View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1714_high_2 (Length: 652)
Name: NF1714_high_2
Description: NF1714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1714_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 4 - 636
Target Start/End: Original strand, 25081364 - 25081994
Alignment:
| Q |
4 |
tccaataatatcttctaccaatttattctttgaaaatgctttgtgagcacaatcatgccctataacaaaaagctgtgtggtggaaaacaaaaaagagtac |
103 |
Q |
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| T |
25081364 |
tccaacaatatcttctaccaatttattctttgaaaatgctttgtgagcacaatcatgccctataacaaaaagctgtgtcgtggaaaacaaaaaagagtac |
25081463 |
T |
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| Q |
104 |
aattaataactgtggaacttgcaaagaattgattaatacacatgatactaacccctgttgctgcagtccctgtaaatgcccaagccagaggaagcagata |
203 |
Q |
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| T |
25081464 |
aattaatatctgtggaacttgcaaagaattgattaatacacatgatactaacccctgttgctgcagtccctgtaaacgcccaagcgagaggaagcagata |
25081563 |
T |
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| Q |
204 |
ccaaggcgctttcgaaatcaaaaatatccccaatgcataagacgtcactgatatcaaaacttttctccatgctttcatttcatctatttcaaacaccttt |
303 |
Q |
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| T |
25081564 |
ccaaggcgctttcgaaatcaaaaatatccccaatgcataagacgtcactgatatcaaaacttttctccatgctttcatttcatctatttcaaacaccttt |
25081663 |
T |
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| Q |
304 |
taccaatgcacaaagnnnnnnnnnnnnnntgtatataacaaatctatatatacacaatgctatttggagacgaaaaaatgtggagataatattacataag |
403 |
Q |
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| T |
25081664 |
taccaatacacaaag-aaaaatgaaaaaatgcatgtaacaaatctatatatacacaattctatttggagacgaaaaaatgtcgagataataatacataa- |
25081761 |
T |
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| Q |
404 |
agcaaaattttaaactgcagatatagtcacgattctgatcgcaccaagaactttgatattatgtagaactgtagaattgcaatctcaaatctcaatccca |
503 |
Q |
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| T |
25081762 |
agcaaaattttgaactgcagatatagtcacgattctgattgcaccacgatctttgatattatgtagaattgtagaactgcaatctcaaatatcaatccca |
25081861 |
T |
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| Q |
504 |
gttccagaaacaaacaaaaaagttcatgttggcgcgatccagaacattgtctggctcaaaaaattagtaataaaaatgcccgttggaaatagatctattc |
603 |
Q |
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| T |
25081862 |
gttccaaaatcaaaaaaaaaagttcatgttggcgtgatccagaacattgtatggctcaaacaattagtaataaaaatgctcgttggaaatagatctattc |
25081961 |
T |
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| Q |
604 |
aagaacaaccttcttcggaagggaattgatgac |
636 |
Q |
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| T |
25081962 |
aagaacaaccttcttcggaagggaattgatgac |
25081994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 54620702 - 54620770
Alignment:
| Q |
4 |
tccaataatatcttctaccaatttattctttgaaaatgctttgtgagcacaatcatgccctataacaaa |
72 |
Q |
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| T |
54620702 |
tccaacaatgtcttctaccaatttgtttgttgaaaatgatttgtgagcgcaatcatgtcctataacaaa |
54620770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 223
Target Start/End: Original strand, 54620926 - 54620999
Alignment:
| Q |
150 |
actaacccctgttgctgcagtccctgtaaatgcccaagccagaggaagcagataccaaggcgctttcgaaatca |
223 |
Q |
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| T |
54620926 |
actaaccccagttacagcagtccctgtccaagcccaagccagaggaagtagataccagggtgctttagaaatca |
54620999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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