View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17149_low_15 (Length: 309)
Name: NF17149_low_15
Description: NF17149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17149_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 4 - 292
Target Start/End: Complemental strand, 49424456 - 49424168
Alignment:
| Q |
4 |
atattccattttagtgtccgtgtattttcagatattacgaaataatgtttaaatcatattgtatggaaagtggaaggtatagaataagttataatttttt |
103 |
Q |
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| T |
49424456 |
atatttcattttattgtctgtgtattttaagatattacgaaataatgtttccatcctattgtttagaaaatggacggaatagaacaagttataatttttt |
49424357 |
T |
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| Q |
104 |
attccatttttaacattttcaaaacaactattatgatgtaaaacatattattactaattttatctagttcagcaattcaacgacccacacaaaagctcat |
203 |
Q |
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| T |
49424356 |
atttcatttttaaccttttcaaaaccactattatgatgtaaaacatattattactaattttatctacttcaacaattcaacgacccacacaaaagctcat |
49424257 |
T |
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| Q |
204 |
agatcattccaaacagaagcccataggaattgcgctcacttcacctacatgagaacatcaaagcgagacatgacatctcataggaattg |
292 |
Q |
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| T |
49424256 |
agatcatcccaaacagaagcccataggaattgcgctcacttcacctacatgagaacatcaaagcgagacatgacatctcataggaattg |
49424168 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 114
Target Start/End: Complemental strand, 8926418 - 8926363
Alignment:
| Q |
61 |
attgtatggaaagtggaaggtatagaataagttataatttt--ttattccattttt |
114 |
Q |
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| T |
8926418 |
attgtttggaaagtggacggaatagaatgagttataatttttgttattccattttt |
8926363 |
T |
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