View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1714_high_10 (Length: 427)
Name: NF1714_high_10
Description: NF1714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1714_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 16 - 417
Target Start/End: Original strand, 35597686 - 35598075
Alignment:
| Q |
16 |
agtttaactcagttgataaaaataatacattatatacataaggttcgtggttcaaactccgaccatcgtatcatatacctataaagttagcaaaaagcaa |
115 |
Q |
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| T |
35597686 |
agtttaactcagttggtaaaaataacacattatatatataagattcgtggttcaaactccgaccatcgta---------------gttagcaaaaaacaa |
35597770 |
T |
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| Q |
116 |
agattaatacacaaaaattccattatgagtaggaccacatgtaccatgtgaatcttaagagtaaattaaacttttttactactaccataacctacttttt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35597771 |
agattaatacacaaaaattccattatgagtaggaccacatgtaccatgtgaatcttaagagtaaattaaacttttttactactaccataacctacttttt |
35597870 |
T |
|
| Q |
216 |
aaagaaggattaatgaaatcagcagcacatatatagagacctcccacctttgatca----taatgttttctctcacccactactttctcttcctggtgat |
311 |
Q |
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| T |
35597871 |
aaagaaggattaatgaaatcagcagcacatatatagagacctcccacctttgatcataattaatgttttctctcacccactactttctcttcctggtgat |
35597970 |
T |
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| Q |
312 |
cagtcactagatctcaccacactactcacttggctggtatgtagaatcattaatctcnnnnnnnctctctttcctttgttccctttattattattgttgt |
411 |
Q |
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| T |
35597971 |
cagtcactagatctcaccacactactcacttggctggtatgtagaatcattaatctc-ttttttctctctttcctttgttccctttatgattattgttgt |
35598069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 35527923 - 35527965
Alignment:
| Q |
18 |
tttaactcagttgataaaaataatacattatatacataaggtt |
60 |
Q |
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| T |
35527923 |
tttaactcagttgataaaaataatgcataatatatataaggtt |
35527965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 2563935 - 2563988
Alignment:
| Q |
19 |
ttaactcagttgataaaaataatacattatatacataaggttcgtggttcaaac |
72 |
Q |
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| T |
2563935 |
ttaactcagttgataaaaataatgaataatatatgtaaggttcgaggttcaaac |
2563988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 56096210 - 56096266
Alignment:
| Q |
19 |
ttaactcagttgataaaaataatacattatatacataaggttcgtggttcaaactcc |
75 |
Q |
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| T |
56096210 |
ttaactcagttgataaggacaatgcataatatatgtaaggttcgtggttcaaactcc |
56096266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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