View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1714_high_27 (Length: 291)

Name: NF1714_high_27
Description: NF1714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1714_high_27
NF1714_high_27
[»] chr2 (7 HSPs)
chr2 (66-274)||(14487930-14488138)
chr2 (14-65)||(41767675-41767726)
chr2 (73-134)||(7994062-7994122)
chr2 (94-134)||(37996564-37996604)
chr2 (73-115)||(40746048-40746090)
chr2 (94-134)||(16903878-16903918)
chr2 (94-134)||(30899417-30899457)
[»] chr1 (6 HSPs)
chr1 (83-243)||(573398-573556)
chr1 (73-115)||(36152997-36153039)
chr1 (92-134)||(48594206-48594248)
chr1 (92-134)||(48598817-48598859)
chr1 (94-134)||(38328867-38328907)
chr1 (94-134)||(43755876-43755916)
[»] chr3 (12 HSPs)
chr3 (118-243)||(49244617-49244740)
chr3 (94-134)||(43104758-43104798)
chr3 (72-115)||(43786177-43786220)
chr3 (73-134)||(36992154-36992214)
chr3 (73-134)||(37017594-37017654)
chr3 (94-134)||(5113225-5113265)
chr3 (94-134)||(20586099-20586139)
chr3 (94-134)||(20586565-20586605)
chr3 (94-134)||(24394715-24394755)
chr3 (94-134)||(26006173-26006213)
chr3 (94-134)||(45000342-45000382)
chr3 (94-134)||(45000808-45000848)
[»] scaffold0155 (1 HSPs)
scaffold0155 (93-158)||(17366-17431)
[»] scaffold0180 (1 HSPs)
scaffold0180 (93-173)||(23033-23113)
[»] chr5 (7 HSPs)
chr5 (94-134)||(24027667-24027707)
chr5 (64-114)||(10022133-10022183)
chr5 (94-134)||(3595804-3595844)
chr5 (94-134)||(7858354-7858394)
chr5 (94-134)||(8321368-8321408)
chr5 (94-134)||(12330175-12330215)
chr5 (94-134)||(12330643-12330683)
[»] chr7 (6 HSPs)
chr7 (73-134)||(30414188-30414248)
chr7 (73-134)||(33140275-33140335)
chr7 (93-158)||(41224799-41224864)
chr7 (94-134)||(25137439-25137479)
chr7 (93-133)||(29006374-29006414)
chr7 (93-133)||(29007180-29007220)
[»] scaffold0508 (1 HSPs)
scaffold0508 (94-134)||(4160-4200)
[»] scaffold0022 (1 HSPs)
scaffold0022 (94-134)||(61601-61641)
[»] chr6 (4 HSPs)
chr6 (94-134)||(7635151-7635191)
chr6 (94-134)||(7635616-7635656)
chr6 (94-134)||(18290242-18290282)
chr6 (94-134)||(18290476-18290516)
[»] chr4 (3 HSPs)
chr4 (94-134)||(5235401-5235441)
chr4 (94-134)||(20174997-20175037)
chr4 (94-134)||(39412792-39412832)


Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 66 - 274
Target Start/End: Original strand, 14487930 - 14488138
Alignment:
Q  66 ggtgacatttagtatgggaaagagatcttttttcccataatgggaaagttactttttaaccattagatcgattatggaacacacttttatcataatctct 165  Q
    |||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  14487930 ggtggcatttagtatgggaaagggatcttttttcccattatgggaaagttactttttaaccattagattgattatggaacacacttttatcatagtctct 14488029  T
Q  166 ctacactatatctttttacacaccatcatcaattatcattctctctcctccatcccactcacctccatgagcaacaacataggattgacattcccgaatt 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14488030 ctacactatatctttttacacaccatcatcaattatcattctctctcctccatcccactcacctccatgagcaacaacataggattgacattcccgaatt 14488129  T
Q  266 ctccttctt 274  Q
    |||||||||    
T  14488130 ctccttctt 14488138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 41767726 - 41767675
Alignment:
Q  14 tacttcctaattttgttagcttgattatagcattataagagcttccaacaag 65  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41767726 tacttcctaattttgttagcttgattatagcattataagagcttccaacaag 41767675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 134
Target Start/End: Original strand, 7994062 - 7994122
Alignment:
Q  73 tttagtatgggaaagagatcttttttcccataatgggaaagttactttttaaccattagatc 134  Q
    ||||||||||||||| | |  |||||||||| |||||||||||| |||||||||||||||||    
