View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1714_high_17 (Length: 379)
Name: NF1714_high_17
Description: NF1714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1714_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 216 - 361
Target Start/End: Complemental strand, 39346502 - 39346357
Alignment:
| Q |
216 |
gaagacgacaatgatgaagaaaactacaaaataaaaaactagtgagacttgaatcatcaaattaccatttctttatacaagtctgtatgaaatatctcct |
315 |
Q |
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| T |
39346502 |
gaagacgacaatgatgaagaaaactacaaaatctaaaactagtgagacttgaatcatcaaattatcatttctttatacaagtctgtatgaaatatctcct |
39346403 |
T |
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| Q |
316 |
aatagagttatatagaagagaagttttagagaacaaggcctatcat |
361 |
Q |
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| T |
39346402 |
aatagagttatatagaaaagaagttttagagaacaaggcctatcat |
39346357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 13 - 96
Target Start/End: Complemental strand, 39346718 - 39346635
Alignment:
| Q |
13 |
aatattcctactatggaggcaatactcatcatagtcatcacaataaaacattcttaatatcacaataaacaacattaactatca |
96 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
39346718 |
aatattcctactatggaggcaatactcatcatagtcatcacaataaaacattcttaatatcacaataaacgacattaactatca |
39346635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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