View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1714_high_24 (Length: 306)
Name: NF1714_high_24
Description: NF1714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1714_high_24 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 10 - 287
Target Start/End: Original strand, 48401621 - 48401898
Alignment:
| Q |
10 |
aagcaaaggcgacaaaatttatgatgaattgccaccaagaatgcctttggtggacattgttgagacaaaactcctagagtggagatgtgcatactataat |
109 |
Q |
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| T |
48401621 |
aagcaaaggcgacaaaatttatgataaattgccaccaagaatgcctttggtggacattgctgagacaaaactcctagagtggagatgtgcatactataat |
48401720 |
T |
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| Q |
110 |
taatagacacaaatcactcgtcatcacttgtcataaactaactcattggaagcaattactctcaaagaaaaaagatcatgagcaattgaataggatgtat |
209 |
Q |
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| T |
48401721 |
taatatacacaaatcactcgtcatcacttgtcacaaactaactcattggaagcaattactctcaaagaaaaaagatcatgagcaattgaataggatgtat |
48401820 |
T |
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| Q |
210 |
ccacctatgaaaaatgtgtccacctcatagagtatacatttgataatttagaaaggatgataaaatcaataattacgt |
287 |
Q |
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| T |
48401821 |
ccacctatgaaaaatgtgtccacctgatagagtatacatttgataatttagaaaggatgataaaatcaataattacgt |
48401898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 306
Target Start/End: Original strand, 48401919 - 48401953
Alignment:
| Q |
272 |
aaatcaataattacgtcaatgtggaaaataagaca |
306 |
Q |
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| T |
48401919 |
aaatcaataattacgtcaatgtggaaaataagaca |
48401953 |
T |
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