T  7994062 tttagtatgggaaag-gctaatttttcccatcatgggaaagttagtttttaaccattagatc 7994122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 37996604 - 37996564
Alignment:
Q  94 tttttcccataatgggaaagttactttttaaccattagatc 134  Q
    |||||||||| |||||||||||| |||||||||||||||||    
T  37996604 tttttcccatcatgggaaagttagtttttaaccattagatc 37996564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 115
Target Start/End: Complemental strand, 40746090 - 40746048
Alignment:
Q  73 tttagtatgggaaagagatcttttttcccataatgggaaagtt 115  Q
    |||||||||||||||||| ||| |||||||||||| |||||||    
T  40746090 tttagtatgggaaagagaacttctttcccataatgagaaagtt 40746048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 16903918 - 16903878
Alignment:
Q  94 tttttcccataatgggaaagttactttttaaccattagatc 134  Q
    |||||||||  |||||||||||| |||||||||||||||||    
T  16903918 tttttcccaccatgggaaagttagtttttaaccattagatc 16903878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 30899417 - 30899457
Alignment:
Q  94 tttttcccataatgggaaagttactttttaaccattagatc 134  Q
    |||||||||  |||||||||||| |||||||||||||||||    
T  30899417 tttttcccaccatgggaaagttagtttttaaccattagatc 30899457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 83 - 243
Target Start/End: Original strand, 573398 - 573556
Alignment:
Q  83 gaaagagatcttttttcccataatgggaaagttactttttaaccattagatcgattatggaacacacttttatcataatctctctacactatatcttttt 182  Q
    ||||| |||||||||||| || ||||  |||||| ||||||||||||||||| | || | |||||| |||||||||| ||||| |||||||||| |||||    
T  573398 gaaagtgatcttttttcctatcatggacaagttattttttaaccattagatcaactaagaaacacatttttatcatagtctctttacactatat-ttttt 573496  T
Q  183 acacaccatcatcaattatcattctctctcctccatcccactcacctccatgagcaacaac 243  Q
    |||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  573497 acacac-atcatcaattatcattctctcccctccatctcactcacctccatgagcaacaac 573556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 115
Target Start/End: Original strand, 36152997 - 36153039
Alignment:
Q  73 tttagtatgggaaagagatcttttttcccataatgggaaagtt 115  Q
    |||||||||||||||||| ||| |||||||||||| |||||||    
T  36152997 tttagtatgggaaagagaacttctttcccataatgagaaagtt 36153039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 134
Target Start/End: Complemental strand, 48594248 - 48594206
Alignment:
Q  92 cttttttcccataatgggaaagttactttttaaccattagatc 134  Q
    |||||||||||| |||||||||||| ||||| |||||||||||    
T  48594248 cttttttcccatcatgggaaagttagtttttgaccattagatc 48594206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 134
Target Start/End: Complemental strand, 48598859 - 48598817
Alignment:
Q  92 cttttttcccataatgggaaagttactttttaaccattagatc 134  Q
    |||||||||||| |||||||||||| ||||| |||||||||||    
T  48598859 cttttttcccatcatgggaaagttagtttttgaccattagatc 48598817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 38328907 - 38328867
Alignment:
Q  94 tttttcccataatgggaaagttactttttaaccattagatc 134  Q
    |||||||||| |||||||||||| ||||||| |||||||||    
T  38328907 tttttcccatcatgggaaagttagtttttaatcattagatc 38328867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 43755876 - 43755916
Alignment:
Q  94 tttttcccataatgggaaagttactttttaaccattagatc 134  Q
    |||||||||  |||||||||||| |||||||||||||||||    
T  43755876 tttttcccaccatgggaaagttagtttttaaccattagatc 43755916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 9e-39; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 118 - 243
Target Start/End: Original strand, 49244617 - 49244740
