View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17149_low_17 (Length: 291)

Name: NF17149_low_17
Description: NF17149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17149_low_17
NF17149_low_17
[»] chr7 (2 HSPs)
chr7 (12-291)||(46919575-46919857)
chr7 (133-165)||(1399157-1399189)
[»] chr3 (7 HSPs)
chr3 (234-290)||(7946618-7946675)
chr3 (132-165)||(12043131-12043164)
chr3 (133-165)||(334882-334914)
chr3 (133-165)||(5349523-5349555)
chr3 (133-165)||(8127458-8127490)
chr3 (133-165)||(33771685-33771717)
chr3 (133-165)||(51250267-51250299)
[»] chr6 (2 HSPs)
chr6 (132-162)||(30358331-30358361)
chr6 (133-165)||(13654219-13654251)
[»] chr5 (5 HSPs)
chr5 (234-288)||(28638230-28638284)
chr5 (137-165)||(21308968-21308996)
chr5 (137-165)||(21316881-21316909)
chr5 (248-291)||(33654900-33654944)
chr5 (133-165)||(40445978-40446010)
[»] chr4 (7 HSPs)
chr4 (135-165)||(30380527-30380557)
chr4 (133-165)||(14137045-14137077)
chr4 (133-165)||(14577541-14577573)
chr4 (133-165)||(21465606-21465638)
chr4 (137-165)||(39401002-39401030)
chr4 (133-165)||(43722760-43722792)
chr4 (255-287)||(47490795-47490827)
[»] chr1 (7 HSPs)
chr1 (131-165)||(18398631-18398665)
chr1 (136-165)||(7574152-7574181)
chr1 (133-165)||(31890783-31890815)
chr1 (133-165)||(40693681-40693713)
chr1 (133-165)||(41573303-41573335)
chr1 (133-165)||(49183168-49183200)
chr1 (133-165)||(52267759-52267791)
[»] scaffold0005 (1 HSPs)
scaffold0005 (133-165)||(239802-239834)
[»] chr8 (3 HSPs)
chr8 (133-165)||(6447184-6447216)
chr8 (133-165)||(7553674-7553706)
chr8 (133-165)||(14745153-14745185)
[»] chr2 (3 HSPs)
chr2 (248-291)||(6588307-6588351)
chr2 (133-165)||(41542834-41542866)
chr2 (133-165)||(42778614-42778646)


Alignment Details
Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 12 - 291
Target Start/End: Original strand, 46919575 - 46919857
Alignment:
Q  12 ccaagaatatcgacgaagtaaaatttaattttctaaaattttatcacttatacagtgaaaactaattannnnnnnagattaaatgtaaaatacttagtat 111  Q
    |||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||    
T  46919575 ccaaaaatatcgacaaagtaaaatttaattctctaaaattttatcacttatacagtgaaaactaattatttttttagattaaatgtaaaatacttagtat 46919674  T
Q  112 gattataaacaatgaaatgaatc-----ctcgtgagtttaactcagttggtaaggacaagatctggagttcaaacctcgatcaccacnnnnnnnnnnnnn 206  Q
    |||||||||||||||||||||||      ||||||| ||||||||||||| ||||||||| |||| |||||||||||||||||||||                 
T  46919675 gattataaacaatgaaatgaatcattgattcgtgagcttaactcagttggcaaggacaaggtctgaagttcaaacctcgatcaccac--aacaaaaaaaa 46919772  T
Q  207 caatgaaatcaagnnnnnnnnnncatcaaatgatatttaagaaaatataaaagtcacaaataattctttattttataaaaataat 291  Q
    |||||||||||||          |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  46919773 caatgaaatcaagttttttttttcatcaaatgatatttaagaaaacataaaagtcacaaataattctttatttcataaaaataat 46919857  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 165
Target Start/End: Original strand, 1399157 - 1399189
Alignment:
Q  133 tcctcgtgagtttaactcagttggtaaggacaa 165  Q
    |||||||||||||||||||||||||| ||||||    
T  1399157 tcctcgtgagtttaactcagttggtatggacaa 1399189  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 234 - 290
Target Start/End: Original strand, 7946618 - 7946675
Alignment:
Q  234 aaatgatatttaagaaaatataaaagtc-acaaataattctttattttataaaaataa 290  Q
    |||||||||||   |||| ||||||||| |||||||||||||||||||||||||||||    
T  7946618 aaatgatattttctaaaacataaaagtccacaaataattctttattttataaaaataa 7946675  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 165
Target Start/End: Complemental strand, 12043164 - 12043131
Alignment:
Q  132 atcctcgtgagtttaactcagttggtaaggacaa 165  Q
    ||||||||||| ||||||||||||||||||||||    
T  12043164 atcctcgtgagcttaactcagttggtaaggacaa 12043131  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 165
Target Start/End: Complemental strand, 334914 - 334882
Alignment:
Q  133 tcctcgtgagtttaactcagttggtaaggacaa 165  Q
    |||||||||||||||||||||||||| ||||||    
T  334914 tcctcgtgagtttaactcagttggtatggacaa 334882  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 165
Target Start/End: Original strand, 5349523 - 5349555
Alignment:
Q  133 tcctcgtgagtttaactcagttggtaaggacaa 165  Q
    ||||||||||||||||||| |||||||||||||    
T  5349523 tcctcgtgagtttaactcacttggtaaggacaa 5349555  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 165
