View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17149_low_6 (Length: 458)

Name: NF17149_low_6
Description: NF17149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17149_low_6
NF17149_low_6
[»] chr8 (3 HSPs)
chr8 (16-446)||(42476175-42476607)
chr8 (212-253)||(26051954-26051995)
chr8 (356-411)||(28733252-28733307)
[»] chr2 (2 HSPs)
chr2 (16-446)||(33522334-33522765)
chr2 (180-260)||(23757891-23757971)
[»] chr3 (3 HSPs)
chr3 (26-232)||(32862248-32862454)
chr3 (306-446)||(32862060-32862200)
chr3 (187-260)||(50302005-50302070)
[»] chr1 (1 HSPs)
chr1 (356-446)||(3324893-3324983)
[»] chr4 (5 HSPs)
chr4 (356-445)||(38372650-38372739)
chr4 (356-447)||(39264725-39264816)
chr4 (20-75)||(48811706-48811761)
chr4 (356-445)||(2737717-2737806)
chr4 (222-259)||(48811440-48811478)
[»] chr5 (1 HSPs)
chr5 (228-259)||(37344726-37344757)
[»] chr6 (1 HSPs)
chr6 (365-445)||(23112044-23112124)


Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 16 - 446
Target Start/End: Original strand, 42476175 - 42476607
Alignment:
Q  16 caatatacccaaaa-taaaactcaaaa-aacatcatacccataaactaatttataccttaggaatcgcagaagaggtgaaagtgagaatcgcagaaaagt 113  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  42476175 caatatacccaaaagtaaaactcaaaaaaacatcatacccataaactaatttataccttaggaatcgcagaagaggtgagagtgagaatcgcagaaaagt 42476274  T
Q  114 ccagaagaagaagagtgagaatcgcaaaatcaatgaggtcacatttcggttccgttcatgtgagctagcttcgattgagtgagaatcagagaagaagagg 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42476275 ccagaagaagaagagtgagaatcgcaaaatcaatgaggtcacatttcggttccgttcatgtgagctggcttcgattgagtgagaatcagagaagaagagg 42476374  T
Q  214 tgaattggattgaaattgaaatgaaattagggtttagaaaagggtttggttcatgatttttgtgtgaaaattttccagaatagtgagaactgaattgaga 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42476375 tgaattggattgaaattgaaatgaaattagggtttagaaaagggtttggttcatgatttttgtgtgaaaattttccagaatagtgagaactgaattgaga 42476474  T
Q  314 tgtgatggttcagttcggttcacaacaattaaccgagtttaataaccgtttggttcacttagtgaattgtttttaaaataaccgttcagttcaataacta 413  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||    
T  42476475 tgtaatggttcagttcggttcacaacaattaaccgagtttaataaccgtttgattcagttagtgaattgtttttaaaataacggttcagttcaataacta 42476574  T
Q  414 atacaatagttcaattaaattttgtttggttca 446  Q
    ||||||||||| | |||| ||| ||||||||||    
T  42476575 atacaatagtttagttaattttagtttggttca 42476607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 212 - 253
Target Start/End: Complemental strand, 26051995 - 26051954
Alignment:
Q  212 ggtgaattggattgaaattgaaatgaaattagggtttagaaa 253  Q
    |||||||| ||||||| |||||||||||||||||||||||||    
T  26051995 ggtgaatttgattgaatttgaaatgaaattagggtttagaaa 26051954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 411
Target Start/End: Complemental strand, 28733307 - 28733252
Alignment:
Q  356 taaccgtttggttcacttagtgaattgtttttaaaataaccgttcagttcaataac 411  Q
    ||||||||||||||| ||| |||| ||||||||||||||| |||| ||| ||||||    
T  28733307 taaccgtttggttcagttaatgaactgtttttaaaataacggttctgtttaataac 28733252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 16 - 446
Target Start/End: Complemental strand, 33522765 - 33522334
Alignment:
Q  16 caatatacccaaaa-taaaactcaaaaaacatcatacccataaactaatttataccttaggaatcgcagaagaggtgaaagtgagaatcgcagaaaagtc 114  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33522765 caatatacccaaaaatgaaactcaaaaaacatcatacccataaactaatttataccttaggaatcgcagaagaggtgatagtgagaatcgcagaaaagtc 33522666  T
Q  115 cagaagaagaagagtgagaatcgcaaaatcaatgaggtcacatttcggttccgttcatgtgagctagcttcgattgagtgagaatcagagaagaagaggt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33522665 cagaagaagaagagtgagaatcgcaaaatcaatgaggtcacatttcggttccgttcatgtgagctagcttcgattgagtgagaatcagagaagaagaggt 33522566  T
Q  215 gaattggattgaaattgaaatgaaattagggtttagaaaagggtttggttcatgatttttgtgtgaaaattttccagaatagtgagaactgaattgagat 314  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33522565 gaattggattgaaattgaaatgaaagtagggtttagaaaagggtttggttcatgatttttgtgtgaaaattttccagaatagtgagaactgaattgagat 33522466  T
Q  315 gtgatggttcagttcggttcacaacaattaaccgagtttaataaccgtttggttcacttagtgaattgtttttaaaataaccgttcagttcaataactaa 414  Q
    || |||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||| |    
T  33522465 gtaatggttaagttcggttcacaacaattaaccgagtttaataaccgtttggtttagttagtgaattgtttttaaaataacggttcagttcaataactca 33522366  T
Q  415 tacaatagttcaattaaattttgtttggttca 446  Q
    |||||||||||| |||| ||| |||| |||||    
T  33522365 tacaatagttcagttaattttagtttagttca 33522334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 180 - 260
Target Start/End: Complemental strand, 23757971 - 23757891
Alignment:
Q  180 agcttcgattgagtgagaatcagagaagaagaggtgaattggattgaaattgaaatgaaattagggtttagaaaagggttt 260  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  23757971 agcttcgattgagtgagaatcagagaagaagaggtggattagattgaaattgaaatgaaattagggtttagaaaagggttt 23757891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 26 - 232
Target Start/End: Complemental strand, 32862454 - 32862248
Alignment:
Q  26 aaaataaaactcaaaaaacatcatacccataaactaatttataccttaggaatcgcagaagaggtgaaagtgagaatcgcagaaaagtccagaagaagaa 125  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  32862454 aaaacaaaactcaaaaaacatcatacccataaactaatttataccttaggaatcgcagaagaggtgagagtgagaatcgcagaaaagtccagaagaagaa 32862355  T
Q  126 gagtgagaatcgcaaaatcaatgaggtcacatttcggttccgttcatgtgagctagcttcgattgagtgagaatcagagaagaagaggtgaattggattg 225  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  32862354 gagtgagaatcgcaaaatcaatgaggtcaaatttcggttccgttcatatgagctagcttcaattgagtgagaatcagagaagaagaggtgaattggattg 32862255  T
Q  226 aaattga 232  Q
    |||||||    
T  32862254 aaattga 32862248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 306 - 446
Target Start/End: Complemental strand, 32862200 - 32862060
Alignment:
Q  306 aattgagatgtgatggttcagttcggttcacaacaattaaccgagtttaataaccgtttggttcacttagtgaattgtttttaaaataaccgttcagttc 405  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||  ||||    
T  32862200 aattgagatgtaatggttcagttcggttcacaacaattaaccgagtttaataaccgttcggttcagttagtgaattgtttttaaaataacggtttggttc 32862101  T
Q  406 aataactaatacaatagttcaattaaattttgtttggttca 446  Q
    ||||| |||| ||||  |||| |||| ||| ||||||||||    
T  32862100 aataaataatgcaatgattcagttaattttagtttggttca 32862060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 187 - 260
Target Start/End: Complemental strand, 50302070 - 50302005
Alignment:
Q  187 attgagtgagaatcagagaagaagaggtgaattggattgaaattgaaatgaaattagggtttagaaaagggttt 260  Q
    |||||||||||||||||||||||||||        || ||||||||||||||||||||||||||||||||||||    
