View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1714_low_12 (Length: 419)

Name: NF1714_low_12
Description: NF1714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1714_low_12
NF1714_low_12
[»] chr2 (31 HSPs)
chr2 (209-310)||(6333359-6333461)
chr2 (179-267)||(7588531-7588618)
chr2 (189-265)||(14152096-14152171)
chr2 (179-269)||(22351639-22351728)
chr2 (209-315)||(37245491-37245609)
chr2 (215-275)||(927910-927969)
chr2 (214-316)||(9074189-9074302)
chr2 (191-269)||(43021713-43021790)
chr2 (214-269)||(8852052-8852106)
chr2 (178-269)||(14382926-14383016)
chr2 (214-269)||(24997075-24997129)
chr2 (228-315)||(31192949-31193049)
chr2 (229-275)||(2780755-2780801)
chr2 (214-268)||(12855014-12855067)
chr2 (216-266)||(17485814-17485863)
chr2 (216-266)||(17929283-17929332)
chr2 (214-268)||(30822609-30822662)
chr2 (229-275)||(38901729-38901775)
chr2 (213-315)||(39433977-39434091)
chr2 (181-269)||(1073108-1073195)
chr2 (215-275)||(1987115-1987174)
chr2 (214-269)||(4296796-4296850)
chr2 (216-266)||(1308725-1308774)
chr2 (199-269)||(13151509-13151578)
chr2 (269-315)||(1987179-1987227)
chr2 (269-315)||(43495682-43495730)
chr2 (189-269)||(6362924-6363002)
chr2 (229-269)||(7763512-7763552)
chr2 (269-310)||(31174156-31174199)
chr2 (229-269)||(36526830-36526870)
chr2 (178-262)||(38997290-38997373)
[»] chr5 (36 HSPs)
chr5 (181-316)||(14278789-14278936)
chr5 (179-269)||(27942449-27942538)
chr5 (179-269)||(40888852-40888941)
chr5 (178-275)||(42608062-42608158)
chr5 (203-275)||(8176321-8176392)
chr5 (181-269)||(19241276-19241363)
chr5 (181-269)||(32976600-32976687)
chr5 (189-265)||(37882457-37882532)
chr5 (203-275)||(41153024-41153095)
chr5 (203-275)||(41263344-41263415)
chr5 (220-315)||(25652812-25652919)
chr5 (179-269)||(7650961-7651050)
chr5 (178-269)||(27407067-27407157)
chr5 (179-269)||(31008409-31008499)
chr5 (229-315)||(4577012-4577111)
chr5 (181-269)||(42317848-42317935)
chr5 (181-269)||(42807024-42807111)
chr5 (214-269)||(31013868-31013922)
chr5 (216-266)||(23089513-23089562)
chr5 (189-271)||(34529404-34529485)
chr5 (269-315)||(10569775-10569823)
chr5 (230-275)||(25032361-25032406)
chr5 (178-266)||(25670933-25671020)
chr5 (269-310)||(27407714-27407757)
chr5 (181-269)||(30648137-30648224)
chr5 (216-271)||(9274472-9274525)
chr5 (216-266)||(3454731-3454780)
chr5 (216-262)||(4219472-4219517)
chr5 (281-315)||(8176268-8176302)
chr5 (229-275)||(10569828-10569874)
chr5 (216-266)||(13479851-13479900)
chr5 (214-275)||(15972560-15972620)
chr5 (229-266)||(39238421-39238458)
chr5 (269-310)||(8681258-8681301)
chr5 (207-275)||(8681306-8681373)
chr5 (181-229)||(27420641-27420689)
[»] chr3 (61 HSPs)
chr3 (189-274)||(46572944-46573028)
chr3 (181-269)||(29701644-29701731)
chr3 (178-269)||(50415854-50415944)
chr3 (179-269)||(44084269-44084358)
chr3 (181-269)||(30418453-30418540)
chr3 (181-269)||(32120462-32120549)
chr3 (181-269)||(43473852-43473939)
chr3 (204-275)||(25832742-25832811)
chr3 (179-269)||(6048720-6048809)
chr3 (179-269)||(20139320-20139409)
chr3 (209-275)||(42601751-42601816)
chr3 (179-269)||(51999261-51999350)
chr3 (214-275)||(35424027-35424087)
chr3 (189-269)||(138945-139024)
chr3 (209-269)||(4045970-4046029)
chr3 (209-269)||(42560891-42560950)
chr3 (186-269)||(41183241-41183323)
chr3 (204-315)||(41890520-41890642)
chr3 (216-275)||(49147306-49147364)
chr3 (213-275)||(25450652-25450713)
chr3 (228-310)||(26550105-26550186)
chr3 (229-275)||(33935000-33935046)
chr3 (229-275)||(42601523-42601569)
chr3 (229-275)||(49823188-49823234)
chr3 (209-275)||(50033657-50033722)
chr3 (229-275)||(51427109-51427155)
chr3 (269-315)||(33748745-33748793)
chr3 (214-269)||(17466510-17466564)
chr3 (214-269)||(47144168-47144222)
chr3 (224-275)||(49357515-49357565)
chr3 (228-275)||(50176103-50176150)
chr3 (179-269)||(7008015-7008104)
chr3 (229-275)||(7521155-7521201)
chr3 (179-265)||(10426459-10426544)
chr3 (214-268)||(25790800-25790853)
chr3 (216-266)||(26165581-26165630)
chr3 (229-275)||(37410437-37410483)
chr3 (179-269)||(55026699-55026788)
chr3 (216-269)||(12974665-12974717)
chr3 (179-275)||(47701080-47701176)
chr3 (214-275)||(50017048-50017108)
chr3 (217-269)||(27847407-27847458)
chr3 (181-269)||(50733978-50734065)
chr3 (181-269)||(50778790-50778877)
chr3 (214-269)||(5845164-5845218)
chr3 (199-266)||(36178731-36178797)
chr3 (267-307)||(53722450-53722492)
chr3 (216-266)||(35472653-35472702)
chr3 (237-275)||(35853210-35853248)
chr3 (179-269)||(37183861-37183950)
chr3 (281-315)||(37410384-37410418)
chr3 (281-315)||(42601470-42601504)
chr3 (237-275)||(43022665-43022703)
chr3 (237-275)||(49710407-49710445)
chr3 (228-269)||(744224-744265)
chr3 (269-315)||(15493787-15493835)
chr3 (282-315)||(49823135-49823168)
chr3 (217-261)||(6832382-6832425)
chr3 (269-310)||(33795465-33795508)
chr3 (209-275)||(33795513-33795575)
chr3 (282-310)||(42601836-42601864)
[»] chr4 (42 HSPs)
chr4 (181-269)||(34199293-34199380)
chr4 (179-275)||(39113773-39113868)
chr4 (181-269)||(6290561-6290648)
chr4 (179-269)||(3618477-3618566)
chr4 (179-269)||(40720994-40721083)
chr4 (181-269)||(3533331-3533418)
chr4 (178-269)||(8991741-8991831)
chr4 (179-269)||(28899291-28899380)
chr4 (179-269)||(33523229-33523318)
chr4 (229-275)||(53184114-53184160)
chr4 (181-269)||(56053978-56054065)
chr4 (186-269)||(38173521-38173603)
chr4 (216-275)||(54356914-54356972)
chr4 (216-266)||(35809159-35809208)
chr4 (179-269)||(48506630-48506719)
chr4 (181-269)||(23540450-23540537)
chr4 (266-315)||(40596727-40596778)
chr4 (217-269)||(55560503-55560554)
chr4 (216-275)||(12158134-12158192)
chr4 (228-275)||(31848792-31848839)
chr4 (216-275)||(39049101-39049159)
chr4 (214-269)||(46917535-46917589)
chr4 (204-275)||(47750243-47750312)
chr4 (215-269)||(34464047-34464100)
chr4 (219-268)||(53348086-53348134)
chr4 (209-269)||(16020836-16020895)
chr4 (267-316)||(39418283-39418334)
chr4 (214-269)||(2215306-2215360)
chr4 (269-315)||(18469332-18469379)
chr4 (186-265)||(33077901-33077979)
chr4 (216-266)||(4981505-4981554)
chr4 (228-266)||(13094417-13094455)
chr4 (179-269)||(13110520-13110609)
chr4 (216-266)||(17329940-17329988)
chr4 (281-315)||(31848739-31848773)
chr4 (216-266)||(45081439-45081488)
chr4 (281-315)||(53184061-53184095)
chr4 (229-278)||(55930-55979)
chr4 (269-315)||(10089906-10089954)
chr4 (229-266)||(19272791-19272828)
chr4 (229-269)||(33604665-33604705)
chr4 (215-275)||(34564119-34564178)
[»] chr7 (30 HSPs)
chr7 (179-269)||(47159519-47159607)
chr7 (179-269)||(36518474-36518563)
chr7 (209-275)||(22737613-22737678)
chr7 (186-269)||(37887813-37887895)
chr7 (209-315)||(25218773-25218891)
chr7 (209-269)||(28318067-28318126)
chr7 (181-269)||(33078809-33078896)
chr7 (229-269)||(35029133-35029173)
chr7 (217-269)||(42881355-42881406)
chr7 (214-269)||(5813092-5813146)
chr7 (204-275)||(22191205-22191274)
chr7 (269-313)||(35193086-35193132)
chr7 (229-275)||(21654854-21654900)
chr7 (179-269)||(40302515-40302604)
chr7 (269-315)||(24793550-24793598)
chr7 (214-315)||(30630779-30630891)
chr7 (186-267)||(37951713-37951793)
chr7 (224-272)||(25038614-25038661)
chr7 (181-269)||(33508550-33508638)
chr7 (204-275)||(43202157-43202228)
chr7 (216-275)||(114486-114544)
chr7 (281-315)||(21654919-21654953)
chr7 (237-275)||(43571112-43571150)
chr7 (229-275)||(48984915-48984961)
chr7 (282-315)||(22737560-22737593)
chr7 (191-244)||(37888523-37888575)
chr7 (282-315)||(48984981-48985014)
chr7 (229-269)||(30566608-30566648)
chr7 (229-269)||(30720128-30720168)
chr7 (218-266)||(32130298-32130345)
[»] chr1 (40 HSPs)
chr1 (214-315)||(17783368-17783481)
chr1 (209-315)||(41542316-41542432)
chr1 (181-269)||(2478352-2478439)
chr1 (192-275)||(3755046-3755128)
chr1 (209-315)||(8464085-8464203)
chr1 (192-269)||(8468293-8468369)
chr1 (214-275)||(44334280-44334340)
chr1 (214-275)||(44929308-44929368)
chr1 (181-269)||(48388132-48388219)
chr1 (181-269)||(51494496-51494583)
chr1 (186-269)||(36230320-36230402)
chr1 (229-275)||(44451288-44451334)
chr1 (229-315)||(44651078-44651177)
chr1 (217-269)||(19578934-19578985)
chr1 (181-269)||(31159345-31159432)
chr1 (181-269)||(48404288-48404375)
