View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17149_low_8 (Length: 397)
Name: NF17149_low_8
Description: NF17149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17149_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 14673102 - 14673365
Alignment:
| Q |
18 |
cttttatagaatattttgatcgaaagttgaaacctaactcccaagtctacaaaagctcttgttatatactctttgtttgaacaattcctgaggctctgaa |
117 |
Q |
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| T |
14673102 |
cttttatagaatattttgatcgaaagttgaaacctaactcccaagtctactgaagctcttgttatatacactttgtttgaacaattcctgaagctctgaa |
14673201 |
T |
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| Q |
118 |
ggcatattaaagagtactttatcatggtagt------ctaaagaggatggttctaaattgtaattgagcctgagattactatagtataataatttattta |
211 |
Q |
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| T |
14673202 |
ggcatattaaagagtagtttatcatggtagtaaagcactaaagaggatgattctaaattgtgattgagcctgagattactatagtataataatttattta |
14673301 |
T |
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| Q |
212 |
aaccacaatttccatgtatttggaagatttgaaaaccaatgcaaacaaaacattattatactat |
275 |
Q |
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| T |
14673302 |
aaccacaatttccatgtatttggaagatttgaaaaccaatgcaaacaaaacattattatactat |
14673365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 14678480 - 14678743
Alignment:
| Q |
18 |
cttttatagaatattttgatcgaaagttgaaacctaactcccaagtctacaaaagctcttgttatatactctttgtttgaacaattcctgaggctctgaa |
117 |
Q |
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| T |
14678480 |
cttttatagaatattttgatcgaaagttgaaacctaactcccaagtctactgaagctcttgttatatacactttgtttgaacaattcctgaagctctgaa |
14678579 |
T |
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| Q |
118 |
ggcatattaaagagtactttatcatggtagt------ctaaagaggatggttctaaattgtaattgagcctgagattactatagtataataatttattta |
211 |
Q |
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| T |
14678580 |
ggcatattaaagagtagtttatcatggtagtaaagcactaaagaggatgattctaaattgtgattgagcctgagattactatagtataataatttattta |
14678679 |
T |
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| Q |
212 |
aaccacaatttccatgtatttggaagatttgaaaaccaatgcaaacaaaacattattatactat |
275 |
Q |
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| T |
14678680 |
aaccacaatttccatgtatttggaagatttgaaaaccaatgcaaacaaaacattattatactat |
14678743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 281 - 397
Target Start/End: Original strand, 14673415 - 14673532
Alignment:
| Q |
281 |
ttattttgactttaaaccccatgt-caagtatttccaagatttgaaaacctatgcaaacaaaatatatatacacacacacattagtcttattttgacttt |
379 |
Q |
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||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
14673415 |
ttattgtgactttaaaccccatttgcaagtatttccaagatttgaaaacctatgcaaacaaaatatatatacacacacacgttagtcttattttgacttt |
14673514 |
T |
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| Q |
380 |
tctcattactaacagtat |
397 |
Q |
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| T |
14673515 |
tctcattactaacagtat |
14673532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 281 - 397
Target Start/End: Original strand, 14678793 - 14678910
Alignment:
| Q |
281 |
ttattttgactttaaaccccatgt-caagtatttccaagatttgaaaacctatgcaaacaaaatatatatacacacacacattagtcttattttgacttt |
379 |
Q |
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||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
14678793 |
ttattgtgactttaaaccccatttgcaagtatttccaagatttgaaaacctatgcaaacaaaatatatatacacacacacgttagtcttattttgacttt |
14678892 |
T |
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| Q |
380 |
tctcattactaacagtat |
397 |
Q |
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|||||||||||||||||| |
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| T |
14678893 |
tctcattactaacagtat |
14678910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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