View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1714_high_1 (Length: 743)
Name: NF1714_high_1
Description: NF1714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1714_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 587; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 12 - 695
Target Start/End: Complemental strand, 6214770 - 6214087
Alignment:
| Q |
12 |
tatactatactatactactaattatgttatagtatttcctgaattaatgtgtctaatgctctttttcagtgatctgagttggacagatagtccagcaagt |
111 |
Q |
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| T |
6214770 |
tatactatactatactactaattatgttatagtatttcctgaattaatgtgtctaatggtctttttcagtgatctgagttggacagatagtccagcaagt |
6214671 |
T |
|
| Q |
112 |
attctaccaactataaatggattaatatcaagtggtataagcatttggatgtacaggtaataaagtttataatgtaatatcacatcaaagacattatcaa |
211 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6214670 |
attctgccaactataaatggattaatatcaagtggtataagcatttggatgtacaggtaataaagtttataatgtaatatcacatcaaagacattatcaa |
6214571 |
T |
|
| Q |
212 |
tatcactttctttatatgtaacattgcttgtttttgttattatttaataataatgcagtggagatatagatggacgtgttcccataacctcaacaaagta |
311 |
Q |
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||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
6214570 |
tatcactttctttatgtgtaacaatgcttgtttttgttattatttaataataatgcagtggagatatagatggacgtgttcccataatctcaacaaagta |
6214471 |
T |
|
| Q |
312 |
ttcaataaattccctaaaactacctgtacatacagcatggcgtccatggtacactggaaaagaggtaaagaaacattaatatatatcactattacaatat |
411 |
Q |
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||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6214470 |
ttcaataaattccttaaaactacatgtacgtacagcatggcgtccatggtacactggaaaagaggtaaagaaacattaatatatatcactattacaatat |
6214371 |
T |
|
| Q |
412 |
atactaattaagaactttaagccacttatagataacctactacattattatatatgcaggttggaggatatgtgattggttacaaagggctcacactagt |
511 |
Q |
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| T |
6214370 |
atactaattaagaactttaagccacttatagataacctactacattattatatatgcaggttggagggtatgtgattggttacaaagggctcacactaat |
6214271 |
T |
|
| Q |
512 |
cactgtaagaggagctggacacatggttccaagtgaccaaccataccgagcactaaccatgatctcatctttccttcttggacaacttcctcctcaattn |
611 |
Q |
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|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
6214270 |
cactgtaagaggagctgggcacatggttccaactgaccaaccataccgagcactaaccgtgatctcatctttccttcttggacaacttcctcctcaatta |
6214171 |
T |
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| Q |
612 |
nnnnnntcttaagtctattcagtgtatcaataaaatttatgtgaaaaatttacaataattcatcaaaatatgtgtgctccattt |
695 |
Q |
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| | ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
6214170 |
aaatcttaattagtctattcagtgtatcaataaaatgtatgtgaacaatttacaataattcatcaaaatatgtgtgctctattt |
6214087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 180; E-Value: 8e-97
Query Start/End: Original strand, 35 - 381
Target Start/End: Complemental strand, 6177239 - 6176895
Alignment:
| Q |
35 |
atgttatagtatttcctgaattaatgtgtctaatgctctttttcagtgatctgagttggacagatagtccagcaagtattctaccaactataaatggatt |
134 |
Q |
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||||| || |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6177239 |
atgttgtactatttcctgaatcaatgtgtctaatggtctttttcagtgatctgagttggacagatagtccagcaagtattctaccaactataaatggatt |
6177140 |
T |
|
| Q |
135 |
aatatcaagtggtataagcatttggatgtacaggta--ataaagtttataa--tgtaatatcacatcaa----agacattatcaatatcactttctttat |
226 |
Q |
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||||||||||||||||||||| ||||| |||||||| ||| | ||||||| || | ||||||||| ||| |||||||| | |||||| |
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| T |
6177139 |
aatatcaagtggtataagcatatggatatacaggtatgatatactttataaattgatctgtcacatcaaaaatagatattatcaa-------tgctttat |
6177047 |
T |
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| Q |
227 |