chr1 (214-269)||(31468124-31468178)
chr1 (229-275)||(643840-643886)
chr1 (214-268)||(45239129-45239182)
chr1 (269-316)||(52933732-52933781)
chr1 (269-316)||(52941367-52941416)
chr1 (216-269)||(29523696-29523748)
chr1 (181-269)||(45623554-45623641)
chr1 (214-269)||(27630484-27630538)
chr1 (178-269)||(29919325-29919415)
chr1 (268-308)||(36303037-36303079)
chr1 (214-269)||(37420368-37420422)
chr1 (216-275)||(48729315-48729373)
chr1 (229-271)||(20584873-20584915)
chr1 (216-266)||(35847148-35847197)
chr1 (281-315)||(44451235-44451269)
chr1 (281-315)||(44929255-44929289)
chr1 (269-308)||(48729378-48729419)
chr1 (229-275)||(52933786-52933832)
chr1 (229-275)||(52941421-52941467)
chr1 (229-269)||(23092774-23092814)
chr1 (229-269)||(30878568-30878608)
chr1 (229-269)||(37646584-37646624)
chr1 (229-269)||(37691314-37691354)
chr1 (229-269)||(45456175-45456215)
[»] chr6 (18 HSPs)
chr6 (186-269)||(8669855-8669937)
chr6 (214-275)||(29428536-29428596)
chr6 (179-269)||(8660517-8660606)
chr6 (229-275)||(32359753-32359799)
chr6 (181-269)||(34838541-34838628)
chr6 (229-275)||(6380507-6380553)
chr6 (179-269)||(30446202-30446291)
chr6 (181-269)||(10883832-10883919)
chr6 (214-269)||(197797-197851)
chr6 (214-268)||(631511-631564)
chr6 (214-269)||(17961288-17961342)
chr6 (204-275)||(22627819-22627889)
chr6 (214-269)||(34328274-34328328)
chr6 (281-315)||(6380454-6380488)
chr6 (237-275)||(6725643-6725681)
chr6 (269-315)||(8219004-8219052)
chr6 (229-269)||(12501839-12501879)
chr6 (229-265)||(24348440-24348476)
[»] chr8 (36 HSPs)
chr8 (179-269)||(35931820-35931909)
chr8 (186-271)||(29637177-29637261)
chr8 (181-269)||(1958204-1958291)
chr8 (209-275)||(41477171-41477236)
chr8 (214-274)||(17741705-17741764)
chr8 (203-275)||(18029517-18029588)
chr8 (179-271)||(23353205-23353296)
chr8 (204-275)||(30470836-30470906)
chr8 (229-275)||(34955684-34955730)
chr8 (209-315)||(36912405-36912523)
chr8 (214-275)||(5212285-5212344)
chr8 (181-269)||(45101049-45101136)
chr8 (178-269)||(15053589-15053679)
chr8 (204-275)||(26632171-26632241)
chr8 (204-275)||(38584912-38584982)
chr8 (204-275)||(39811076-39811147)
chr8 (179-266)||(43524418-43524504)
chr8 (209-275)||(8609999-8610064)
chr8 (229-275)||(13814954-13815000)
chr8 (209-274)||(30289749-30289815)
chr8 (216-266)||(40283470-40283519)
chr8 (229-275)||(42860721-42860767)
chr8 (269-315)||(30470783-30470831)
chr8 (181-269)||(12272506-12272593)
chr8 (189-269)||(31129527-31129606)
chr8 (229-269)||(42859932-42859972)
chr8 (214-269)||(35099428-35099482)
chr8 (178-265)||(43525117-43525203)
chr8 (214-269)||(43618373-43618427)
chr8 (229-275)||(4625512-4625558)
chr8 (281-315)||(17494519-17494553)
chr8 (281-315)||(18029464-18029498)
chr8 (216-266)||(26244492-26244541)
chr8 (269-307)||(7990489-7990529)
chr8 (282-310)||(41477256-41477284)
chr8 (229-269)||(44503174-44503214)
[»] scaffold0054 (1 HSPs)
scaffold0054 (181-269)||(57767-57854)
[»] scaffold0012 (1 HSPs)
scaffold0012 (209-310)||(124004-124115)
[»] scaffold0100 (2 HSPs)
scaffold0100 (266-315)||(30503-30554)
scaffold0100 (191-275)||(30556-30639)
[»] scaffold0362 (1 HSPs)
scaffold0362 (229-269)||(5347-5387)


Alignment Details
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 209 - 310
Target Start/End: Complemental strand, 6333461 - 6333359
Alignment:
Q  209 aacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctcttattcaactttta--ctctccaatggtttttcattcaacac 306  Q
    |||||||||||||||||||||||| ||||||| || ||| || |||||||||||||||||||||||||||||  |||||||||| |||||||||||||||    
T  6333461 aacaacattcaacatccacttttt-caattcctaatattccatatcattttctctctcttattcaacttttatcctctccaatgatttttcattcaacac 6333363  T
Q  307 tcta 310  Q
    ||||    
T  6333362 tcta 6333359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 179 - 267
Target Start/End: Complemental strand, 7588618 - 7588531
Alignment:
Q  179 ttagacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctct 267  Q
    |||||| |||||||||||| ||| ||||| |||||| ||||||| ||||||||| |||||||||||| | |||||||||||||||||||    
T  7588618 ttagaccatttacaatggtaaaatacattcaacaaccttcaacacccacttttt-caattcccaacactccacatcattttctctctct 7588531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 189 - 265
Target Start/End: Complemental strand, 14152171 - 14152096
Alignment:
Q  189 tacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctct 265  Q
    ||||||||| |||| |||| |||||||||||||| ||||||||| |||||||||||| | |||||||||||||||||    
T  14152171 tacaatggttaaaaccattcaacaacattcaacacccacttttt-caattcccaacactccacatcattttctctct 14152096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 179 - 269
Target Start/End: Complemental strand, 22351728 - 22351639
Alignment:
Q  179 ttagacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||||| |||||||||||| |  || ||| |||||| ||||||| ||||||||| |||||||||||| | |||||||||||||||||||||    
T  22351728 ttagaccatttacaatggtaatcaatattcaacaaccttcaacacccacttttt-caattcccaacactccacatcattttctctctctta 22351639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 209 - 315
Target Start/End: Original strand, 37245491 - 37245609
Alignment:
Q  209 aacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctcttattcaac-----------ttttac--tctccaatggtttt 295  Q
    |||| ||||||||| ||||||||| |||||||||||| | |||||||||||||||||||||||||||           ||||||  ||||||||||||||    
T  37245491 aacaccattcaacacccacttttt-caattcccaacactccacatcattttctctctcttattcaacactcattcaacttttaccctctccaatggtttt 37245589  T
Q  296 tcattcaacactctatccca 315  Q
    ||||||||||||||| ||||    
T  37245590 tcattcaacactctacccca 37245609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 215 - 275
Target Start/End: Complemental strand, 927969 - 927910
Alignment:
Q  215 attcaacatccacttttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    |||||||| |||||||||| ||||||||||| | |||||||||||||||||||||||||||    
T  927969 attcaacacccactttttt-aattcccaacactccacatcattttctctctcttattcaac 927910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 214 - 316
Target Start/End: Complemental strand, 9074302 - 9074189
Alignment:
Q  214 cattcaacatccacttttttcaattcccaacatttcacatcattttctctctcttatt-----------caactttta--ctctccaatggtttttcatt 300  Q
    ||||||||| |||||||||| ||||||||||| | |||||||||||||||||||||||           |||||||||  ||||||||||||||||||||    
T  9074302 cattcaaca-ccactttttt-aattcccaacactccacatcattttctctctcttattcaacactcattcaacttttaccctctccaatggtttttcatt 9074205  T
Q  301 caacactctatcccat 316  Q
    |||||||||| |||||    
T  9074204 caacactctaccccat 9074189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 191 - 269
Target Start/End: Original strand, 43021713 - 43021790
Alignment:
Q  191 caatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    ||||||| | ||| ||| |||||| ||||||| |||||||| ||||||||||||| | |||||||||||||||||||||    
T  43021713 caatggtaacaaatattcaacaaccttcaacacccactttt-tcaattcccaacactccacatcattttctctctctta 43021790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 8852052 - 8852106
Alignment:
Q  214 cattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    ||||||||| |||||||| ||||||||||||| | |||||||||||||||||||||    
T  8852052 cattcaacacccactttt-tcaattcccaacactccacatcattttctctctctta 8852106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 178 - 269
Target Start/End: Original strand, 14382926 - 14383016
Alignment:
Q  178 attagacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    ||||||| |||||||||||  ||| | ||| || |||  ||||||||||||||| |||||||| |||| | |||||||||||||||||||||    
T  14382926 attagaccatttacaatggcaaaatatattcaaaaaccctcaacatccactttt-tcaattcctaacactccacatcattttctctctctta 14383016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 24997075 - 24997129
Alignment:
Q  214 cattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    ||||||||| |||||||| ||||||||||||| | |||||||||||||||||||||    
T  24997075 cattcaacacccactttt-tcaattcccaacactccacatcattttctctctctta 24997129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 228 - 315
Target Start/End: Complemental strand, 31193049 - 31192949
Alignment:
Q  228 ttttttcaattcccaacatttcacatcattttctctctcttat-----------tcaactttta--ctctccaatggtttttcattcaacactctatccc 314  Q