Alignment:
Q  118 tttttaaccattagatcgattatggaacacacttttatcataatctctctacactatatctttttacacaccatcatcaattatcattctctctcctcca 217  Q
    ||||||||||||||||| | || ||||||| ||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||| ||| ||||||    
T  49244617 tttttaaccattagatcaactaaggaacacgcttttatcatagtctctctacactatat-tttttacacac-atcatcaattatcattccctcccctcca 49244714  T
Q  218 tcccactcacctccatgagcaacaac 243  Q
    ||||||||||||||||||||||||||    
T  49244715 tcccactcacctccatgagcaacaac 49244740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 43104798 - 43104758
Alignment:
Q  94 tttttcccataatgggaaagttactttttaaccattagatc 134  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  43104798 tttttcccataatgggaaagttagtttttaaccattagatc 43104758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 115
Target Start/End: Complemental strand, 43786220 - 43786177
Alignment:
Q  72 atttagtatgggaaagagatcttttttcccataatgggaaagtt 115  Q
    |||||||||||||||| || ||| ||||||||||||||||||||    
T  43786220 atttagtatgggaaagggagcttctttcccataatgggaaagtt 43786177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 134
Target Start/End: Complemental strand, 36992214 - 36992154
Alignment:
Q  73 tttagtatgggaaagagatcttttttcccataatgggaaagttactttttaaccattagatc 134  Q
    ||||||||||||||| | |  |||||||||  |||||||||||| |||||||||||||||||    
T  36992214 tttagtatgggaaag-gctaatttttcccaccatgggaaagttagtttttaaccattagatc 36992154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 134
Target Start/End: Complemental strand, 37017654 - 37017594
Alignment:
Q  73 tttagtatgggaaagagatcttttttcccataatgggaaagttactttttaaccattagatc 134  Q
    ||||||||||||||| | |  |||||||||  |||||||||||| |||||||||||||||||    
T  37017654 tttagtatgggaaag-gctaatttttcccaccatgggaaagttagtttttaaccattagatc 37017594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 5113225 - 5113265
Alignment:
Q  94 tttttcccataatgggaaagttactttttaaccattagatc 134  Q
    |||||||||  |||||||||||| |||||||||||||||||    
T  5113225 tttttcccaccatgggaaagttagtttttaaccattagatc 5113265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 20586099 - 20586139
Alignment:
Q  94 tttttcccataatgggaaagttactttttaaccattagatc 134  Q
    |||||||||  |||||||||||| |||||||||||||||||    
T  20586099 tttttcccaccatgggaaagttagtttttaaccattagatc 20586139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 20586605 - 20586565
Alignment:
Q  94 tttttcccataatgggaaagttactttttaaccattagatc 134  Q
    |||||||||  |||||||||||| |||||||||||||||||    
T  20586605 tttttcccaccatgggaaagttagtttttaaccattagatc 20586565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 24394755 - 24394715
Alignment:
Q  94 tttttcccataatgggaaagttactttttaaccattagatc 134  Q
    |||||||||  |||||||||||| |||||||||||||||||    
T  24394755 tttttcccaccatgggaaagttagtttttaaccattagatc 24394715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 26006173 - 26006213
Alignment:
Q  94 tttttcccataatgggaaagttactttttaaccattagatc 134  Q
    |||||||||  |||||||||||| |||||||||||||||||    
T  26006173 tttttcccaccatgggaaagttagtttttaaccattagatc 26006213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 45000342 - 45000382
Alignment:
Q  94 tttttcccataatgggaaagttactttttaaccattagatc 134  Q
    |||||||||  |||||||||||| |||||||||||||||||    
T  45000342 tttttcccactatgggaaagttagtttttaaccattagatc 45000382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 45000848 - 45000808
Alignment:
Q  94 tttttcccataatgggaaagttactttttaaccattagatc 134  Q
    |||||||||  |||||||||||| |||||||||||||||||    
