View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17149_low_14 (Length: 364)

Name: NF17149_low_14
Description: NF17149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17149_low_14
NF17149_low_14
[»] chr2 (4 HSPs)
chr2 (6-349)||(28598102-28598455)
chr2 (5-75)||(13506381-13506451)
chr2 (244-278)||(22725305-22725339)
chr2 (244-296)||(33276234-33276286)
[»] chr7 (9 HSPs)
chr7 (18-346)||(2678965-2679293)
chr7 (233-279)||(8722983-8723029)
chr7 (233-278)||(33796227-33796272)
chr7 (233-289)||(5318374-5318430)
chr7 (233-276)||(17055766-17055809)
chr7 (233-279)||(27601782-27601828)
chr7 (233-275)||(45992814-45992856)
chr7 (233-270)||(5865350-5865387)
chr7 (233-293)||(6520158-6520218)
[»] chr8 (4 HSPs)
chr8 (176-329)||(4331410-4331566)
chr8 (7-68)||(4331639-4331700)
chr8 (233-275)||(4987925-4987967)
chr8 (244-296)||(30356196-30356248)
[»] chr6 (6 HSPs)
chr6 (233-333)||(28576309-28576409)
chr6 (233-275)||(19255878-19255920)
chr6 (28-74)||(28576101-28576147)
chr6 (233-275)||(33640156-33640198)
chr6 (233-330)||(333535-333631)
chr6 (233-270)||(5085886-5085923)
[»] chr3 (3 HSPs)
chr3 (156-225)||(12032589-12032658)
chr3 (244-279)||(30167215-30167250)
chr3 (233-279)||(28308710-28308756)
[»] chr4 (3 HSPs)
chr4 (233-278)||(29553600-29553645)
chr4 (233-275)||(19647947-19647989)
chr4 (233-273)||(23657635-23657675)
[»] chr1 (3 HSPs)
chr1 (233-297)||(3073966-3074030)
chr1 (233-276)||(21405075-21405118)
chr1 (233-275)||(25504853-25504895)
[»] chr5 (1 HSPs)
chr5 (233-270)||(11574554-11574591)


Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 6 - 349
Target Start/End: Complemental strand, 28598455 - 28598102
Alignment:
Q  6 gtgatggggaaggtgttgacgatggagggtggtttgaagagtgtattggaaagaaggttggtaatgggagagcgagagatacttttttctggacagataa 105  Q
    ||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| || |    
T  28598455 gtgatggtgaaggtttcgacgatggagggtggtttgaagagtgtattggaaagaaggttggtaatgggagagtgagagatacttttttccggacaaatta 28598356  T
Q  106 gtgtttaggagggcaccacttgtgtgtgtg--cagtt---------ctttgacttggctaagaataagtcgattacgatggcggagatgtgcgatttggg 194  Q
    ||| | ||||||||||| ||||||||||||  | |||         ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  28598355 gtggt-aggagggcaccccttgtgtgtgtgtgcggtttaggcgtctctttgacttggctaagaataagtcgattacgatagcggagatgtgcgatttggg 28598257  T
Q  195 gtgggaggatggaggggtggcttgatagtggcgacgaatgtgggcgtgagaggaggagatgttaggggagtgtaggactttactttatgatattactttg 294  Q
    ||||||||| |||||||||||||||||||||||  || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28598256 gtgggaggagggaggggtggcttgatagtggcggtgactttgggcgtgagaggaggagatgttaggggagtgtaggactttactttatgatattactttg 28598157  T
Q  295 caggctaattattcaggcatttggcaatggaagcttaattttgacgaaggttatt 349  Q
     ||||||||||| || |||||||||||||||||||| ||||||||||||||||||    
T  28598156 gaggctaattatgcaagcatttggcaatggaagcttcattttgacgaaggttatt 28598102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 13506381 - 13506451
Alignment:
Q  5 tgtgatggggaaggtgttgacgatggagggtggtttgaagagtgtattggaaagaaggttggtaatgggag 75  Q
    ||||||||||||||||| || |  ||||||||||| || ||| ||||||| | ||||||||||||||||||    
T  13506381 tgtgatggggaaggtgtggagggaggagggtggttcgaggagagtattgggaggaaggttggtaatgggag 13506451  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 278
Target Start/End: Original strand, 22725305 - 22725339
Alignment:
Q  244 gaggaggagatgttaggggagtgtaggactttact 278  Q
    |||||||||||||||| ||||||||||||||||||    
T  22725305 gaggaggagatgttagaggagtgtaggactttact 22725339  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 296
Target Start/End: Original strand, 33276234 - 33276286
Alignment:
Q  244 gaggaggagatgttaggggagtgtaggactttactttatgatattactttgca 296  Q
