View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1714_high_35 (Length: 245)
Name: NF1714_high_35
Description: NF1714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1714_high_35 |
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Alignment Details
Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 49700294 - 49700429
Alignment:
| Q |
1 |
ttaaaataaaattgtgatgtccacccttcagaaagnnnnnnnnn-gaataattaaatcctttttatcgaccattttcatcttatttctttgaaagataag |
99 |
Q |
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| T |
49700294 |
ttaaaataaaattgtgatgtccacccttcagaaagaaaacaaaaagaataattaaatcctttttattgaccattttcatcttatttctttgaaagataag |
49700393 |
T |
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| Q |
100 |
tgaaggcagggctggtccaatggcaagagagtccaa |
135 |
Q |
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| T |
49700394 |
tgaaggcagggctggtccattggcaacacagtccaa |
49700429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 240
Target Start/End: Original strand, 49700496 - 49700534
Alignment:
| Q |
202 |
cactaacataatcatctctctattcctttcgctcctatg |
240 |
Q |
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| T |
49700496 |
cactaacataatcatctttctattcctttcgctcctatg |
49700534 |
T |
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