T  45000848 tttttcccaccatgggaaagttagtttttaaccattagatc 45000808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 158
Target Start/End: Original strand, 17366 - 17431
Alignment:
Q  93 ttttttcccataatgggaaagttactttttaaccattagatcgattatggaacacacttttatcat 158  Q
    ||||||||||  |||||||||||| |||||||||||| |||| | || |||||||| |||||||||    
T  17366 ttttttcccaccatgggaaagttagtttttaaccatttgatcaaatagggaacacaattttatcat 17431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 173
Target Start/End: Complemental strand, 23113 - 23033
Alignment:
Q  93 ttttttcccataatgggaaagttactttttaaccattagatcgattatggaacacacttttatcataatctctctacacta 173  Q
    ||||||||||| |||||||||||| |||| |||||||||||  | || |||||| | |||||||||  |||||| ||||||    
T  23113 ttttttcccatcatgggaaagttagttttgaaccattagattaaatagggaacataattttatcatggtctctcaacacta 23033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 24027707 - 24027667
Alignment:
Q  94 tttttcccataatgggaaagttactttttaaccattagatc 134  Q
    |||||||||| |||||||||||| |||||||||||||||||    
T  24027707 tttttcccatcatgggaaagttagtttttaaccattagatc 24027667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 114
Target Start/End: Complemental strand, 10022183 - 10022133
Alignment:
Q  64 agggtgacatttagtatgggaaagagatcttttttcccataatgggaaagt 114  Q
    |||||||||||||||||||||| |   ||||||||||||| ||||||||||    
T  10022183 agggtgacatttagtatgggaatggactcttttttcccatgatgggaaagt 10022133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 3595804 - 3595844
Alignment:
Q  94 tttttcccataatgggaaagttactttttaaccattagatc 134  Q
    |||||||||  |||||||||||| |||||||||||||||||    
T  3595804 tttttcccaccatgggaaagttagtttttaaccattagatc 3595844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 7858354 - 7858394
Alignment:
Q  94 tttttcccataatgggaaagttactttttaaccattagatc 134  Q
    |||||||||  |||||||||||| |||||||||||||||||    
T  7858354 tttttcccaccatgggaaagttagtttttaaccattagatc 7858394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 8321408 - 8321368
Alignment:
Q  94 tttttcccataatgggaaagttactttttaaccattagatc 134  Q
    |||||||||  |||||||||||| |||||||||||||||||    
T  8321408 tttttcccaccatgggaaagttagtttttaaccattagatc 8321368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 12330175 - 12330215
Alignment:
Q  94 tttttcccataatgggaaagttactttttaaccattagatc 134  Q
    |||||||||  |||||||||||| |||||||||||||||||    
T  12330175 tttttcccaccatgggaaagttaatttttaaccattagatc 12330215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 12330683 - 12330643
Alignment:
Q  94 tttttcccataatgggaaagttactttttaaccattagatc 134  Q
    |||||||||  |||||||||||| |||||||||||||||||    
T  12330683 tttttcccaccatgggaaagttagtttttaaccattagatc 12330643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 134
Target Start/End: Original strand, 30414188 - 30414248
Alignment:
Q  73 tttagtatgggaaagagatcttttttcccataatgggaaagttactttttaaccattagatc 134  Q
    ||||||||||||||| | |  |||||||||  |||||||||||| |||||||||||||||||    
T  30414188 tttagtatgggaaag-gctaatttttcccaccatgggaaagttagtttttaaccattagatc 30414248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 134
Target Start/End: Complemental strand, 33140335 - 33140275
Alignment:
Q  73 tttagtatgggaaagagatcttttttcccataatgggaaagttactttttaaccattagatc 134  Q
    |||||||||||||||  | |||||||||||  |||||||||||| ||||| |||||||||||    
T  33140335 tttagtatgggaaagtta-cttttttcccaccatgggaaagttagtttttgaccattagatc 33140275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 158