Target Start/End: Original strand, 8127458 - 8127490
Alignment:
Q  133 tcctcgtgagtttaactcagttggtaaggacaa 165  Q
    |||||||||| ||||||||||||||||||||||    
T  8127458 tcctcgtgagcttaactcagttggtaaggacaa 8127490  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 165
Target Start/End: Original strand, 33771685 - 33771717
Alignment:
Q  133 tcctcgtgagtttaactcagttggtaaggacaa 165  Q
    |||||||||| ||||||||||||||||||||||    
T  33771685 tcctcgtgagcttaactcagttggtaaggacaa 33771717  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 165
Target Start/End: Complemental strand, 51250299 - 51250267
Alignment:
Q  133 tcctcgtgagtttaactcagttggtaaggacaa 165  Q
    |||||||||| ||||||||||||||||||||||    
T  51250299 tcctcgtgagcttaactcagttggtaaggacaa 51250267  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 162
Target Start/End: Complemental strand, 30358361 - 30358331
Alignment:
Q  132 atcctcgtgagtttaactcagttggtaagga 162  Q
    |||||||||||||||||||||||||||||||    
T  30358361 atcctcgtgagtttaactcagttggtaagga 30358331  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 165
Target Start/End: Original strand, 13654219 - 13654251
Alignment:
Q  133 tcctcgtgagtttaactcagttggtaaggacaa 165  Q
    |||||||||| ||||||||||||||||||||||    
T  13654219 tcctcgtgagcttaactcagttggtaaggacaa 13654251  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 288
Target Start/End: Complemental strand, 28638284 - 28638230
Alignment:
Q  234 aaatgatatttaagaaaatataaaagtcacaaataattctttattttataaaaat 288  Q
    |||||||||||   ||||||||||| | | |||||||||||||||||||||||||    
T  28638284 aaatgatattttcaaaaatataaaattgataaataattctttattttataaaaat 28638230  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 165
Target Start/End: Original strand, 21308968 - 21308996
Alignment:
Q  137 cgtgagtttaactcagttggtaaggacaa 165  Q
    |||||||||||||||||||||||||||||    
T  21308968 cgtgagtttaactcagttggtaaggacaa 21308996  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 165
Target Start/End: Original strand, 21316881 - 21316909
Alignment:
Q  137 cgtgagtttaactcagttggtaaggacaa 165  Q
    |||||||||||||||||||||||||||||    
T  21316881 cgtgagtttaactcagttggtaaggacaa 21316909  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 291
Target Start/End: Complemental strand, 33654944 - 33654900
Alignment:
Q  248 aaaatataaaagtca-caaataattctttattttataaaaataat 291  Q
    ||||||||||||||| ||||||| ||||||||| |||||||||||    
T  33654944 aaaatataaaagtcaacaaataactctttatttcataaaaataat 33654900  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 165
Target Start/End: Original strand, 40445978 - 40446010
Alignment:
Q  133 tcctcgtgagtttaactcagttggtaaggacaa 165  Q
    ||||||||||||||||||||||| |||||||||    
T  40445978 tcctcgtgagtttaactcagttgataaggacaa 40446010  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 165
Target Start/End: Original strand, 30380527 - 30380557
Alignment:
Q  135 ctcgtgagtttaactcagttggtaaggacaa 165  Q
    |||||||||||||||||||||||||||||||    
T  30380527 ctcgtgagtttaactcagttggtaaggacaa 30380557  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 165
Target Start/End: Original strand, 14137045 - 14137077
Alignment:
Q  133 tcctcgtgagtttaactcagttggtaaggacaa 165  Q
    |||||||||| ||||||||||||||||||||||    
T  14137045 tcctcgtgagcttaactcagttggtaaggacaa 14137077  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 165
Target Start/End: Complemental strand, 14577573 - 14577541
Alignment:
Q  133 tcctcgtgagtttaactcagttggtaaggacaa 165  Q
    |||||||||||||| ||||||||||||||||||    
T  14577573 tcctcgtgagtttagctcagttggtaaggacaa 14577541  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 165
Target Start/End: Original strand, 21465606 - 21465638
Alignment:
Q  133 tcctcgtgagtttaactcagttggtaaggacaa 165  Q
    |||||||||||||||||||||| ||||||||||    
T  21465606 tcctcgtgagtttaactcagttagtaaggacaa 21465638  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 165
Target Start/End: Original strand, 39401002 - 39401030
Alignment:
Q  137 cgtgagtttaactcagttggtaaggacaa 165  Q
    |||||||||||||||||||||||||||||    
T  39401002 cgtgagtttaactcagttggtaaggacaa 39401030  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 165
Target Start/End: Original strand, 43722760 - 43722792
Alignment:
Q  133 tcctcgtgagtttaactcagttggtaaggacaa 165  Q
    |||||||||||||||||||||||||| ||||||    
