View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17149_low_4 (Length: 540)
Name: NF17149_low_4
Description: NF17149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17149_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 476; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 11 - 525
Target Start/End: Original strand, 55622374 - 55622891
Alignment:
| Q |
11 |
caaagggcaaaaattaccccttaacacagctctaggaaaactgtgctaaagcacctctgtgccctgtgctaaggggttttacacagtcacctaaagaagg |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55622374 |
caaaaggcaaaaattaccccttaacacagctctaggaaaactgtgctaaagcacctctgtgccctgtgctaaggggttttacacagtcacctaaagaagg |
55622473 |
T |
|
| Q |
111 |
aaaaactgtgtatgtgcatatggttattcaacattaaatttagcagccaaatggccaactctaacagcaattttaccctcaaaat---catccctgcaat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||| ||||| |||||| |
|
|
| T |
55622474 |
aaaaactgtgtatgtgcatatggttattcaacattaaatttagcagccaaatggccaactctaacagcaattttactcccataataaacatccttgcaat |
55622573 |
T |
|
| Q |
208 |
tgtatgctttcaagggccttgcttcaaatgtaatggacttgttagttgcaacctcattagttgttctcttgtaagtattgaaccacttagcttgcatgta |
307 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55622574 |
tgtatgctttcaagggtcttgcttcaaatgtaatggacttgttagttgcaacctcattagttgttctcttgtaagtattgaaccacttagcttgcatgta |
55622673 |
T |
|
| Q |
308 |
gctatttcttctccatggaggtacatgcatattcattgttttcatagaatccttaatagcactgcacattatcctcacaacccttttcagctcttccact |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55622674 |
gctatttcttctccatggaggtacatgcatatccattgttttcatagaatccttaatagcactgcacattatcctcacaacccttttcagctcttccact |
55622773 |
T |
|
| Q |
408 |
ttaccaacaaatactaaagggaaaacatcaagtaatgaagtatattgatttgtgggtcgagctatttcaaattcagccataagggatgtttcaacaatgt |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55622774 |
ttaccaacaaatactaaagggaaaacatcaagtaatgaagtatattgatttgtgggtcgagctatttcaaattcagccataagggatgtttcaacaatgt |
55622873 |
T |
|
| Q |
508 |
aacgatttccaccataat |
525 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
55622874 |
aacgatttccaccataat |
55622891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 11 - 525
Target Start/End: Original strand, 55629678 - 55630195
Alignment:
| Q |
11 |
caaagggcaaaaattaccccttaacacagctctaggaaaactgtgctaaagcacctctgtgccctgtgctaaggggttttacacagtcacctaaagaagg |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55629678 |
caaaaggcaaaaattaccccttaacacagctctaggaaaactgtgctaaagcacctctgtgccctgtgctaaggggttttacacagtcacctaaagaagg |
55629777 |
T |
|
| Q |
111 |
aaaaactgtgtatgtgcatatggttattcaacattaaatttagcagccaaatggccaactctaacagcaattttaccctcaaaat---catccctgcaat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||| ||||| |||||| |
|
|
| T |
55629778 |
aaaaactgtgtatgtgcatatggttattcaacattaaatttagcagccaaatggccaactctaacagcaattttactcccataataaacatccttgcaat |
55629877 |
T |
|
| Q |
208 |
tgtatgctttcaagggccttgcttcaaatgtaatggacttgttagttgcaacctcattagttgttctcttgtaagtattgaaccacttagcttgcatgta |
307 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55629878 |
tgtatgctttcaagggtcttgcttcaaatgtaatggacttgttagttgcaacctcattagttgttctcttgtaagtattgaaccacttagcttgcatgta |
55629977 |
T |
|
| Q |
308 |
gctatttcttctccatggaggtacatgcatattcattgttttcatagaatccttaatagcactgcacattatcctcacaacccttttcagctcttccact |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55629978 |
gctatttcttctccatggaggtacatgcatatccattgttttcatagaatccttaatagcactgcacattatcctcacaacccttttcagctcttccact |
55630077 |
T |
|
| Q |
408 |
ttaccaacaaatactaaagggaaaacatcaagtaatgaagtatattgatttgtgggtcgagctatttcaaattcagccataagggatgtttcaacaatgt |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55630078 |
ttaccaacaaatactaaagggaaaacatcaagtaatgaagtatattgatttgtgggtcgagctatttcaaattcagccataagggatgtttcaacaatgt |
55630177 |
T |
|
| Q |
508 |
aacgatttccaccataat |
525 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
55630178 |
aacgatttccaccataat |
55630195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 27 - 525
Target Start/End: Original strand, 55615086 - 55615587
Alignment:
| Q |
27 |
ccccttaacacagctctaggaaaactgtgctaaagcacctctgtgccctgtgctaaggggttttacacagtcacctaaagaaggaaaaactgtgtatgtg |
126 |
Q |
| |
|
|||| ||||||| | ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55615086 |
ccccataacacatcactaggaaaactgtgcagaaacacctctgtgccctgtgctaaggggttttacacagtcacctaaagaaggaaaaactgtgtatgtg |
55615185 |
T |
|
| Q |
127 |
catatggttattcaacattaaatttagcagccaaatggccaactctaacagcaattttaccctcaaaat---catccctgcaattgtatgctttcaaggg |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||| ||||| |||||||||||||||||||||| |
|
|
| T |
55615186 |
catatggttattcaacattaaatttagcagccaaatggccaactctaacagcaattttactcccataataaacatccttgcaattgtatgctttcaaggg |
55615285 |
T |
|
| Q |
224 |
ccttgcttcaaatgtaatggacttgttagttgcaacctcattagttgttctcttgtaagtattgaaccacttagcttgcatgtagctatttcttctccat |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55615286 |
tcttgcttcaaatgtaatggacttgttagttgcaacctcattagttgttctcttgtaagtattgaaccacttagcttgcatgtagctatttcttctccat |
55615385 |
T |
|
| Q |
324 |
ggaggtacatgcatattcattgttttcatagaatccttaatagcactgcacattatcctcacaacccttttcagctcttccactttaccaacaaatacta |
423 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55615386 |
ggaggtacatgcatatccattgttttcatagaatccttaatagcactgcacattatcctcacaacccttttcagctcttccactttaccaacaaatacta |
55615485 |
T |
|
| Q |
424 |
aagggaaaacatcaagtaatgaagtatattgatttgtgggtcgagctatttcaaattcagccataagggatgtttcaacaatgtaacgatttccaccata |
523 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55615486 |
aagggaaaacatcaagtaatgaagtatattgatttgtgggtcgagctatttcaaattcagccataagggatgtttcaacaatgtaacgatttccaccata |
55615585 |
T |
|
| Q |
524 |
at |
525 |
Q |
| |
|
|| |
|
|
| T |
55615586 |
at |
55615587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 136; Significance: 1e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 27 - 186
Target Start/End: Complemental strand, 16480287 - 16480128
Alignment:
| Q |
27 |
ccccttaacacagctctaggaaaactgtgctaaagcacctctgtgccctgtgctaaggggttttacacagtcacctaaagaaggaaaaactgtgtatgtg |
126 |
Q |
| |
|
|||| ||||||| | ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16480287 |
ccccataacacatcactaggaaaactgtgcagaaacacctctgtgccctgtgctaaggggttttacacagtcacctaaagaaggaaaaactgtgtatgtg |
16480188 |
T |
|
| Q |
127 |
catatggttattcaacattaaatttagcagccaaatggccaactctaacagcaattttac |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16480187 |
catatggttattcaacattaaatttagcagccaaatggccaactctaacagcaattttac |
16480128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University