T  50302070 attgagtgagaatcagagaagaagagg--------atagaaattgaaatgaaattagggtttagaaaagggttt 50302005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 356 - 446
Target Start/End: Original strand, 3324893 - 3324983
Alignment:
Q  356 taaccgtttggttcacttagtgaattgtttttaaaataaccgttcagttcaataactaatacaatagttcaattaaattttgtttggttca 446  Q
    ||||||||||||||| ||| |||||||||||||||||||| |||| ||| |||||| |||  ||| ||||| |||| ||| ||||||||||    
T  3324893 taaccgtttggttcagttaatgaattgtttttaaaataacggttcggtttaataaccaatgtaatggttcagttaattttagtttggttca 3324983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 356 - 445
Target Start/End: Original strand, 38372650 - 38372739
Alignment:
Q  356 taaccgtttggttcacttagtgaattgtttttaaaataaccgttcagttcaataactaatacaatagttcaattaaattttgtttggttc 445  Q
    |||||| | |||||| ||| |||| ||||||||||||||| |||| |||||||||| ||| |||||||||| |||| ||| |||| ||||    
T  38372650 taaccgctcggttcagttaatgaactgtttttaaaataactgttcggttcaataaccaatgcaatagttcagttaattttagtttagttc 38372739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 356 - 447
Target Start/End: Complemental strand, 39264816 - 39264725
Alignment:
Q  356 taaccgtttggttcacttagtgaattgtttttaaaataaccgttcagttcaataactaatacaatagttcaattaaattttgtttggttcat 447  Q
    |||||||| |||||| ||| |||| ||||||||||||||  ||||||||||||||| |||  ||| ||||  |||| ||| |||||||||||    
T  39264816 taaccgttcggttcagttaatgaactgtttttaaaataatggttcagttcaataaccaatgtaatggttcggttaattttagtttggttcat 39264725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 48811761 - 48811706
Alignment:
Q  20 atacccaaaataaaactcaaaaaacatcatacccataaactaatttataccttagg 75  Q
    ||||| |||| ||||||||||| | ||||||||||||||||||||| |||||||||    
T  48811761 ataccaaaaacaaaactcaaaacaaatcatacccataaactaatttgtaccttagg 48811706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 356 - 445
Target Start/End: Original strand, 2737717 - 2737806
Alignment:
Q  356 taaccgtttggttcacttagtgaattgtttttaaaataaccgttcagttcaataactaatacaatagttcaattaaattttgtttggttc 445  Q
    |||||||| |||||| ||| ||| |||||||||||||||| |||| |||||||||| |||  ||| ||||| |||| |||  ||||||||    
T  2737717 taaccgttcggttcagttaatgatttgtttttaaaataacggttcggttcaataaccaatgtaatggttcagttaattttaatttggttc 2737806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 259
Target Start/End: Complemental strand, 48811478 - 48811440
Alignment:
Q  222 attgaaattgaaat-gaaattagggtttagaaaagggtt 259  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  48811478 attgaaattgaaattgaaattagggtttagaaaagggtt 48811440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 259
Target Start/End: Complemental strand, 37344757 - 37344726
Alignment:
Q  228 attgaaatgaaattagggtttagaaaagggtt 259  Q
    ||||||||||||||||||||||||||||||||    
T  37344757 attgaaatgaaattagggtttagaaaagggtt 37344726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 445
Target Start/End: Original strand, 23112044 - 23112124
Alignment:
Q  365 ggttcacttagtgaattgtttttaaaataaccgttcagttcaataactaatacaatagttcaattaaattttgtttggttc 445  Q
    |||||| ||| |||| ||||||||||||||| |||| |||||||||| | |  ||| ||| |||||| ||| |||||||||    
T  23112044 ggttcaattaatgaactgtttttaaaataacggttcggttcaataaccactgtaatggtttaattaattttcgtttggttc 23112124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University