    ||||||||||| |||||| | ||||||||||||||||||||||           ||||||||||  |||||||||||||||||||||||||||||| |||    
T  31193049 ttttttcaatttccaacactccacatcattttctctctcttattcaatactcattcaacttttaccctctccaatggtttttcattcaacactctacccc 31192950  T
Q  315 a 315  Q
    |    
T  31192949 a 31192949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 2780801 - 2780755
Alignment:
Q  229 tttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    |||||||||||| ||||||  ||||||||||||||||||||||||||    
T  2780801 tttttcaattcctaacattctacatcattttctctctcttattcaac 2780755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 268
Target Start/End: Original strand, 12855014 - 12855067
Alignment:
Q  214 cattcaacatccacttttttcaattcccaacatttcacatcattttctctctctt 268  Q
    ||||||||| |||||||| ||||||||||||| | ||||||||||||||||||||    
T  12855014 cattcaacacccactttt-tcaattcccaacactccacatcattttctctctctt 12855067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 266
Target Start/End: Original strand, 17485814 - 17485863
Alignment:
Q  216 ttcaacatccacttttttcaattcccaacatttcacatcattttctctctc 266  Q
    |||||||||||||||| ||||||||||||| | ||||||||||||||||||    
T  17485814 ttcaacatccactttt-tcaattcccaacactccacatcattttctctctc 17485863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 266
Target Start/End: Complemental strand, 17929332 - 17929283
Alignment:
Q  216 ttcaacatccacttttttcaattcccaacatttcacatcattttctctctc 266  Q
    ||||||||||| |||||||||||||||||| | ||||||||||||||||||    
T  17929332 ttcaacatcca-ttttttcaattcccaacactccacatcattttctctctc 17929283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 268
Target Start/End: Complemental strand, 30822662 - 30822609
Alignment:
Q  214 cattcaacatccacttttttcaattcccaacatttcacatcattttctctctctt 268  Q
    ||||||||| ||||||||| |||||||||||| | ||||||||||||||||||||    
T  30822662 cattcaacacccacttttt-caattcccaacactccacatcattttctctctctt 30822609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 275
Target Start/End: Original strand, 38901729 - 38901775
Alignment:
Q  229 tttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    |||||||||||| |||| | |||||||||||||||||||||||||||    
T  38901729 tttttcaattccaaacactccacatcattttctctctcttattcaac 38901775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 315
Target Start/End: Complemental strand, 39434091 - 39433977
Alignment:
Q  213 acattcaacatccacttttttcaattcccaacatttcacatcattttctctctcttatt-----------caactttta--ctctccaatggtttttcat 299  Q
    |||||||||| ||||||||| ||||| |||||||| ||||||||||| ||||| |||||           |||||||||  |||||||||| ||||||||    
T  39434091 acattcaacacccacttttt-caatttccaacattccacatcattttttctcttttattaaacactcattcaacttttatcctctccaatgatttttcat 39433993  T
Q  300 tcaacactctatccca 315  Q
    ||||||||||||||||    
T  39433992 tcaacactctatccca 39433977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 269
Target Start/End: Complemental strand, 1073195 - 1073108
Alignment:
Q  181 agacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||| |||||||||||| ||| | ||| ||||||  |||||||||||| |||||||||  ||||| | ||| |||||||||||||||||    
T  1073195 agaccatttacaatggtaaaacaaattcaacaaccctcaacatccact-ttttcaattttcaacactccacttcattttctctctctta 1073108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 275
Target Start/End: Original strand, 1987115 - 1987174
Alignment:
Q  215 attcaacatccacttttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    ||||||||| ||||||| ||||||| ||||| | ||||||||||||| |||||||||||||    
T  1987115 attcaacattcactttt-tcaattctcaacactccacatcattttctatctcttattcaac 1987174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 4296850 - 4296796
Alignment:
Q  214 cattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    ||||||||| ||||||||| |||||||||||| | ||||| |||||||||||||||    
T  4296850 cattcaacacccacttttt-caattcccaacactccacattattttctctctctta 4296796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 266
Target Start/End: Complemental strand, 1308774 - 1308725
Alignment:
Q  216 ttcaacatccacttttttcaattcccaacatttcacatcattttctctctc 266  Q
    ||||||||||||||||| ||||| |||||| | ||||||||||||||||||    
T  1308774 ttcaacatccacttttt-caatttccaacactccacatcattttctctctc 1308725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 199 - 269
Target Start/End: Complemental strand, 13151578 - 13151509
Alignment:
Q  199 aaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||| |||| |||||||||||||| |||| ||||||||||||||||| | ||||| ||||| | |||||||    
T  13151578 aaaaccattcaacaacattcaacacccac-tttttcaattcccaacactgcacataattttttttctctta 13151509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 315
Target Start/End: Original strand, 1987179 - 1987227
Alignment:
Q  269 attcaacttttac--tctccaatggtttttcattcaacactctatccca 315  Q
    |||||||||||||  ||||||||| ||||||||||||||||||| ||||    
T  1987179 attcaacttttaccctctccaatgatttttcattcaacactctacccca 1987227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 315
Target Start/End: Complemental strand, 43495730 - 43495682
Alignment:
Q  269 attcaactttta--ctctccaatggtttttcattcaacactctatccca 315  Q
    ||||||||||||  |||||||||| ||||||||||||||||||| ||||    
T  43495730 attcaacttttatcctctccaatgatttttcattcaacactctacccca 43495682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 269
Target Start/End: Original strand, 6362924 - 6363002
Alignment:
Q  189 tacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    ||||||||| |||  |||| ||||||  ||||||||||| |||||||||| |||||| |  ||||||||||||||||||||    
T  6362924 tacaatggttaaacccattcaacaacggtcaacatccac-tttttcaatt-ccaacactctacatcattttctctctctta 6363002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 269
Target Start/End: Complemental strand, 7763552 - 7763512
Alignment:
Q  229 tttttcaattcccaacatttcacatcattttctctctctta 269  Q
    ||||||||||| ||||| | |||||||||||||||||||||    
T  7763552 tttttcaattctcaacactccacatcattttctctctctta 7763512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 310
Target Start/End: Complemental strand, 31174199 - 31174156
Alignment:
Q  269 attcaacttttac--tctccaatggtttttcattcaacactcta 310  Q
    |||||||||||||  || ||||||||||||||||||||||||||    
T  31174199 attcaacttttaccatccccaatggtttttcattcaacactcta 31174156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 269
Target Start/End: Original strand, 36526830 - 36526870
Alignment:
Q  229 tttttcaattcccaacatttcacatcattttctctctctta 269  Q
    ||||||||||||||||| | ||||| |||||||||||||||    
T  36526830 tttttcaattcccaacactccacattattttctctctctta 36526870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 262
Target Start/End: Complemental strand, 38997373 - 38997290
Alignment:
Q  178 attagacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctc 262  Q
    ||||||| ||||||||||||  ||||  || |||||| ||||||| |||| ||||||||||| |||||   ||||||||||||||    
T  38997373 attagaccatttacaatggttgaaaagtttcaacaaccttcaacacccac-tttttcaattcgcaacacaccacatcattttctc 38997290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 8e-28; HSPs: 36)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 181 - 316
Target Start/End: Original strand, 14278789 - 14278936
Alignment:
Q  181 agacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctt-----------a 269  Q
    |||| |||||||||||||||||||||| ||||||| |||||| ||| |||||||||||||||||| | ||||||||||||||||||||           |    
T  14278789 agaccatttacaatggtgaaaaacattcaacaacactcaacaccca-ttttttcaattcccaacactccacatcattttctctctcttattcaacattca 14278887  T
Q  270 ttcaactttta--ctctccaatggtttttcattcaacactctatcccat 316  Q
    |||||||||||  |||||||||||||||||||||||||||||| |||||    
T  14278888 ttcaacttttaccctctccaatggtttttcattcaacactctaccccat 14278936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 179 - 269
Target Start/End: Original strand, 27942449 - 27942538
Alignment:
Q  179 ttagacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||||| |||||||||||| ||| ||||| |||||| ||||||| |||| ||||||||| ||||||| | |||||||||||||||||||||    
T  27942449 ttagaccatttacaatggtaaaatacattcaacaaccttcaacacccac-tttttcaatccccaacactccacatcattttctctctctta 27942538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 179 - 269
