacttttccgtgctacaaacgtctaagatgccatcatcatcgatttggaagctgattttaatctgaggaacacctgccggagccggaggaatttcc 11155681  T
Q  201 aaaacaaattttccaagcaagttgttttccctagctattttcctctcaccttcataaacatgaattaaaatattgatttggttgtcaacatgtgtggtga 300  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||  | |||||||||||    
T  11155682 aaaacaaattttccaagcaagttgttttccctagttattttcctctcaccttcataaacatgaattagaatattcatttggttgtgcaaatgtgtggtga 11155781  T
Q  301 atacatcttccatgtcggtaggaatgtgggtattccttgggattattatgtccataatccccc 363  Q
    |||||| |||||| | || |||||| | ||||||||| ||||||||| ||| |||||||||||    
T  11155782 atacatgttccattttggcaggaattttggtattcctagggattattgtgttcataatccccc 11155844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 11195929 - 11196303
Alignment:
Q  1 cttcatctttgtacttctcagcttctttgatcttcctcttaatatcctcctttgacaaccttcccttgtcacttattattttaaccttcttattaactcc 100  Q
    |||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||| |||||||| |||||||||||||||||||| |||||||||||    
T  11195929 cttcatctttgtacttctcagcttctttgatcatcctctcaatttcctcctttgacaatcttcccttatcacttattattttaaccttattattaactcc 11196028  T
Q  101 aagggacttttccgtgctacaaacgtctaagatgccatcatcatcgatttggaagctgattttaatctgaggaccacctgccggagccggaggaatttcc 200  Q
    |||| | || ||| ||||||| | || |||||||||||| |||||||||||||||| |||| | ||||||||| ||||||||| ||| ||||||||||||    
T  11196029 aaggaatttctccctgctacagatgtgtaagatgccatcgtcatcgatttggaagcggattatgatctgaggaacacctgccgcagcaggaggaatttcc 11196128  T
Q  201 aaaacaaattttccaagcaagttgttttccctagctattttcctctcaccttcataaacatgaattaaaatattgatttggttgtcaacatgtgtggtga 300  Q
    || |||||| |||| ||||||||||| ||||||| |||||||||||||||||||||||||| ||||| |||||| ||||||||||  | |||||||||||    
T  11196129 aacacaaatcttcctagcaagttgttgtccctagttattttcctctcaccttcataaacatcaattagaatattcatttggttgtgcaaatgtgtggtga 11196228  T
Q  301 atacatcttccatgtcggtaggaatgtgggtattccttgggattattatgtccataatccccctatgcttctcca 375  Q
    |||||| |||||| | || |||||| | ||||||||| ||||||||||| ||||||||||||| ||| |||||||    
T  11196229 atacatgttccattttggcaggaattttggtattcctagggattattatttccataatccccccatgtttctcca 11196303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 11132200 - 11132524
Alignment:
Q  1 cttcatctttgtacttctcagcttctttgatcttcctcttaatatcctcctttgacaaccttcccttgtcacttattattttaaccttcttattaactcc 100  Q
    ||||||| ||||||||||||||||||| |||| |||||| ||| || || ||||||| ||||||||||||| || ||||| | || ||||| || |||||    
T  11132200 cttcatccttgtacttctcagcttcttcgatcatcctctcaatctcttcttttgacagccttcccttgtcatttcttattgtcacattcttttttactcc 11132299  T
Q  101 aagggacttttccgtgctacaaacgtctaagatgccatcatcatcgatttggaagctgattttaatctgaggaccacctgccggagccggaggaatttcc 200  Q
     ||  | ||||| |||  | | || |  |||||||| |||| ||| |||||||| ||||   | || |||||   |||||||||||| || |||||||||    
T  11132300 gagaaatttttcggtggcagagacatgcaagatgccgtcattatcaatttggaaactgaccatgatttgaggtatacctgccggagctgggggaatttcc 11132399  T
Q  201 aaaacaaattttccaagcaagttgttttccctagctattttcctctcaccttcataaacatgaattaaaatattgatttggttgtcaacatgtgtggtga 300  Q
    |||||||||||||| |||||||||||  || ||| |||||| || ||||| || ||||||||||| ||||||||| ||||||| | || |||||| ||||    
T  11132400 aaaacaaattttcctagcaagttgttccccatagttatttttctttcaccctcgtaaacatgaatcaaaatattggtttggttatgaagatgtgttgtga 11132499  T
Q  301 atacatcttccatgtcggtaggaat 325  Q
    |||| | |||||||  |||||||||    
T  11132500 atacttgttccatgctggtaggaat 11132524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 223 - 363
