View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1714_high_9 (Length: 428)
Name: NF1714_high_9
Description: NF1714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1714_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 17 - 423
Target Start/End: Complemental strand, 32461203 - 32460797
Alignment:
| Q |
17 |
agttatcctttcccaacggagcgccaccacaagccacagtttttaacgatgacaaatcatacccatccgtcactccctctttactgatcgccaccaccac |
116 |
Q |
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|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
32461203 |
agttatcctttcccaacggagcacctccacaagccacagtttttaacgatgacaaatcatacccatccgtcactccctctttactcatcgccaccaccac |
32461104 |
T |
|
| Q |
117 |
gggcggcgccaccgcaacattagtcactctaaacctctccacggcacccaacattttccccaattcaaacctctccatcatcaccaccgtttccatcata |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32461103 |
gggcggcgccaccgcaacattagtcactctaaacctctccacggcacccaacattttccccaattcaaacctctccatcatcaccaccgtttccatcata |
32461004 |
T |
|
| Q |
217 |
gccacacccttcaaaaggtacgtaaaaccgtacacgtgaaaacacggcactgttaacaaacacaccgcaggactcgccgtcggaatcctaacggcattgt |
316 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
32461003 |
gccacacccttcaaaaggtacgtaaaaccgtacacgtgaaaacacggcactgttaacaaacacaccgcaggattcgccgtcggaatcctaacggcattgt |
32460904 |
T |
|
| Q |
317 |
atgccgccaccgtcgccgtcaagttgcgatgagtaagcatcactcctttcgatttccctgtggttcctgatattagagatataaaagttagttatattca |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32460903 |
atgccgccaccgtcgccgtcaagttgcgatgagtaagcatcactcctttcgatttccctgtggttcctgatattagagatataaaagctagttatattca |
32460804 |
T |
|
| Q |
417 |
tctcact |
423 |
Q |
| |
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| ||||| |
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| T |
32460803 |
tttcact |
32460797 |
T |
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