Target Start/End: Original strand, 40888852 - 40888941
Alignment:
Q  179 ttagacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||||| |||||||||||| ||| ||||| || ||| ||||||| |||||||| ||||||||||||| | |||||||||||||||||||||    
T  40888852 ttagaccatttacaatggtaaaatacattcaataaccttcaacacccactttt-tcaattcccaacactccacatcattttctctctctta 40888941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 178 - 275
Target Start/End: Complemental strand, 42608158 - 42608062
Alignment:
Q  178 attagacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    ||||||| || ||||||||||||||||||| |||||||||||||||||  |||||||||||   |||| | ||| ||||||||||||| |||||||||    
T  42608158 attagaccatctacaatggtgaaaaacattcaacaacattcaacatcc-gttttttcaattattaacactccacgtcattttctctcttttattcaac 42608062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 8176392 - 8176321
Alignment:
Q  203 acattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    ||||| |||| ||||||||| ||||||||| |||||||||||| | |||||||||||||||||||||||||||    
T  8176392 acattcaacatcattcaacacccacttttt-caattcccaacactccacatcattttctctctcttattcaac 8176321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 181 - 269
Target Start/End: Original strand, 19241276 - 19241363
Alignment:
Q  181 agacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||| |||||||||||| ||| ||||| |||||| ||||||| |||||||| ||||||| ||||| | |||||||||||||||||||||    
T  19241276 agaccatttacaatggtaaaatacattcaacaaccttcaacacccactttt-tcaattctcaacactccacatcattttctctctctta 19241363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 181 - 269
Target Start/End: Complemental strand, 32976687 - 32976600
Alignment:
Q  181 agacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||| |||||||||||| ||| ||||| || ||| ||||||| ||||||||| |||||||||||| | |||||||||||||||||||||    
T  32976687 agaccatttacaatggtaaaatacattcaataaccttcaacacccacttttt-caattcccaacactccacatcattttctctctctta 32976600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 189 - 265
Target Start/End: Complemental strand, 37882532 - 37882457
Alignment:
Q  189 tacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctct 265  Q
    ||||||||||||||||||| |||||| ||||||| ||| |||||||||||||||||| | ||||||||||| |||||    
T  37882532 tacaatggtgaaaaacattcaacaacgttcaacaccca-ttttttcaattcccaacactccacatcattttttctct 37882457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 41153095 - 41153024
Alignment:
Q  203 acattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    ||||| ||||| |||||||||||| |||||||||||| ||||| | |||||||||||||||||||||||||||    
T  41153095 acattcaacaatattcaacatcca-ttttttcaattctcaacactccacatcattttctctctcttattcaac 41153024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 41263344 - 41263415
Alignment:
Q  203 acattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    ||||| |||| |||||||||||||||||| ||||||||||||  | |||||||||||||||||||||||||||    
T  41263344 acattcaacaccattcaacatccactttt-tcaattcccaacgctccacatcattttctctctcttattcaac 41263415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 220 - 315
Target Start/End: Original strand, 25652812 - 25652919
Alignment:
Q  220 acatccacttttttcaattcccaacatttcacatcattttctctctcttattcaac-----------ttttac--tctccaatggtttttcattcaacac 306  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||           ||||||  |||||||||||||||||||||||||    
T  25652812 acatccacttttt-caattcccaacacttcacatcattttctctctcttattcaacactcattgaatttttaccctctccaatggtttttcattcaacac 25652910  T
Q  307 tctatccca 315  Q
    |||| ||||    
T  25652911 tctacccca 25652919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 179 - 269
Target Start/End: Original strand, 7650961 - 7651050
Alignment:
Q  179 ttagacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||||| |||||||||||| ||| ||||| |||||| || |||| | | |||||||||||||||||| | |||||||||||||||||||||    
T  7650961 ttagaccatttacaatggtaaaatacattcaacaacctttaacaccta-ttttttcaattcccaacactccacatcattttctctctctta 7651050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 178 - 269
Target Start/End: Complemental strand, 27407157 - 27407067
Alignment:
Q  178 attagacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    ||||||| |||||||||||| | ||||||| |||||| || ||||  |||||||| |||||||||||| | ||||| |||||||||||||||    
T  27407157 attagaccatttacaatggtcacaaacattcaacaacctttaacactcacttttt-caattcccaacactccacattattttctctctctta 27407067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 269
Target Start/End: Complemental strand, 31008499 - 31008409
Alignment:
Q  179 ttagacaatttacaatggtgaaaaacattgaacaacattc-aacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||||| |||||||||||| ||| ||||| |||||| ||  |||| ||||||||| |||||| ||||| |||||||||||||||||||||||    
T  31008499 ttagaccatttacaatggtaaaatacattcaacaaccttataacacccacttttt-caattctcaacacttcacatcattttctctctctta 31008409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 229 - 315
Target Start/End: Original strand, 4577012 - 4577111
Alignment:
Q  229 tttttcaattcccaacatttcacatcattttctctctcttattcaac-----------ttttac--tctccaatggtttttcattcaacactctatccca 315  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||           ||||||  ||||||||||||||||||||||||||||| ||||    
T  4577012 tttttcaattcccaacactccacatcattttctctctcttattcaacactcattcaacttttaccctctccaatggtttttcattcaacactctacccca 4577111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 269
Target Start/End: Original strand, 42317848 - 42317935
Alignment:
Q  181 agacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||| |||||||||||| ||| | ||| |||||| |||||||| |||||||| ||||| |||||| | || ||||||||||||||||||    
T  42317848 agaccatttacaatggtaaaacaaattcaacaaccttcaacattcacttttt-caatttccaacactccatatcattttctctctctta 42317935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 269
Target Start/End: Complemental strand, 42807111 - 42807024
Alignment:
Q  181 agacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||| |||||||||||| | ||| ||| ||||||  |||||| ||||||||| |||||| ||||| | |||||||||||||||||||||    
T  42807111 agaccatttacaatggtcacaaatattcaacaaccctcaacacccacttttt-caattctcaacactccacatcattttctctctctta 42807024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 31013922 - 31013868
Alignment:
Q  214 cattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    ||||||||| ||||||||| |||||||||||| | |||||||||||||||||||||    
T  31013922 cattcaacacccacttttt-caattcccaacactccacatcattttctctctctta 31013868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 266
Target Start/End: Original strand, 23089513 - 23089562
Alignment:
Q  216 ttcaacatccacttttttcaattcccaacatttcacatcattttctctctc 266  Q
    ||||||| |||||||||| ||||||||||| ||||||||||||||||||||    
T  23089513 ttcaacacccactttttt-aattcccaacacttcacatcattttctctctc 23089562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 189 - 271
Target Start/End: Complemental strand, 34529485 - 34529404
Alignment:
Q  189 tacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctcttatt 271  Q
    |||||| ||| |||| ||| |||||||||||||| | |||||||| ||||| |||||  |||||||||||||||||| |||||    
T  34529485 tacaatagtggaaaatattcaacaacattcaacacctactttttt-aattctcaacacatcacatcattttctctcttttatt 34529404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 269 - 315
Target Start/End: Complemental strand, 10569823 - 10569775
Alignment:
Q  269 attcaacttttactctc--caatggtttttcattcaacactctatccca 315  Q
    |||||||||||||||||  ||||||||||||||||||||||||| ||||    
T  10569823 attcaacttttactctctccaatggtttttcattcaacactctacccca 10569775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 230 - 275
Target Start/End: Original strand, 25032361 - 25032406
Alignment:
Q  230 ttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    ||||||||| |||||| | |||||||||||||||||||||||||||    
T  25032361 ttttcaatttccaacactccacatcattttctctctcttattcaac 25032406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 266
Target Start/End: Complemental strand, 25671020 - 25670933
Alignment:
Q  178 attagacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctc 266  Q
    ||||||| || ||||||||| | |||  || || ||| ||||||| ||||||||| |||||||||||| | ||||||||||||||||||    