Target Start/End: Original strand, 11160566 - 11160706
Alignment:
Q  223 tgttttccctagctattttcctctcaccttcataaacatgaattaaaatattgatttggttgtcaacatgtgtggtgaatacatcttccatgtcggtagg 322  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||  | ||||||||||||||||| |||||| | || |||    
T  11160566 tgttttccctagttattttcctctcaccttcataaacatgaattagaatattcatttggttgtgcaaatgtgtggtgaatacatgttccattttggcagg 11160665  T
Q  323 aatgtgggtattccttgggattattatgtccataatccccc 363  Q
    ||| | ||||||||| ||||||||| ||| |||||||||||    
T  11160666 aattttggtattcctagggattattgtgttcataatccccc 11160706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 223 - 363
Target Start/End: Original strand, 11199147 - 11199287
Alignment:
Q  223 tgttttccctagctattttcctctcaccttcataaacatgaattaaaatattgatttggttgtcaacatgtgtggtgaatacatcttccatgtcggtagg 322  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||| || |||||||  | ||||||||||||||||| |||||| | || |||    
T  11199147 tgttttccctagttattttcctctcaccttcataaacatgaattagaatattcatgtggttgtgcaaatgtgtggtgaatacatgttccattttggcagg 11199246  T
Q  323 aatgtgggtattccttgggattattatgtccataatccccc 363  Q
    ||| | ||||||||| ||||||||| ||| |||||||||||    
T  11199247 aattttggtattcctagggattattgtgttcataatccccc 11199287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 11208583 - 11208666
Alignment:
Q  1 cttcatctttgtacttctcagcttctttgatcttcctcttaatatcctcctttgacaaccttcccttgtcacttattattttaa 84  Q
    ||||||||||||| |||||||||||  ||||| |||||| ||| |||||||||||||  |||||||||||| ||| ||||||||    
T  11208583 cttcatctttgtatttctcagcttcactgatcatcctctcaatttcctcctttgacagtcttcccttgtcatttactattttaa 11208666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 11275145 - 11275228
Alignment:
Q  1 cttcatctttgtacttctcagcttctttgatcttcctcttaatatcctcctttgacaaccttcccttgtcacttattattttaa 84  Q
    ||||||||||||||||||||||||| |||||| |||||| ||| ||||| |||||||  |||||||||| | ||| ||||||||    
T  11275145 cttcatctttgtacttctcagcttcattgatcatcctctcaatttcctcttttgacagtcttcccttgttatttactattttaa 11275228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 11315674 - 11315600
Alignment:
Q  1 cttcatctttgtacttctcagcttctttgatcttcctcttaatatcctcctttgacaaccttcccttgtcactta 75  Q
    |||| |||||||||||||||||||| ||||||||||||| ||| |||| | |||||  |||| ||||||||||||    
T  11315674 cttcgtctttgtacttctcagcttcgttgatcttcctctcaatttccttcattgaccgccttaccttgtcactta 11315600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 11169976 - 11170025
Alignment:
Q  216 agcaagttgttttccctagctattttcctctcaccttcataaacatgaat 265  Q
    ||||||||||| ||| ||| ||||| ||||||||| ||||||||||||||    
T  11169976 agcaagttgttgtccttagttatttgcctctcaccctcataaacatgaat 11170025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 11165534 - 11165602
Alignment:
Q  1 cttcatctttgtacttctcagcttctttgatcttcctcttaatatcctcctttgacaaccttcccttgt 69  Q
    ||||||||||||| |||||||||||| | ||| |||| | ||  ||||||||||||| |||||| ||||    
T  11165534 cttcatctttgtatttctcagcttctcttatcatcctatcaacttcctcctttgacagccttcctttgt 11165602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 266
Target Start/End: Original strand, 12527925 - 12527978
Alignment:
Q  213 ccaagcaagttgttttccctagctattttcctctcaccttcataaacatgaatt 266  Q
    ||||||||||||||||| ||||||||  | ||||| || |||||||||||||||    
T  12527925 ccaagcaagttgttttcgctagctatcattctctcgccctcataaacatgaatt 12527978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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