View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1714_high_36 (Length: 241)
Name: NF1714_high_36
Description: NF1714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1714_high_36 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 6133580 - 6133802
Alignment:
| Q |
1 |
gccgaagctgtaatcaactgcgcggtagcatagattcagtaacccccatttagtgttagggtcggctgaattcggcatgttgatagtgcaatagagggaa |
100 |
Q |
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| T |
6133580 |
gccgaagctgtaatcaactgcgcggtagcatagattcagtaactcccatttagtgttagggtcggctgaattgggcatgttgatagtgcgatagagggaa |
6133679 |
T |
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| Q |
101 |
gggtcctttgagatttcgcgccatatggtgcaaacattgtaagggcgaatgagaatatcgattgagtcaagcttccggaaaatggataacactgcatctc |
200 |
Q |
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| T |
6133680 |
tggtcctttgagatttcgcgccatatggtgcaaacattgtaagggcgaatgagaatatcgattgagtcaagcttccggaaaatggataacactgaatctc |
6133779 |
T |
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| Q |
201 |
gtggaagatctacccagtttcgt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
6133780 |
gtggaagatctacccagtttcgt |
6133802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 69 - 223
Target Start/End: Complemental strand, 6052255 - 6052101
Alignment:
| Q |
69 |
aattcggcatgttgatagtgcaatagagggaagggtcctttgagatttcgcgccatatggtgcaaacattgtaagggcgaatgagaatatcgattgagtc |
168 |
Q |
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|||| |||||||| || |||| | |||| ||||||| || ||||||| ||||||| ||||||||||||||| || ||||| ||||| |||||||| ||| |
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| T |
6052255 |
aattgggcatgttaatggtgcgaaagagaaaagggtctttggagattttgcgccatgtggtgcaaacattgtgagcgcgaacgagaagatcgattgcgtc |
6052156 |
T |
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| Q |
169 |
aagcttccggaaaatggataacactgcatctcgtggaagatctacccagtttcgt |
223 |
Q |
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| T |
6052155 |
gagcttccggaaaatggataagactgcatctcgtggaagatccagccagtttcgt |
6052101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 91 - 223
Target Start/End: Complemental strand, 6037242 - 6037110
Alignment:
| Q |
91 |
atagagggaagggtcctttgagatttcgcgccatatggtgcaaacattgtaagggcgaatgagaatatcgattgagtcaagcttccggaaaatggataac |
190 |
Q |
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||||||| ||||||| || ||||||| |||||| | |||||||| || || |||||| |||||||| || | | ||||||| ||||||||||||| |
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| T |
6037242 |
atagaggaaagggtctttggagattttgcgccacgtagtgcaaaccctgggagtgcgaataagaatatcaatggtgggaagcttctggaaaatggataag |
6037143 |
T |
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| Q |
191 |
actgcatctcgtggaagatctacccagtttcgt |
223 |
Q |
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| T |
6037142 |
actgcatctcgtggaagatccagccagtttcgt |
6037110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 222
Target Start/End: Complemental strand, 6045567 - 6045419
Alignment:
| Q |
74 |
ggcatgttgatagtgcaatagagggaagggtcctttgagatttcgcgccatatggtgcaaacattgtaagggcgaatgagaatatcgattgagtcaagct |
173 |
Q |
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| T |
6045567 |
ggcatgtcgatggtgtgatagaggaaaggatcctttgagattttgcgccatgtggtgcaaacgttatgagcgcgatggagaagatcgatcgtgtgaagtt |
6045468 |
T |
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| Q |
174 |
tccggaaaatggataacactgcatctcgtggaagatctacccagtttcg |
222 |
Q |
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| T |
6045467 |
tccggaaaatggttaatacgacatctgatggaagatccaaccagtttcg |
6045419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 6040936 - 6040872
Alignment:
| Q |
74 |
ggcatgttgatagtgcaatagagggaagggtcctttgagatttcgcgccatatggtgcaaacatt |
138 |
Q |
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||||||| ||| ||| ||||||| |||| ||||||||||||| ||||||| ||||||||||||| |
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| T |
6040936 |
ggcatgtcgatggtgtgatagaggaaaggatcctttgagattttgcgccatgtggtgcaaacatt |
6040872 |
T |
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