T  25671020 attagaccatgtacaatggttacaaattttcaataaccttcaacacccacttttt-caattcccaacactccacatcattttctctctc 25670933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 310
Target Start/End: Complemental strand, 27407757 - 27407714
Alignment:
Q  269 attcaacttttac--tctccaatggtttttcattcaacactcta 310  Q
    |||||||||||||  |||||||||||||||||||||||||||||    
T  27407757 attcaacttttaccctctccaatggtttttcattcaacactcta 27407714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 269
Target Start/End: Complemental strand, 30648224 - 30648137
Alignment:
Q  181 agacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||| |||||||||||| | ||||||| ||||||  |||||| |||| ||||||||||||| ||| | |||| |||||| |||||||||    
T  30648224 agaccatttacaatggtcacaaacattcaacaaccctcaacacccac-tttttcaattccctacactccacaccattttatctctctta 30648137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 216 - 271
Target Start/End: Complemental strand, 9274525 - 9274472
Alignment:
Q  216 ttcaacatccacttttttcaattcccaacatttcacatcattttctctctcttatt 271  Q
    ||||||||||||||||| |||||||||||| | ||||||||||| |||||||||||    
T  9274525 ttcaacatccacttttt-caattcccaacactccacatcatttt-tctctcttatt 9274472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 266
Target Start/End: Original strand, 3454731 - 3454780
Alignment:
Q  216 ttcaacatccacttttttcaattcccaacatttcacatcattttctctctc 266  Q
    |||||||||||||||| ||||||| ||||| | ||||||||||||||||||    
T  3454731 ttcaacatccactttt-tcaattctcaacactccacatcattttctctctc 3454780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 262
Target Start/End: Complemental strand, 4219517 - 4219472
Alignment:
Q  216 ttcaacatccacttttttcaattcccaacatttcacatcattttctc 262  Q
    ||||||| ||||||||| |||||||||||| ||||||||||||||||    
T  4219517 ttcaacacccacttttt-caattcccaacacttcacatcattttctc 4219472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 315
Target Start/End: Complemental strand, 8176302 - 8176268
Alignment:
Q  281 ctctccaatggtttttcattcaacactctatccca 315  Q
    |||||||||||||||||||||||||||||| ||||    
T  8176302 ctctccaatggtttttcattcaacactctacccca 8176268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 10569874 - 10569828
Alignment:
Q  229 tttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    ||||||||||||||||| | ||||||||||| | |||||||||||||    
T  10569874 tttttcaattcccaacactccacatcattttttgtctcttattcaac 10569828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 266
Target Start/End: Complemental strand, 13479900 - 13479851
Alignment:
Q  216 ttcaacatccacttttttcaattcccaacatttcacatcattttctctctc 266  Q
    ||||||| |||||||||| ||||||||||| | ||||||||||||||||||    
T  13479900 ttcaacacccactttttt-aattcccaacactccacatcattttctctctc 13479851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 275
Target Start/End: Original strand, 15972560 - 15972620
Alignment:
Q  214 cattcaacatccacttttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    |||| |||||||||||||| ||||| |||||| |  |||| |||||||||||||||||||||    
T  15972560 catttaacatccacttttt-caatttccaacaatcgacattattttctctctcttattcaac 15972620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 266
Target Start/End: Original strand, 39238421 - 39238458
Alignment:
Q  229 tttttcaattcccaacatttcacatcattttctctctc 266  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  39238421 tttttcaattcccaacactccacatcattttctctctc 39238458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 310
Target Start/End: Complemental strand, 8681301 - 8681258
Alignment:
Q  269 attcaacttttac--tctccaatggtttttcattcaacactcta 310  Q
    |||||||||||||  |||||||||||||||| ||||||||||||    
T  8681301 attcaacttttaccctctccaatggtttttctttcaacactcta 8681258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 207 - 275
Target Start/End: Complemental strand, 8681373 - 8681306
Alignment:
Q  207 tgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    |||| ||||||| ||||| ||||||| ||||| |||||| | || |||||||||||| |||||||||||    
T  8681373 tgaaaaacattcgacatcaacttttt-caatttccaacactccatatcattttctctttcttattcaac 8681306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 27420689 - 27420641
Alignment:
Q  181 agacaatttacaatggtgaaaaacattgaacaacattcaacatccactt 229  Q
    |||| |||||| ||||||||||||||| ||||||| |||||||| ||||    
T  27420689 agaccatttaccatggtgaaaaacattcaacaacactcaacatctactt 27420641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 61)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 189 - 274
Target Start/End: Complemental strand, 46573028 - 46572944
Alignment:
Q  189 tacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctcttattcaa 274  Q
    ||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||| | ||||||||||||||||||||||||||    
T  46573028 tacaatggtgaaaaacattcaacaacattcaacacccacttttt-caattcccaacactccacatcattttctctctcttattcaa 46572944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 181 - 269
Target Start/End: Original strand, 29701644 - 29701731
Alignment:
Q  181 agacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||| |||||||||||| ||| ||||| |||||| ||||||| |||||||| ||||||||||||| | |||||||||||||||||||||    
T  29701644 agaccatttacaatggtaaaatacattcaacaaccttcaacacccactttt-tcaattcccaacactccacatcattttctctctctta 29701731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 178 - 269
Target Start/End: Complemental strand, 50415944 - 50415854
Alignment:
Q  178 attagacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    ||||||| |||||||||||| ||| ||||| |||||| ||||||| |||| |||||||||| |||||| | |||||||||||||||||||||    
T  50415944 attagaccatttacaatggtaaaatacattcaacaaccttcaacacccac-tttttcaatttccaacactccacatcattttctctctctta 50415854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 179 - 269
Target Start/End: Original strand, 44084269 - 44084358
Alignment:
Q  179 ttagacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||||| |||||||||||| ||| | ||| |||||| ||||||| |||||||| ||||||||||||| | |||||||||||||||||||||    
T  44084269 ttagaccatttacaatggtaaaacaaattcaacaaccttcaacacccactttt-tcaattcccaacactccacatcattttctctctctta 44084358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 181 - 269
Target Start/End: Complemental strand, 30418540 - 30418453
Alignment:
Q  181 agacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||| |||||||||||| ||| ||||| || ||| ||||||| ||||||||| |||||||||||| | |||||||||||||||||||||    
T  30418540 agaccatttacaatggtaaaatacattcaataaccttcaacacccacttttt-caattcccaacactccacatcattttctctctctta 30418453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 181 - 269
Target Start/End: Complemental strand, 32120549 - 32120462
Alignment:
Q  181 agacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||| |||||||||||| ||| | ||| |||||| ||||||| ||||||||| |||||||||||| | |||||||||||||||||||||    
T  32120549 agaccatttacaatggtaaaacaaattcaacaaccttcaacacccacttttt-caattcccaacactccacatcattttctctctctta 32120462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 181 - 269
Target Start/End: Original strand, 43473852 - 43473939
Alignment:
Q  181 agacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||| |||||||||||| ||| | ||| ||||||  ||||||||||||||| ||||||||||||||| || ||||||||||||||||||    
T  43473852 agaccatttacaatggttaaacatattcaacaaccctcaacatccactttt-tcaattcccaacattccagatcattttctctctctta 43473939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 204 - 275
Target Start/End: Complemental strand, 25832811 - 25832742
Alignment:
Q  204 cattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    |||| |||| ||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  25832811 cattcaacaccattcaaca-ccacttttt-caattcccaacacttcacatcattttctctctcttattcaac 25832742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 179 - 269
Target Start/End: Complemental strand, 6048809 - 6048720
Alignment:
Q  179 ttagacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||||| |||||||||||| |  || ||| |||||| ||||||| ||||||||| |||||||||||| | |||||||||||||||||||||    
T  6048809 ttagaccatttacaatggtaactaatattcaacaaccttcaacacccacttttt-caattcccaacactccacatcattttctctctctta 6048720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 179 - 269
Target Start/End: Original strand, 20139320 - 20139409
Alignment:
Q  179 ttagacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||||| || ||||||||| |||| |||| ||||||| |||| | |||||||| ||||||| ||||| |||||||||||||||||||||||    
T  20139320 ttagaccatctacaatggttaaaaccattcaacaacactcaatacccactttt-tcaattctcaacacttcacatcattttctctctctta 20139409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 209 - 275
Target Start/End: Original strand, 42601751 - 42601816
Alignment:
Q  209 aacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    |||| ||||||||| |||||||| ||||||||||||| | |||||||||||||||||||||||||||    
T  42601751 aacaccattcaacacccactttt-tcaattcccaacactccacatcattttctctctcttattcaac 42601816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 179 - 269
Target Start/End: Complemental strand, 51999350 - 51999261
Alignment:
Q  179 ttagacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||||| |||||||||||  ||| | ||| |||||| ||||||| ||||||||| |||||||||||| | |||||||||||||||||||||    
T  51999350 ttagaccatttacaatggcaaaatatattcaacaaccttcaacacccacttttt-caattcccaacactccacatcattttctctctctta 51999261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 214 - 275
Target Start/End: Complemental strand, 35424087 - 35424027
Alignment:
Q  214 cattcaacatccacttttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    ||||||||||||| |||||||||||||||||| | ||||||||||| |||||||||||||||    
T  35424087 cattcaacatcca-ttttttcaattcccaacactccacatcattttttctctcttattcaac 35424027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 189 - 269
Target Start/End: Original strand, 138945 - 139024
Alignment:
Q  189 tacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    ||||||||| |||| |||| ||||||| ||||||||| ||||| ||||||||||||| | ||||||||||| |||||||||    
T  138945 tacaatggttaaaaccattcaacaacactcaacatccgctttt-tcaattcccaacactccacatcattttgtctctctta 139024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 209 - 269
Target Start/End: Original strand, 4045970 - 4046029
Alignment:
Q  209 aacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||||| |||||||||||||||| ||||||||||||| | |||||||||||||||||||||    
T  4045970 aacaaccttcaacatccactttt-tcaattcccaacactccacatcattttctctctctta 4046029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 209 - 269
Target Start/End: Original strand, 42560891 - 42560950
Alignment:
Q  209 aacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||||| ||||||| |||||||| ||||||||||||||| |||||||||||||||||||||    
T  42560891 aacaaccttcaacacccactttt-tcaattcccaacattccacatcattttctctctctta 42560950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 186 - 269
Target Start/End: Original strand, 41183241 - 41183323
Alignment:
Q  186 atttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||||||||||| | ||| ||| ||||||  |||||| |||||||| ||||||||||||| | |||||||||||||||||||||    
T  41183241 atttacaatggtcacaaatattcaacaaccctcaacacccactttt-tcaattcccaacactccacatcattttctctctctta 41183323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 204 - 315
Target Start/End: Original strand, 41890520 - 41890642
Alignment:
Q  204 cattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctcttattcaac-----------ttttac--tctccaatg 290  Q
    |||| |||| ||||||||||| ||||||| |||||||||||| | |||||||||||||||||||||||||||           ||||||  |||||||||    
T  41890520 cattcaacaccattcaacatc-acttttt-caattcccaacactccacatcattttctctctcttattcaacactcattcaacttttaccctctccaatg 41890617  T
Q  291 gtttttcattcaacactctatccca 315  Q
    |||||||||||||||||||| ||||    
T  41890618 gtttttcattcaacactctacccca 41890642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 216 - 275
Target Start/End: Complemental strand, 49147364 - 49147306
Alignment:
Q  216 ttcaacatccacttttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    ||||||||| ||||||| |||||||||||| | |||||||||||||||||||||||||||    
T  49147364 ttcaacatctacttttt-caattcccaacactccacatcattttctctctcttattcaac 49147306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 213 - 275
Target Start/End: Complemental strand, 25450713 - 25450652
Alignment:
Q  213 acattcaacatccacttttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    |||||||||| ||| |||||||||||||||||  | |||||||||||||||||||||||||||    
T  25450713 acattcaacaccca-ttttttcaattcccaacgctccacatcattttctctctcttattcaac 25450652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 228 - 310
Target Start/End: Complemental strand, 26550186 - 26550105
Alignment:
Q  228 ttttttcaattcccaacatttcacatcattttctctctcttattcaactttta--ctctccaatggtttttcattcaacactcta 310  Q
    ||||||||||| ||| || | |||||||||||||  |||||||||||||||||  ||||||||||| ||||||||||||||||||    
T  26550186 ttttttcaatttccaccactccacatcattttct--ctcttattcaacttttaccctctccaatgg-ttttcattcaacactcta 26550105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 229 - 275
Target Start/End: Original strand, 33935000 - 33935046
Alignment:
Q  229 tttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||    
T  33935000 tttttcaattcccaacactccacatcattttctctctcttattcaac 33935046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 42601569 - 42601523
Alignment:
Q  229 tttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||    
T  42601569 tttttcaattcccaacactccacatcattttctctctcttattcaac 42601523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 49823234 - 49823188
Alignment:
Q  229 tttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||    
T  49823234 tttttcaattcccaacactccacatcattttctctctcttattcaac 49823188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 209 - 275
Target Start/End: Original strand, 50033657 - 50033722
Alignment:
Q  209 aacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    |||| |||||||||||||||||||| |||| ||||||||  |||||||||| |||||||||||||||    
T  50033657 aacaccattcaacatccactttttt-aatttccaacattctacatcattttttctctcttattcaac 50033722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 229 - 275
Target Start/End: Original strand, 51427109 - 51427155
Alignment:
Q  229 tttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||    
T  51427109 tttttcaattcccaacactccacatcattttctctctcttattcaac 51427155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 269 - 315
Target Start/End: Original strand, 33748745 - 33748793
Alignment:
Q  269 attcaacttttac--tctccaatggtttttcattcaacactctatccca 315  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||    
T  33748745 attcaacttttaccttctccaatggtttttcattcaacactctatccca 33748793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 17466510 - 17466564
Alignment:
Q  214 cattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    ||||||||| |||||||| ||||||||||||| | |||||||||||||||||||||    
T  17466510 cattcaacacccactttt-tcaattcccaacactccacatcattttctctctctta 17466564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 47144168 - 47144222
Alignment:
Q  214 cattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    ||||||||| |||||||| ||||||||||||| | |||||||||||||||||||||    
T  47144168 cattcaacacccactttt-tcaattcccaacactccacatcattttctctctctta 47144222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 275
Target Start/End: Complemental strand, 49357565 - 49357515
Alignment:
Q  224 ccacttttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    |||||||||| |||||| ||||||||| ||||||||||||||||||||||||    
T  49357565 ccactttttt-aattcctaacatttcatatcattttctctctcttattcaac 49357515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 228 - 275
Target Start/End: Complemental strand, 50176150 - 50176103
Alignment:
Q  228 ttttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    |||||||||||||||||| | ||||||||||| |||||||||||||||    
T  50176150 ttttttcaattcccaacactccacatcattttatctctcttattcaac 50176103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 269
Target Start/End: Original strand, 7008015 - 7008104
Alignment:
Q  179 ttagacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||||| |||||||||||| ||| | ||| ||||||  |||||| ||||||||| ||||| |||||| |  ||||||||||||||||||||    
T  7008015 ttagaccatttacaatggtaaaacaaattcaacaaccctcaacacccacttttt-caatttccaacactctacatcattttctctctctta 7008104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 7521201 - 7521155
Alignment:
Q  229 tttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    |||||||||| |||||| |||| ||||||||||||||||||||||||    
T  7521201 tttttcaatttccaacacttcagatcattttctctctcttattcaac 7521155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 265
Target Start/End: Complemental strand, 10426544 - 10426459
Alignment:
Q  179 ttagacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctct 265  Q
    |||||| ||||| |||||  ||| | ||| |||||| ||||||| ||| |||||||||||||||||| | |||||||||||||||||    
T  10426544 ttagactatttataatggcaaaatatattcaacaaccttcaacaccca-ttttttcaattcccaacactccacatcattttctctct 10426459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 268
Target Start/End: Complemental strand, 25790853 - 25790800
Alignment:
Q  214 cattcaacatccacttttttcaattcccaacatttcacatcattttctctctctt 268  Q
    ||||||||| ||||||||| |||||||||||| | ||||||||||||||||||||    
T  25790853 cattcaacacccacttttt-caattcccaacactccacatcattttctctctctt 25790800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 266
Target Start/End: Complemental strand, 26165630 - 26165581
Alignment:
Q  216 ttcaacatccacttttttcaattcccaacatttcacatcattttctctctc 266  Q
    ||||||||||||||||| |||||||||||| | ||||||||||||||||||    
T  26165630 ttcaacatccacttttt-caattcccaacactccacatcattttctctctc 26165581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 37410483 - 37410437
Alignment:
Q  229 tttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    ||||||||||||||| | | |||||||||||||||||||||||||||    
T  37410483 tttttcaattcccaatactccacatcattttctctctcttattcaac 37410437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 269
Target Start/End: Original strand, 55026699 - 55026788
Alignment:
Q  179 ttagacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||||| |||||||||||| ||| | ||| ||||||  |||||| ||| |||||||||||  ||||| ||||| |||||||||||||||||    
T  55026699 ttagactatttacaatggtaaaataaattcaacaaccctcaacaccca-ttttttcaattttcaacacttcacttcattttctctctctta 55026788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 12974665 - 12974717
Alignment:
Q  216 ttcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    ||||||| |||||||| ||||||||||||| | |||||||||||||||||||||    
T  12974665 ttcaacacccactttt-tcaattcccaacactccacatcattttctctctctta 12974717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 275
Target Start/End: Complemental strand, 47701176 - 47701080
Alignment:
Q  179 ttagacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatca-ttttctctctcttattcaac 275  Q
    |||||| || ||||||||| |||| || | ||||||| |||||| ||||||||| |||||| ||||| | ||||||| |||| |||||||||||||||    
T  47701176 ttagaccatatacaatggttaaaaccaatcaacaacactcaacacccacttttt-caattctcaacactccacatcatttttttctctcttattcaac 47701080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 275
Target Start/End: Original strand, 50017048 - 50017108
Alignment:
Q  214 cattcaacatccacttttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    ||||||| |||||||||| ||||||||||||| |  |||||||||||||| |||||||||||    
T  50017048 cattcaaaatccactttt-tcaattcccaacactctacatcattttctctttcttattcaac 50017108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 27847407 - 27847458
Alignment:
Q  217 tcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||||||||||||||| ||||| |||||| | |||||||||||||||||||||    
T  27847407 tcaacatccacttttt-caatttccaacactccacatcattttctctctctta 27847458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 269
Target Start/End: Original strand, 50733978 - 50734065
Alignment:
Q  181 agacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||| |||||||||||| ||| | ||| |||||   |||||||||||||||| ||||| |||| | | |||||||||||||||||||||    
T  50733978 agaccatttacaatggtaaaatatattcaacaatcctcaacatccacttttt-caatttccaaaactccacatcattttctctctctta 50734065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 269
Target Start/End: Complemental strand, 50778877 - 50778790
Alignment:
Q  181 agacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||| |||||||||||| ||| | ||| |||||   |||||||||||||||| ||||| |||| | | |||||||||||||||||||||    
T  50778877 agaccatttacaatggtaaaatatattcaacaatcctcaacatccacttttt-caatttccaaaactccacatcattttctctctctta 50778790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 5845218 - 5845164
Alignment:
Q  214 cattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    ||||||||| ||||||||| |||||||||||| | ||||||||||| |||||||||    
T  5845218 cattcaacacccacttttt-caattcccaacactccacatcattttatctctctta 5845164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 199 - 266
Target Start/End: Complemental strand, 36178797 - 36178731
Alignment:
Q  199 aaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctc 266  Q
    ||||| ||| |||| | ||||||| ||||||||| |||||||||||| |||| |||||||||||||||    
T  36178797 aaaaaaattcaacacccttcaacacccacttttt-caattcccaacacttcaaatcattttctctctc 36178731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 307
Target Start/End: Original strand, 53722450 - 53722492
Alignment:
Q  267 ttattcaacttttactct--ccaatggtttttcattcaacact 307  Q
    ||||||||||||||||||  |||||||||||||||||||||||    
T  53722450 ttattcaacttttactctctccaatggtttttcattcaacact 53722492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 266
Target Start/End: Complemental strand, 35472702 - 35472653
Alignment:
Q  216 ttcaacatccacttttttcaattcccaacatttcacatcattttctctctc 266  Q
    ||||||||||||||||| |||||||||||| | ||||| ||||||||||||    
T  35472702 ttcaacatccacttttt-caattcccaacactccacattattttctctctc 35472653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 275
Target Start/End: Complemental strand, 35853248 - 35853210
Alignment:
Q  237 ttcccaacatttcacatcattttctctctcttattcaac 275  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  35853248 ttcccaacactccacatcattttctctctcttattcaac 35853210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 269
Target Start/End: Complemental strand, 37183950 - 37183861
Alignment:
Q  179 ttagacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||||| |||||||||||  ||| | ||| ||||||  ||||||  |||||||| ||||||| |||| | |||||||||||||||||||||    
T  37183950 ttagaccatttacaatggcaaaatatattcaacaaccctcaacactcacttttt-caattcctaacactccacatcattttctctctctta 37183861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 315
Target Start/End: Complemental strand, 37410418 - 37410384
Alignment:
Q  281 ctctccaatggtttttcattcaacactctatccca 315  Q
    |||||||||||||||||||||||||||||| ||||    
T  37410418 ctctccaatggtttttcattcaacactctacccca 37410384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 315
Target Start/End: Complemental strand, 42601504 - 42601470
Alignment:
Q  281 ctctccaatggtttttcattcaacactctatccca 315  Q
    |||||||||||||||||||||||||||||| ||||    
T  42601504 ctctccaatggtttttcattcaacactctacccca 42601470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 275
Target Start/End: Original strand, 43022665 - 43022703
Alignment:
Q  237 ttcccaacatttcacatcattttctctctcttattcaac 275  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  43022665 ttcccaacactccacatcattttctctctcttattcaac 43022703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 275
Target Start/End: Complemental strand, 49710445 - 49710407
Alignment:
Q  237 ttcccaacatttcacatcattttctctctcttattcaac 275  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  49710445 ttcccaacactccacatcattttctctctcttattcaac 49710407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 269
Target Start/End: Original strand, 744224 - 744265
Alignment:
Q  228 ttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    ||||||||||| |||||| | |||||||||||||||||||||    
T  744224 ttttttcaattaccaacactccacatcattttctctctctta 744265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 315
Target Start/End: Complemental strand, 15493835 - 15493787
Alignment:
Q  269 attcaacttttac--tctccaatggtttttcattcaacactctatccca 315  Q
    |||||||||||||  ||||||||| ||||||||||||||||||| ||||    
T  15493835 attcaacttttaccatctccaatgatttttcattcaacactctacccca 15493787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #57
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 315
Target Start/End: Complemental strand, 49823168 - 49823135
Alignment:
Q  282 tctccaatggtttttcattcaacactctatccca 315  Q
