View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1714_high_11 (Length: 422)
Name: NF1714_high_11
Description: NF1714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1714_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 45427851 - 45428256
Alignment:
| Q |
1 |
ttgaacacatttatgacatgaatcatgataaaatgttaaaaactttatggtagaaacatagnnnnnnnccattccgggactcttagctcactgttaagat |
100 |
Q |
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| T |
45427851 |
ttgaacacatttatgacatgaatcatgataaaatgttaaaaactttatggtagaaacatagaaaaaaaccattccgggactcttagctcactgttaagat |
45427950 |
T |
|
| Q |
101 |
tataagtcaactggaccacaacttgataccttaatactataaagaagtctttgcagtaagtctatgcatattagtccacaatttgagtccaaggatttac |
200 |
Q |
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| T |
45427951 |
tataagtcaactggaccacaacttgataccttaatactataaagaagtctttgcagtaagtctataaatattagtccacaatttgagtccaaggatttac |
45428050 |
T |
|
| Q |
201 |
ttaaagttgcacgatagggatataaatagttaatgacaaaaaacatcaatatttgtaggttcgttcagtttacttnnnnnnnnnnnnntatatcttgacc |
300 |
Q |
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| T |
45428051 |
ttaaagttgcacgatagggatataaatagttaatgacaaaaaacatcaatatttgtaggttcgttcagtttacttaaaaacgaaaaaatatatcttgacc |
45428150 |
T |
|
| Q |
301 |
atatttgttttgctatttataggggaagattgatatacatggggaggccagatgcacttcacactcacctttcgggatttggaaggcctgtacctgatgg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45428151 |
atatttgttttgctatttataggggaagattgatatacatggggaggccagatgcacttcacactcacctttcgggatttggaaggcctgtacctgatgg |
45428250 |
T |
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| Q |
401 |
agaaaa |
406 |
Q |
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|||||| |
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| T |
45428251 |
agaaaa |
45428256 |
T |
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