View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1714_high_21 (Length: 354)
Name: NF1714_high_21
Description: NF1714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1714_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 8e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 11 - 195
Target Start/End: Original strand, 28830455 - 28830638
Alignment:
| Q |
11 |
atgaaaagatcaagaatgatgaaaacaacatctataaagagcttttacttttnnnnnnnncgtataccgtaaagcaaaacaataagacaacaatgtccat |
110 |
Q |
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| T |
28830455 |
atgaaaagatcaagaatgatgaaaacaacatctataaagagcttttacttttaaaaaaa-cgtataccgtaaagcaaaacaataagacaacaatgtccat |
28830553 |
T |
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| Q |
111 |
ggtcttttaaattttgtccctagtccactgcttaattcctttcacaacattatgggtgaaggtgaagacctattgccgtccctta |
195 |
Q |
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| T |
28830554 |
ggtcttttaaattttgtccctagtccactgcttaattcctttcacaacattatgggtgaaggtgaagacctattgccgtccctta |
28830638 |
T |
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