View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17149_low_26 (Length: 235)
Name: NF17149_low_26
Description: NF17149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17149_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 8672787 - 8673007
Alignment:
| Q |
1 |
actccagttaaaagcatgcatatatccacattttctggtgacacaaagtctactgcaacttttgtgcatgactgcaagattttacaatatagtgattaaa |
100 |
Q |
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| T |
8672787 |
actccagttaaaagcatgcatatatccacattttctggtgacacaaagtctactgcaacttttgtgcatgactgcaagattttacaatatagtgattaaa |
8672886 |
T |
|
| Q |
101 |
gttattaactatagattcagtcaaataatcaaaagatatacatgtacttttaaacttaaatttaggtaaagaggattatatgataagagatgtttcacct |
200 |
Q |
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| T |
8672887 |
gttattaactatagattcagtcaaataatcaaaagatatacatgtacttttaaacttaaatttaggtaaagaggattatatgataagagatgtttcacct |
8672986 |
T |
|
| Q |
201 |
tcagatttcgaacttggtgag |
221 |
Q |
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||||||||||||||||||||| |
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| T |
8672987 |
tcagatttcgaacttggtgag |
8673007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 5 - 221
Target Start/End: Original strand, 8719090 - 8719304
Alignment:
| Q |
5 |
cagttaaaagcatgcatatatccacattttctggtgacacaaagtctactgcaacttttgtgcatgactgcaagattttacaatatagtgattaaagtta |
104 |
Q |
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| T |
8719090 |
cagttaaaagcatgcatatatccacattttctggtgacacaaagtctactgcaactttcgtgcatgactgcaagattttacaatatagtgattaaagtta |
8719189 |
T |
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| Q |
105 |
ttaactatagattcagtcaaataatcaaaagatatacatgtacttttaaacttaaatttaggtaaagaggattatatgataagagatgtttcaccttcag |
204 |
Q |
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| T |
8719190 |
ttaactatagattcagtcaaataatcacaagatat--gtgtacttctaaacgtaaatttaggtaaagagcattatatgataagagatgtttcaccttcag |
8719287 |
T |
|
| Q |
205 |
atttcgaacttggtgag |
221 |
Q |
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||||| |||||||||| |
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| T |
8719288 |
atttctgacttggtgag |
8719304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 5 - 221
Target Start/End: Original strand, 8591252 - 8591467
Alignment:
| Q |
5 |
cagttaaaagcatgcatatatccacattttctggtgacacaaagtctactgcaacttttgtgcatgactgcaagattttacaatatagtgattaaagtta |
104 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8591252 |
cagttaaaagcatgcagatatccacattttctggtgacacaaagtctgctgcaattttcgtgcatgactgcaagattttacaatatagtgattagagtta |
8591351 |
T |
|
| Q |
105 |
ttaactatagattcagtcaaataatcaaaagatatacatgtac-ttttaaacttaaatttaggtaaagaggattatatgataagagatgtttcaccttca |
203 |
Q |
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| T |
8591352 |
ctaactatagattcagtcaaataaccacaag--ttacttgtactttttaagcttaaatttaagtcaagagaattatatgataagagatgtttcaccttca |
8591449 |
T |
|
| Q |
204 |
gatttcgaacttggtgag |
221 |
Q |
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|||||| |||||||||| |
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| T |
8591450 |
gatttctgacttggtgag |
8591467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 30 - 131
Target Start/End: Original strand, 5116075 - 5116177
Alignment:
| Q |
30 |
attttctggtgacacaaa-gtctactgcaacttttgtgcatgactgcaagattttacaatatagtgattaaagttattaactatagattcagtcaaataa |
128 |
Q |
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||||||| |||||||||| |||| | ||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||| || |||||||| |
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| T |
5116075 |
attttcttgtgacacaaaagtctgcagcaacttttgtgcatgactgcaagattttacaatatagtatttagagttattaaaaatagatacaatcaaataa |
5116174 |
T |
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| Q |
129 |
tca |
131 |
Q |
| |
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||| |
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| T |
5116175 |
tca |
5116177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 55409959 - 55410009
Alignment:
| Q |
28 |
acattttctggtgacacaaagtctactgcaacttttgtgcatgactgcaag |
78 |
Q |
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||||||||||| ||||| |||||||| ||||| |||||||| ||||||||| |
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| T |
55409959 |
acattttctggggacacgaagtctacagcaacctttgtgcacgactgcaag |
55410009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 23439930 - 23439884
Alignment:
| Q |
175 |
attatatgataagagatgtttcaccttcagatttcgaacttggtgag |
221 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
23439930 |
attatatgataagagatgttacaccttcagatttcgaacttggtgag |
23439884 |
T |
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