View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1714_high_15 (Length: 394)
Name: NF1714_high_15
Description: NF1714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1714_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 15 - 379
Target Start/End: Complemental strand, 33103796 - 33103409
Alignment:
| Q |
15 |
catcagacagtatggagattgatttctctattattttaggcatatgcacatgccacctacaatcaaaattaataatcatcaaaccaaacttatataaaaa |
114 |
Q |
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| T |
33103796 |
catcagacagtatggagattgatttctctattattttaggcatatgcacatgccacctacaatcaaaattaataatcataaaaccaaacttatataaaaa |
33103697 |
T |
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| Q |
115 |
ctctacaggaatcactagtagaagt---------------caaaaagtcaaaaa--------agcaacttaaagtaatcgattttgcggtcaattaaata |
191 |
Q |
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| T |
33103696 |
ctctacaggaatcactagtagtagtagtaaacagttactgctagaagtcaaaaagtcaaaaaagcaacttaaagtaatcgattttgcggtcaattaatta |
33103597 |
T |
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| Q |
192 |
tgattttgactttaatttacctaaatgccacaagagaccaaattagaccaatgaggctggagtacgtgtttgggttacggataagcttccgccaaaccat |
291 |
Q |
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| T |
33103596 |
tgattttgactttaatttacctaaatgccacaagagaccaaattagaccaatgaggctggagtacgtgtttgggttacggataagcttccgccaaaccat |
33103497 |
T |
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| Q |
292 |
gatcagaatgagacgggtcataacacttgccggaggcatatgtttcacggtggctgttgggtgtagctccgccgttgagctggatcct |
379 |
Q |
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| T |
33103496 |
gatcagaatgagacgggtcataacacttgccggaggcatgtgtttcacggtggctgttgggtgtagctccgccgttgagctggatcct |
33103409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 209 - 330
Target Start/End: Original strand, 10837282 - 10837403
Alignment:
| Q |
209 |
tacctaaatgccacaagagaccaaattagaccaatgaggctggagtacgtgtttgggttacggataagcttccgccaaaccatgatcagaatgagacggg |
308 |
Q |
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| T |
10837282 |
tacctaaaggcaacaagggaccaaataagaccaatgagacttgaataagtgtttggattacggataagcttcctccaaaccataatgagtatgagacgtg |
10837381 |
T |
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| Q |
309 |
tcataacacttgccggaggcat |
330 |
Q |
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|||| || || ||||||||||| |
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| T |
10837382 |
tcatgacgctcgccggaggcat |
10837403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 10837031 - 10837088
Alignment:
| Q |
15 |
catcagacagtatggagattgatttctctattattttaggcatatgcacatgccacct |
72 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||| |
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| T |
10837031 |
catcagacagtatggaaattgatttctctattattttaggcatatgaacatcccacct |
10837088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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