    ||||||||  |||||  ||||||||||||||||||| |||||||| |||||||    
T  33276234 gaggaggaattgttaaaggagtgtaggactttacttcatgatatttctttgca 33276286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 5e-47; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 18 - 346
Target Start/End: Original strand, 2678965 - 2679293
Alignment:
Q  18 gtgttgacgatggagggtggtttgaagagtgtattggaaagaaggttggtaatgggagagcgagagatactttttt--ctggacagataagtgtttagga 115  Q
    ||||| ||| ||||||||||||||| ||||||||||| | ||||| ||||||||||||||      ||||||||||  || ||| |||| ||| ||||||    
T  2678965 gtgttaacggtggagggtggtttgaggagtgtattgggaggaaggatggtaatgggagag------atacttttttttctagacggatacgtggttagga 2679058  T
Q  116 gggcaccacttgtgtgtgtgcagt-------tctttgacttggctaagaataagtcgattacgatggcggagatgtgcgatttggggtgggaggatggag 208  Q
    ||||| | |||||||||| |   |       |||| ||| ||||| ||||||||||||||||| || | ||||||| |||||| ||||||||||| ||||    
T  2679059 gggcaacccttgtgtgtgcggtttagacgcctcttcgacgtggctgagaataagtcgattacggtgtcagagatgtacgatttagggtgggaggaaggag 2679158  T
Q  209 gggtggcttgatagtggcgacgaatgtgggcgtgagaggaggagatgttaggggagtgtaggactttactttatgatattactttgcaggctaattattc 308  Q
    ||||||||||   |  ||| ||  ||||| || |   ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2679159 gggtggcttggaggcagcggcggttgtggacgcg---ggaggagatattaggggagtgtaggactttactttatgatattactttgtaggctaattattc 2679255  T
Q  309 aggcatttggcaatggaagcttaattttgacgaaggtt 346  Q
    || || |||||||||||||||  ||| |||||||||||    
T  2679256 agacagttggcaatggaagctccattctgacgaaggtt 2679293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 279
Target Start/End: Original strand, 8722983 - 8723029
Alignment:
Q  233 tgtgggcgtgagaggaggagatgttaggggagtgtaggactttactt 279  Q
    ||||||||||||||||||||||| ||| ||||||||||| |||||||    
T  8722983 tgtgggcgtgagaggaggagatggtagaggagtgtaggattttactt 8723029  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 278
Target Start/End: Original strand, 33796227 - 33796272
Alignment:
Q  233 tgtgggcgtgagaggaggagatgttaggggagtgtaggactttact 278  Q
    |||||||||| ||||| |||||||||| ||||||||||||||||||    
T  33796227 tgtgggcgtgggaggaagagatgttagaggagtgtaggactttact 33796272  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 289
Target Start/End: Complemental strand, 5318430 - 5318374
Alignment:
Q  233 tgtgggcgtgagaggaggagatgttaggggagtgtaggactttactttatgatatta 289  Q
    ||||| |||| ||||||||| |||||||||||||||||||| | ||| |||||||||    
T  5318430 tgtggacgtgtgaggaggagttgttaggggagtgtaggactattcttcatgatatta 5318374  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 276
Target Start/End: Complemental strand, 17055809 - 17055766
Alignment:
Q  233 tgtgggcgtgagaggaggagatgttaggggagtgtaggacttta 276  Q
    ||||||| |||||||||||| |||||||||||||||||| ||||    
T  17055809 tgtgggcatgagaggaggagttgttaggggagtgtaggatttta 17055766  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 279
Target Start/End: Original strand, 27601782 - 27601828
Alignment:
Q  233 tgtgggcgtgagaggaggagatgttaggggagtgtaggactttactt 279  Q
    |||||||||| |||||||||| |||||||||||||| || |||||||    
T  27601782 tgtgggcgtgggaggaggagaagttaggggagtgtaagattttactt 27601828  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 275
Target Start/End: Complemental strand, 45992856 - 45992814
Alignment:
Q  233 tgtgggcgtgagaggaggagatgttaggggagtgtaggacttt 275  Q
    |||||||||| |||||||||||||||| |||||||||| ||||    
T  45992856 tgtgggcgtgggaggaggagatgttagtggagtgtagggcttt 45992814  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 270
Target Start/End: Complemental strand, 5865387 - 5865350
Alignment:
Q  233 tgtgggcgtgagaggaggagatgttaggggagtgtagg 270  Q
    |||||||||||||||||||| |||||| ||||||||||    