Target Start/End: Complemental strand, 41224864 - 41224799
Alignment:
Q  93 ttttttcccataatgggaaagttactttttaaccattagatcgattatggaacacacttttatcat 158  Q
    ||||||||||  |||||||||||| |||||||||||| |||  | || |||||||| |||||||||    
T  41224864 ttttttcccaccatgggaaagttagtttttaaccatttgattaaatagggaacacaattttatcat 41224799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 25137439 - 25137479
Alignment:
Q  94 tttttcccataatgggaaagttactttttaaccattagatc 134  Q
    |||||||||  |||||||||||| |||||||||||||||||    
T  25137439 tttttcccaccatgggaaagttagtttttaaccattagatc 25137479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 133
Target Start/End: Original strand, 29006374 - 29006414
Alignment:
Q  93 ttttttcccataatgggaaagttactttttaaccattagat 133  Q
    ||||||||||  |||||||||||| ||||||||||||||||    
T  29006374 ttttttcccaccatgggaaagttagtttttaaccattagat 29006414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 133
Target Start/End: Complemental strand, 29007220 - 29007180
Alignment:
Q  93 ttttttcccataatgggaaagttactttttaaccattagat 133  Q
    ||||||||||  |||||||||||| ||||||||||||||||    
T  29007220 ttttttcccaccatgggaaagttagtttttaaccattagat 29007180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 4160 - 4200
Alignment:
Q  94 tttttcccataatgggaaagttactttttaaccattagatc 134  Q
    |||||||||  |||||||||||| |||||||||||||||||    
T  4160 tttttcccaccatgggaaagttagtttttaaccattagatc 4200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 61601 - 61641
Alignment:
Q  94 tttttcccataatgggaaagttactttttaaccattagatc 134  Q
    |||||||||| |||||||||||| ||||| |||||||||||    
T  61601 tttttcccatcatgggaaagttagtttttgaccattagatc 61641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 7635151 - 7635191
Alignment:
Q  94 tttttcccataatgggaaagttactttttaaccattagatc 134  Q
    |||||||||  |||||||||||| |||||||||||||||||    
T  7635151 tttttcccaccatgggaaagttagtttttaaccattagatc 7635191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 7635656 - 7635616
Alignment:
Q  94 tttttcccataatgggaaagttactttttaaccattagatc 134  Q
    |||||||||  |||||||||||| |||||||||||||||||    
T  7635656 tttttcccaccatgggaaagttagtttttaaccattagatc 7635616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 18290242 - 18290282
Alignment:
Q  94 tttttcccataatgggaaagttactttttaaccattagatc 134  Q
    |||||||||  |||||||||||| |||||||||||||||||    
T  18290242 tttttcccaccatgggaaagttaatttttaaccattagatc 18290282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 18290516 - 18290476
Alignment:
Q  94 tttttcccataatgggaaagttactttttaaccattagatc 134  Q
    |||||||||  |||||||||||| |||||||||||||||||    
T  18290516 tttttcccaccatgggaaagttagtttttaaccattagatc 18290476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 5235401 - 5235441
Alignment:
Q  94 tttttcccataatgggaaagttactttttaaccattagatc 134  Q
    |||||||||  |||||||||||| |||||||||||||||||    
T  5235401 tttttcccaccatgggaaagttagtttttaaccattagatc 5235441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 20174997 - 20175037
Alignment:
Q  94 tttttcccataatgggaaagttactttttaaccattagatc 134  Q
    |||||||||  |||||||||||| |||||||||||||||||    
T  20174997 tttttcccaccatgggaaagttagtttttaaccattagatc 20175037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 39412792 - 39412832
Alignment:
Q  94 tttttcccataatgggaaagttactttttaaccattagatc 134  Q
    |||||||||| |||||||||||| |||||||||||| ||||    
T  39412792 tttttcccatcatgggaaagttagtttttaaccattggatc 39412832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University