View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17149_low_23 (Length: 249)
Name: NF17149_low_23
Description: NF17149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17149_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 32845421 - 32845185
Alignment:
| Q |
1 |
ccaatcttcttcatcactatggtatgaacttgcttacttggaagccaaggaaaaagtgcagaaaggtgacaacatttggctacttggaattggaagtggg |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32845421 |
ccaatcttcttcatcgctatggtatgaacttgcttacttggaagccaaggaaaaagtgcagaaaggtgacaacatttggctacttggaattggaagtggg |
32845322 |
T |
|
| Q |
101 |
actaagtgttgcagtgtagttttgaagtgtaatagaccaaaatttggagagtctaataagggaccatggtctgattgcatccatcaatacccaatatcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32845321 |
actaagtgttgcagtgtagttttgaagtgtaatagaccaaaacttggagagtctaataagggaccatggtctgattgcatccatcaatacccaatatcaa |
32845222 |
T |
|
| Q |
201 |
ctttcaattaataattttacacttgttattatatatt |
237 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
32845221 |
ctttcaattaataattttacacttgttattatatatt |
32845185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 32832140 - 32831904
Alignment:
| Q |
1 |
ccaatcttcttcatcactatggtatgaacttgcttacttggaagccaaggaaaaagtgcagaaaggtgacaacatttggctacttggaattggaagtggg |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32832140 |
ccaatcttcttcatcgctatggtatgaacttgcttacttggaagccaaggaaaaagtgcagaaaggtgacaacatttggctacttggaattggaagtggg |
32832041 |
T |
|
| Q |
101 |
actaagtgttgcagtgtagttttgaagtgtaatagaccaaaatttggagagtctaataagggaccatggtctgattgcatccatcaatacccaatatcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32832040 |
actaagtgttgcagtgtagttttgaagtgtaatagaccaaaacttggagagtctaataagggaccatggtctgattgcatccatcaatacccaatatcaa |
32831941 |
T |
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| Q |
201 |
ctttcaattaataattttacacttgttattatatatt |
237 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||| |
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| T |
32831940 |
ctttcaattgataattttacacttgttattatatatt |
32831904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 17932503 - 17932739
Alignment:
| Q |
1 |
ccaatcttcttcatcactatggtatgaacttgcttacttggaagccaaggaaaaagtgcagaaaggtgacaacatttggctacttggaattggaagtggg |
100 |
Q |
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|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17932503 |
ccaatcttcttcatctctatggtatgaacttgcttacttggaagccaaggaaaaagtgcagaaaggtgacaacatttggctacttggaattggaagtggg |
17932602 |
T |
|
| Q |
101 |
actaagtgttgcagtgtagttttgaagtgtaatagaccaaaatttggagagtctaataagggaccatggtctgattgcatccatcaatacccaatatcaa |
200 |
Q |
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|
|||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17932603 |
tttaagtgttgcagtgtatttttgaagtgtaatagtccaaaacttggagagtctaataagggaccatggtctgattgcatccatcaatacccaatatcaa |
17932702 |
T |
|
| Q |
201 |
ctttcaattaataattttacacttgttattatatatt |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
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|
| T |
17932703 |
ctttcaattaataattttacacttgttattatatatt |
17932739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 2 - 197
Target Start/End: Original strand, 46189032 - 46189227
Alignment:
| Q |
2 |
caatcttcttcatcactatggtatgaacttgcttacttggaagccaaggaaaaagtgcagaaaggtgacaacatttggctacttggaattggaagtggga |
101 |
Q |
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||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||| | ||||||| |||||||||| |
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| T |
46189032 |
caatcttcttcatcattgtggtatgaacttgcttacttggaagccaaggaaaaagtgaagaaaggtgataatgtttggcaagttggaatgggaagtggga |
46189131 |
T |
|
| Q |
102 |
ctaagtgttgcagtgtagttttgaagtgtaatagaccaaaatttggagagtctaataagggaccatggtctgattgcatccatcaatacccaatat |
197 |
Q |
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| |||||||||||||| |||||||||||||||||||||| | |||| |||||| |||||||||||||| ||||||||| |||||||||||||||| |
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| T |
46189132 |
ccaagtgttgcagtgttgttttgaagtgtaatagaccaatacttggtgagtctcataagggaccatggggtgattgcattcatcaatacccaatat |
46189227 |
T |
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