T  43722760 tcctcgtgagtttaactcagttggtatggacaa 43722792  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 287
Target Start/End: Original strand, 47490795 - 47490827
Alignment:
Q  255 aaaagtcacaaataattctttattttataaaaa 287  Q
    |||| ||||||||||||||||||||||||||||    
T  47490795 aaaaatcacaaataattctttattttataaaaa 47490827  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 165
Target Start/End: Original strand, 18398631 - 18398665
Alignment:
Q  131 aatcctcgtgagtttaactcagttggtaaggacaa 165  Q
    ||||||||||||||||| |||||||||||||||||    
T  18398631 aatcctcgtgagtttaattcagttggtaaggacaa 18398665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 165
Target Start/End: Complemental strand, 7574181 - 7574152
Alignment:
Q  136 tcgtgagtttaactcagttggtaaggacaa 165  Q
    ||||||||||||||||||||||||||||||    
T  7574181 tcgtgagtttaactcagttggtaaggacaa 7574152  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 165
Target Start/End: Complemental strand, 31890815 - 31890783
Alignment:
Q  133 tcctcgtgagtttaactcagttggtaaggacaa 165  Q
    |||||||||||||| ||||||||||||||||||    
T  31890815 tcctcgtgagtttagctcagttggtaaggacaa 31890783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 165
Target Start/End: Original strand, 40693681 - 40693713
Alignment:
Q  133 tcctcgtgagtttaactcagttggtaaggacaa 165  Q
    |||||||||||||| ||||||||||||||||||    
T  40693681 tcctcgtgagtttagctcagttggtaaggacaa 40693713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 165
Target Start/End: Complemental strand, 41573335 - 41573303
Alignment:
Q  133 tcctcgtgagtttaactcagttggtaaggacaa 165  Q
    |||||||||||||||||||||||||| ||||||    
T  41573335 tcctcgtgagtttaactcagttggtagggacaa 41573303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 165
Target Start/End: Original strand, 49183168 - 49183200
Alignment:
Q  133 tcctcgtgagtttaactcagttggtaaggacaa 165  Q
    |||||||||||||| ||||||||||||||||||    
T  49183168 tcctcgtgagtttagctcagttggtaaggacaa 49183200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 165
Target Start/End: Original strand, 52267759 - 52267791
Alignment:
Q  133 tcctcgtgagtttaactcagttggtaaggacaa 165  Q
    |||||||||| ||||||||||||||||||||||    
T  52267759 tcctcgtgagcttaactcagttggtaaggacaa 52267791  T

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Target: scaffold0005 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 165
Target Start/End: Original strand, 239802 - 239834
Alignment:
Q  133 tcctcgtgagtttaactcagttggtaaggacaa 165  Q
    |||||||||||||| ||||||||||||||||||    
T  239802 tcctcgtgagtttagctcagttggtaaggacaa 239834  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 165
Target Start/End: Original strand, 6447184 - 6447216
Alignment:
Q  133 tcctcgtgagtttaactcagttggtaaggacaa 165  Q
    |||||||||||||||||||||||||| ||||||    
T  6447184 tcctcgtgagtttaactcagttggtatggacaa 6447216  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 165
Target Start/End: Original strand, 7553674 - 7553706
Alignment:
Q  133 tcctcgtgagtttaactcagttggtaaggacaa 165  Q
    |||||||||||||||||||||||||| ||||||    
T  7553674 tcctcgtgagtttaactcagttggtagggacaa 7553706  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 165
Target Start/End: Original strand, 14745153 - 14745185
Alignment:
Q  133 tcctcgtgagtttaactcagttggtaaggacaa 165  Q
    ||||||||||||||| |||||||||||||||||    
T  14745153 tcctcgtgagtttaaatcagttggtaaggacaa 14745185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 291
Target Start/End: Complemental strand, 6588351 - 6588307
Alignment:
Q  248 aaaatataaaagtc-acaaataattctttattttataaaaataat 291  Q
    ||||||||||| || |||||||||||||||||| |||||||||||    
T  6588351 aaaatataaaactcgacaaataattctttatttcataaaaataat 6588307  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 165
Target Start/End: Complemental strand, 41542866 - 41542834
Alignment:
Q  133 tcctcgtgagtttaactcagttggtaaggacaa 165  Q
    |||||||||| ||||||||||||||||||||||    
T  41542866 tcctcgtgagcttaactcagttggtaaggacaa 41542834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 165
Target Start/End: Original strand, 42778614 - 42778646
Alignment:
Q  133 tcctcgtgagtttaactcagttggtaaggacaa 165  Q
    ||||| |||||||||||||||||||||||||||    
T  42778614 tcctcatgagtttaactcagttggtaaggacaa 42778646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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