View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17149_low_3 (Length: 543)
Name: NF17149_low_3
Description: NF17149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17149_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 433; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 92 - 532
Target Start/End: Original strand, 43548455 - 43548895
Alignment:
| Q |
92 |
gaagtaattaatgaattttaaaatccttggcatatgaaaccttatcttttacttccaaggaggtgatcaaaatgtgcaaatgtgagtaaatttcaaaata |
191 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43548455 |
gaagtaattaatgaatttaaaaatccttggcatatgaaaccttatcttttacttccaaggaggtgatcaaaatgtgcaaatgtgagtaaatttcaaaata |
43548554 |
T |
|
| Q |
192 |
ttactcctctaatacaatctgacaataatgcatggaaacaattcataaagaggatcaagtaagaagtcgacttcatctatctagactctagtattagtgc |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43548555 |
ttactcctctaatacaatctgacaataatgcatggaaacaattcataaagaggatcaagtaagaagtcgacttcatctatctagactctagtattagtgc |
43548654 |
T |
|
| Q |
292 |
attagatttgtctttactgctttggagcgctaattcttaattgtgttgaaacaggagccagttgttccaggttgctttctccgtgccaaagctattggac |
391 |
Q |
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| T |
43548655 |
attagatttgtctttactgctttggagcgctaattcttaattgtgttgaaacaggagccagttgttccaggttgctttctccgtgccaaagctattgggc |
43548754 |
T |
|
| Q |
392 |
tcatgcctatgatcgatcaggtctgtgagacattccattttgaagatagcaataatttctcttctgattattattgatcagccactaattcttatgatgt |
491 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43548755 |
tcatgcctatgatcgatcaggtctgtgagacattccattttgaagatagcaataatttctcttctgattattattgatcagccactaattcttatgatgt |
43548854 |
T |
|
| Q |
492 |
tcagggcgagaaagatgacaagataattgctgtctgtgctg |
532 |
Q |
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| T |
43548855 |
tcagggcgagaaagatgacaagataattgctgtctgtgctg |
43548895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 302 - 531
Target Start/End: Original strand, 50901072 - 50901304
Alignment:
| Q |
302 |
tctttactgctttgg-agcgctaattcttaattgt-gttgaaacagg-agccagttgttccaggttgctttctccgtgccaaagctattggactcatgcc |
398 |
Q |
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||||||||||||||| | |||||| ||||||||| | || |||||| |||| ||| |||||||||||||||||| |||||| ||||||||||||||| | |
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| T |
50901072 |
tctttactgctttgggatggctaatacttaattgttggtggaacagggagccggttcttccaggttgctttctccatgccaa-gctattggactcatgtc |
50901170 |
T |
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| Q |
399 |
tatgatcgatcagg-tctgtgagacattccattttgaagatagcaataatttctcttctgattattattgatcagccactaattcttatgatgttcaggg |
497 |
Q |
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| T |
50901171 |
gatgattgatcaggctatgtgagaccttccattttgtagctagcaataatttctcttttgattattaatgatcaaccgctaattcttatgaaactcaggg |
50901270 |
T |
|
| Q |
498 |
cgagaaagatgacaagataattgctgtctgtgct |
531 |
Q |
| |
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| T |
50901271 |
cgagaaagatgacaagataattgctgtctgtgct |
50901304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 341 - 532
Target Start/End: Original strand, 29368928 - 29369119
Alignment:
| Q |
341 |
aacaggagccagttgttccaggttgctttctccgtgccaaagctattggactcatgcctatgatcgatcaggtctgtgagacattccattttgaagatag |
440 |
Q |
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| T |
29368928 |
aacaggagccagttcttccaggctgctttcttcgtgccaaagctattggtctcatgcccatgattgatcaggtatctgaaacattccctttcccagatgg |
29369027 |
T |
|
| Q |
441 |
caataatttctcttctgattattattgatcagccactaattcttatgatgttcagggcgagaaagatgacaagataattgctgtctgtgctg |
532 |
Q |
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| T |
29369028 |
caataacttctttttttatcattatcgatcaatcactaattcttatgaaattcagggtgagaaagatgacaagatcattgctgtctgtgctg |
29369119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 43548392 - 43548464
Alignment:
| Q |
1 |
caagatgttggtgggtgtcaacattttaacgaatatatttagataatactaatatcttattaagaagtaatta |
73 |
Q |
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| T |
43548392 |
caagatgttggtgggtgtcaacattttaacgaatatatttagataatactaatatcttattaagaagtaatta |
43548464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 172 - 274
Target Start/End: Original strand, 50909815 - 50909917
Alignment:
| Q |
172 |
tgtgagtaaatttcaaaatattactcctctaatacaatctgacaataatgcatggaaacaattcataaagaggatcaagtaagaagtcgacttcatctat |
271 |
Q |
| |
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||||||||||||| ||||||| || |||||||||||| | ||||||||||||| || |||||| |||||||||||||||| | | |||||||||||| |
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| T |
50909815 |
tgtgagtaaatttgaaaatatggctactctaatacaatttagcaataatgcatggtaataattcaaaaagaggatcaagtaatacgatgacttcatctat |
50909914 |
T |
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| Q |
272 |
cta |
274 |
Q |
| |
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||| |
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| T |
50909915 |
cta |
50909917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 152 - 253
Target Start/End: Original strand, 29368751 - 29368851
Alignment:
| Q |
152 |
aggtgatcaaaatgtgcaaatgtgagtaaatttcaaaatattactcctctaatacaatctgacaataatgcatggaaacaattcataaagaggatcaagt |
251 |
Q |
| |
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||||| ||||||||||||||||||||||||||| |||| || || || ||||||||| | |||||||| ||||| |||| |||| ||||||||| |||| |
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| T |
29368751 |
aggtgttcaaaatgtgcaaatgtgagtaaattttaaaa-atggctactgtaatacaatttcacaataatacatggtaacacttcaaaaagaggatgaagt |
29368849 |
T |
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| Q |
252 |
aa |
253 |
Q |
| |
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|| |
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| T |
29368850 |
aa |
29368851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 490 - 530
Target Start/End: Original strand, 50910065 - 50910105
Alignment:
| Q |
490 |
gttcagggcgagaaagatgacaagataattgctgtctgtgc |
530 |
Q |
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| T |
50910065 |
gttcagggcgagaaagatgacaagatattcgctgtctgtgc |
50910105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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