T  5865387 tgtgggcgtgagaggaggagttgttagcggagtgtagg 5865350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 293
Target Start/End: Original strand, 6520158 - 6520218
Alignment:
Q  233 tgtgggcgtgagaggaggagatgttaggggagtgtaggactttactttatgatattacttt 293  Q
    |||||||||| | ||||||| | |||| |||||||||||| |||||| |||||||| ||||    
T  6520158 tgtgggcgtgggtggaggagttattagtggagtgtaggacattacttcatgatatttcttt 6520218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 176 - 329
Target Start/End: Complemental strand, 4331566 - 4331410
Alignment:
Q  176 cggagatgtgcgatttggggtgggaggatggaggggtggcttgatagtggcga---cgaatgtgggcgtgagaggaggagatgttaggggagtgtaggac 272  Q
    ||||||||||||||||||| |||||||| ||||||||||||||  ||||| |    ||  |||||||||||||||||||||||||||||||||| | |||    
T  4331566 cggagatgtgcgatttgggatgggaggaaggaggggtggcttggcagtggtggtggcggttgtgggcgtgagaggaggagatgttaggggagtgaatgac 4331467  T
Q  273 tttactttatgatattactttgcaggctaattattcaggcatttggcaatggaagct 329  Q
    ||||||||||||||||||||||||| |||||||||||| |  |||||||||||||||    
T  4331466 tttactttatgatattactttgcagactaattattcagacggttggcaatggaagct 4331410  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 4331700 - 4331639
Alignment:
Q  7 tgatggggaaggtgttgacgatggagggtggtttgaagagtgtattggaaagaaggttggta 68  Q
    ||||||||||| |||||||| ||||||||||||||| ||||||||||| | |||||||||||    
T  4331700 tgatggggaagatgttgacggtggagggtggtttgaggagtgtattgggaggaaggttggta 4331639  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 275
Target Start/End: Original strand, 4987925 - 4987967
Alignment:
Q  233 tgtgggcgtgagaggaggagatgttaggggagtgtaggacttt 275  Q
    |||||||||| |||||||||||||||| |||||||||| ||||    
T  4987925 tgtgggcgtgggaggaggagatgttagtggagtgtagggcttt 4987967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 296
Target Start/End: Complemental strand, 30356248 - 30356196
Alignment:
Q  244 gaggaggagatgttaggggagtgtaggactttactttatgatattactttgca 296  Q
    |||||||||||||||| |||||||| ||  |||||| ||||||||||| ||||    
T  30356248 gaggaggagatgttagaggagtgtatgatgttacttcatgatattactatgca 30356196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 233 - 333
Target Start/End: Original strand, 28576309 - 28576409
Alignment:
Q  233 tgtgggcgtgagaggaggagatgttaggggagtgtaggactttactttatgatattactttgcaggctaattattcaggcatttggcaatggaagcttaa 332  Q
    |||||||||||||||||||| ||||||||||||||||||||||| || || || |||||||||||||||| ||||||| ||  |||||||||||||||||    
T  28576309 tgtgggcgtgagaggaggagttgttaggggagtgtaggactttaattcataatgttactttgcaggctaactattcagacaaatggcaatggaagcttaa 28576408  T
Q  333 t 333  Q
    |    
T  28576409 t 28576409  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 275
Target Start/End: Complemental strand, 19255920 - 19255878
Alignment:
Q  233 tgtgggcgtgagaggaggagatgttaggggagtgtaggacttt 275  Q
    |||||||||| |||||||||||||||| |||||||||| ||||    
T  19255920 tgtgggcgtgggaggaggagatgttagtggagtgtagggcttt 19255878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 74
Target Start/End: Original strand, 28576101 - 28576147
Alignment:
Q  28 tggagggtggtttgaagagtgtattggaaagaaggttggtaatggga 74  Q
    |||||| |||||||| ||||||||||| | |||||||||||||||||    
T  28576101 tggaggatggtttgaggagtgtattgggaggaaggttggtaatggga 28576147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 275
Target Start/End: Complemental strand, 33640198 - 33640156
Alignment:
Q  233 tgtgggcgtgagaggaggagatgttaggggagtgtaggacttt 275  Q
    |||||||||| |||||||||||||||| |||||||||| ||||    
T  33640198 tgtgggcgtgggaggaggagatgttagtggagtgtagggcttt 33640156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 330
Target Start/End: Original strand, 333535 - 333631
Alignment:
Q  233 tgtgggcgtgagaggaggagatgttaggggagtgtaggactttactttatgatattactttgcaggctaattattcaggcatttggcaatggaagctt 330  Q