atgtaacattgcttgtttttgttattatttaataataatgcagtggagatatagatggacgtgttcccataacctcaacaaagtattcaataaattccct |
326 |
Q |
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| T |
6177046 |
gtctaacattactttgttttg---ttatctaataataatgcagtggagatatagatggacgtgttcctataacctcaacaaagtattcaataaattcctt |
6176950 |
T |
|
| Q |
327 |
aaaactacctgtacatacagcatggcgtccatggtacactggaaaagaggtaaag |
381 |
Q |
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|||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
6176949 |
aaaactgcctgtgcatacagcatggcgtccatggtacactggaaaagaggtaaag |
6176895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 175; E-Value: 8e-94
Query Start/End: Original strand, 463 - 704
Target Start/End: Complemental strand, 6206569 - 6206319
Alignment:
| Q |
463 |
atatgcaggttggaggatatgtgattggttacaaagggctcacactagtcactgtaagaggagctggacacatggttccaagtgaccaaccataccgagc |
562 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
6206569 |
atatgcaggttggagggtatgtgattggttacaaagggctcacactagtcactgtaagaggagctggacacatggttccaactgaccaaccataccgagc |
6206470 |
T |
|
| Q |
563 |
actaaccatgatctcatctttccttcttggacaacttcctcctcaattnnnnnnntcttaagtctattcagtgtatcaataaaatttatgtgaaaaatt- |
661 |
Q |
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| T |
6206469 |
actaaccatgatctcatctttccttcttggacaacttcctcctcaatt---aaaatcttaagtctattcagtgtatcaataaaatttatgtgaaaaattt |
6206373 |
T |
|
| Q |
662 |
-----------tacaataattcatcaaaatatgtgtgctccatttctaaattat |
704 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
6206372 |
gacgagtttcatacaataattcatcaaaatatgtgtgctctatttctaaattat |
6206319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 463 - 610
Target Start/End: Complemental strand, 6176756 - 6176609
Alignment:
| Q |
463 |
atatgcaggttggaggatatgtgattggttacaaagggctcacactagtcactgtaagaggagctggacacatggttccaagtgaccaaccataccgagc |
562 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| || ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6176756 |
atatgcaggttggaggatatgtgattggttacaaagggctcgcacttgttactgttagaggagctggacacatggttccaagtgaccaaccataccgagc |
6176657 |
T |
|
| Q |
563 |
actaaccatgatctcatctttccttcttggacaacttcctcctcaatt |
610 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6176656 |
actaaccatgatctcatctttccttcttggacaacttcctcctcaatt |
6176609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 259 - 380
Target Start/End: Complemental strand, 6206827 - 6206706
Alignment:
| Q |
259 |
taataatgcagtggagatatagatggacgtgttcccataacctcaacaaagtattcaataaattccctaaaactacctgtacatacagcatggcgtccat |
358 |
Q |
| |
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|||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||| |
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| T |
6206827 |
taataatgcagtggtgatttagatgggcgtgttcccataacctcaacaaagtattcaataaattccttaaaactgcctgtgcatacagcatggcgtccat |
6206728 |
T |
|
| Q |
359 |
ggtacactggaaaagaggtaaa |
380 |
Q |
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|||||||||||||||||||||| |
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| T |
6206727 |
ggtacactggaaaagaggtaaa |
6206706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 61 - 170
Target Start/End: Complemental strand, 6207025 - 6206916
Alignment:
| Q |
61 |
tgtctaatgctctttttcagtgatctgagttggacagatagtccagcaagtattctaccaactataaatggattaatatcaagtggtataagcatttgga |
160 |
Q |
| |
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|||||||||||||||||||||| | || ||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
6207025 |
tgtctaatgctctttttcagtggtgtgggttggacagatagtccaactagtattctaccaactataaatcagttaatatcaagtggtataagcatatgga |
6206926 |
T |
|
| Q |
161 |
tgtacaggta |
170 |
Q |
| |
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| |||||||| |
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|
| T |
6206925 |
tatacaggta |
6206916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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