    ||||||| || || |||||| |||||| ||||||||||||||||| | || || || || |||||||| | ||||||| ||  |||||||||||||||    
T  333535 tgtgggcatgggatgaggagttgttagaggagtgtaggactttacatcataatgttgctatgcaggct-actattcagacaaatggcaatggaagctt 333631  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 270
Target Start/End: Original strand, 5085886 - 5085923
Alignment:
Q  233 tgtgggcgtgagaggaggagatgttaggggagtgtagg 270  Q
    |||||||||| |||||||||||||||| ||||||||||    
T  5085886 tgtgggcgtgggaggaggagatgttagaggagtgtagg 5085923  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 225
Target Start/End: Original strand, 12032589 - 12032658
Alignment:
Q  156 gaataagtcgattacgatggcggagatgtgcgatttggggtgggaggatggaggggtggcttgatagtgg 225  Q
    |||||||||||||||| | | || |||||| |||||||| ||||||||||||||||| |||||| |||||    
T  12032589 gaataagtcgattacggttgtggtgatgtgtgatttgggttgggaggatggaggggtagcttgacagtgg 12032658  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 279
Target Start/End: Original strand, 30167215 - 30167250
Alignment:
Q  244 gaggaggagatgttaggggagtgtaggactttactt 279  Q
    |||||||||||||||| |||||||||||||||||||    
T  30167215 gaggaggagatgttagcggagtgtaggactttactt 30167250  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 279
Target Start/End: Complemental strand, 28308756 - 28308710
Alignment:
Q  233 tgtgggcgtgagaggaggagatgttaggggagtgtaggactttactt 279  Q
    |||||||||| ||||||||||| |||||||||||||| | |||||||    
T  28308756 tgtgggcgtgggaggaggagatcttaggggagtgtagaattttactt 28308710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 278
Target Start/End: Original strand, 29553600 - 29553645
Alignment:
Q  233 tgtgggcgtgagaggaggagatgttaggggagtgtaggactttact 278  Q
    |||||||||| ||||||||| |||||| ||||||||||||||||||    
T  29553600 tgtgggcgtgggaggaggagttgttagaggagtgtaggactttact 29553645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 275
Target Start/End: Complemental strand, 19647989 - 19647947
Alignment:
Q  233 tgtgggcgtgagaggaggagatgttaggggagtgtaggacttt 275  Q
    |||||||||| |||||||||||||||| |||||||||| ||||    
T  19647989 tgtgggcgtgggaggaggagatgttagtggagtgtagggcttt 19647947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 23657675 - 23657635
Alignment:
Q  233 tgtgggcgtgagaggaggagatgttaggggagtgtaggact 273  Q
    |||||||||| ||||||||| |||||| |||||||||||||    
T  23657675 tgtgggcgtgggaggaggagttgttagaggagtgtaggact 23657635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 297
Target Start/End: Complemental strand, 3074030 - 3073966
Alignment:
Q  233 tgtgggcgtgagaggaggagatgttaggggagtgtaggactttactttatgatattactttgcag 297  Q
    ||||||| || ||||||||| |||||||||||||||||| |||||| | ||| ||||| ||||||    
T  3074030 tgtgggcctgggaggaggagttgttaggggagtgtaggattttactgtctgacattaccttgcag 3073966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 276
Target Start/End: Complemental strand, 21405118 - 21405075
Alignment:
Q  233 tgtgggcgtgagaggaggagatgttaggggagtgtaggacttta 276  Q
    ||||||| |||||||||||| |||||||||||||||||| ||||    
T  21405118 tgtgggcatgagaggaggagttgttaggggagtgtaggatttta 21405075  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 275
Target Start/End: Original strand, 25504853 - 25504895
Alignment:
Q  233 tgtgggcgtgagaggaggagatgttaggggagtgtaggacttt 275  Q
    |||||||||| |||||||||||||||| |||||||||| ||||    
T  25504853 tgtgggcgtgggaggaggagatgttagtggagtgtagggcttt 25504895  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 270
Target Start/End: Original strand, 11574554 - 11574591
Alignment:
Q  233 tgtgggcgtgagaggaggagatgttaggggagtgtagg 270  Q
    |||||||||| |||||||||||||||| ||||||||||    
T  11574554 tgtgggcgtgggaggaggagatgttagaggagtgtagg 11574591  T

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