    ||||||||||||||||||||||||||||| ||||    
T  49823168 tctccaatggtttttcattcaacactctacccca 49823135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #58
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 261
Target Start/End: Original strand, 6832382 - 6832425
Alignment:
Q  217 tcaacatccacttttttcaattcccaacatttcacatcattttct 261  Q
    ||||||||||||||| ||||||||||||| | |||||||||||||    
T  6832382 tcaacatccactttt-tcaattcccaacactccacatcattttct 6832425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #59
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 310
Target Start/End: Complemental strand, 33795508 - 33795465
Alignment:
Q  269 attcaacttttactctc--caatggtttttcattcaacactcta 310  Q
    |||||||||||||||||  |||| ||||||||||||||||||||    
T  33795508 attcaacttttactctcttcaatagtttttcattcaacactcta 33795465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #60
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 275
Target Start/End: Complemental strand, 33795575 - 33795513
Alignment:
Q  209 aacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    |||| |||||||||||||||||||| ||||||||||| |   | ||||||||||| |||||||||||    
T  33795575 aacaccattcaacatccactttttt-aattcccaacaat---cctcattttctctttcttattcaac 33795513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #61
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 310
Target Start/End: Original strand, 42601836 - 42601864
Alignment:
Q  282 tctccaatggtttttcattcaacactcta 310  Q
    |||||||||||||||||||||||||||||    
T  42601836 tctccaatggtttttcattcaacactcta 42601864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 181 - 269
Target Start/End: Complemental strand, 34199380 - 34199293
Alignment:
Q  181 agacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||| |||||||||||| ||| ||||| |||||| ||||||||||||||||| |||||||||||| | |||||||||||||||||||||    
T  34199380 agaccatttacaatggtaaaatacattcaacaaccttcaacatccacttttt-caattcccaacactccacatcattttctctctctta 34199293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 179 - 275
Target Start/End: Complemental strand, 39113868 - 39113773
Alignment:
Q  179 ttagacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    |||||| |||||||||||||||||||||| ||||||| ||||||   ||||||| |||||||||||| | ||||||||||||||||| |||||||||    
T  39113868 ttagaccatttacaatggtgaaaaacattcaacaacactcaacactaacttttt-caattcccaacactccacatcattttctctcttttattcaac 39113773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 181 - 269
Target Start/End: Original strand, 6290561 - 6290648
Alignment:
Q  181 agacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||| |||||||||||| ||| ||||| |||||| ||||||| |||||||| ||||||||||||| | |||||||||||||||||||||    
T  6290561 agaccatttacaatggtaaaatacattcaacaaccttcaacacccactttt-tcaattcccaacactccacatcattttctctctctta 6290648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 179 - 269
Target Start/End: Complemental strand, 3618566 - 3618477
Alignment:
Q  179 ttagacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||||| |||||||||||| ||| | ||| |||||| ||||||| ||||||||| |||||||||||| | |||||||||||||||||||||    
T  3618566 ttagaccatttacaatggtaaaacaaattcaacaaccttcaacacccacttttt-caattcccaacactccacatcattttctctctctta 3618477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 179 - 269
Target Start/End: Original strand, 40720994 - 40721083
Alignment:
Q  179 ttagacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||||| ||||| |||||| ||| ||||| ||||| |||||||| |||||||| ||||||||||||| | |||||||||||||||||||||    
T  40720994 ttagaccatttataatggtaaaatacattcaacaatattcaacacccactttt-tcaattcccaacactccacatcattttctctctctta 40721083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 181 - 269
Target Start/End: Complemental strand, 3533418 - 3533331
Alignment:
Q  181 agacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||| |||||||||||| | ||| ||| |||||| ||||||| ||||||||| |||||||||||| | |||||||||||||||||||||    
T  3533418 agaccatttacaatggtaacaaatattcaacaaccttcaacacccacttttt-caattcccaacactccacatcattttctctctctta 3533331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 178 - 269
Target Start/End: Original strand, 8991741 - 8991831
Alignment:
Q  178 attagacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    ||||||| |||||||||||| | | ||||| |||||| ||||||| |||||||||  ||||||||||| | |||||||||||||||||||||    
T  8991741 attagaccatttacaatggtaatatacattcaacaaccttcaacacccactttttg-aattcccaacactccacatcattttctctctctta 8991831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 179 - 269
Target Start/End: Original strand, 28899291 - 28899380
Alignment:
Q  179 ttagacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||||| |||||||||||| ||| ||||| ||||||  |||||| |||||||| ||||||||||| ||| |||||| ||||||||||||||    
T  28899291 ttagaccatttacaatggttaaacacattcaacaaccctcaacacccactttt-tcaattcccaatattccacatcgttttctctctctta 28899380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 179 - 269
Target Start/End: Original strand, 33523229 - 33523318
Alignment:
Q  179 ttagacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||||| ||||||||||||  ||||  || || |||  ||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  33523229 ttagaccatttacaatggttgaaaattttcaataaccctcaacatccactttt-tcaattcccaacattccacatcattttctctctctta 33523318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 53184160 - 53184114
Alignment:
Q  229 tttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  53184160 tttttcaattcccaacacttcacatcattttctctctcttattcaac 53184114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 181 - 269
Target Start/End: Original strand, 56053978 - 56054065
Alignment:
Q  181 agacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||| |||||||||||| ||| | ||| ||||||  | ||||||||||||| ||||||||||||| | |||||||||||||||||||||    
T  56053978 agaccatttacaatggttaaacatattcaacaacccttaacatccactttt-tcaattcccaacactccacatcattttctctctctta 56054065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 186 - 269
Target Start/End: Original strand, 38173521 - 38173603
Alignment:
Q  186 atttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||||||||||| | ||| ||| ||||||  |||||| |||||||| ||||||||||||| | |||||||||||||||||||||    
T  38173521 atttacaatggtcacaaatattcaacaaccctcaacacccactttt-tcaattcccaacactccacatcattttctctctctta 38173603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 216 - 275
Target Start/End: Complemental strand, 54356972 - 54356914
Alignment:
Q  216 ttcaacatccacttttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    ||||||||||||||||| |||||||||||| | ||||||||||||| |||||||||||||    
T  54356972 ttcaacatccacttttt-caattcccaacactccacatcattttctttctcttattcaac 54356914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 216 - 266
Target Start/End: Original strand, 35809159 - 35809208
Alignment:
Q  216 ttcaacatccacttttttcaattcccaacatttcacatcattttctctctc 266  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  35809159 ttcaacatccactttt-tcaattcccaacattccacatcattttctctctc 35809208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 179 - 269
Target Start/End: Complemental strand, 48506719 - 48506630
Alignment:
Q  179 ttagacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||||| |||||||||||| ||| | ||| ||||||  |||||||||||| |||||||||  ||||| | |||||||||||||||||||||    
T  48506719 ttagaccatttacaatggtaaaacaaattcaacaaccctcaacatccact-ttttcaattttcaacactccacatcattttctctctctta 48506630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 269
Target Start/End: Complemental strand, 23540537 - 23540450
Alignment:
Q  181 agacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||| |||||||||||| ||| | ||| |||||| ||||||| ||||||||| ||||| |||||| |  ||||||||||||||||||||    
T  23540537 agactatttacaatggttaaacatattcaacaaccttcaacacccacttttt-caatttccaacactcaacatcattttctctctctta 23540450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 266 - 315
Target Start/End: Complemental strand, 40596778 - 40596727
Alignment:
Q  266 cttattcaacttttactctc--caatggtttttcattcaacactctatccca 315  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||| ||||    
T  40596778 cttattcaacttttactctctccaatggtttttcattcaacactctacccca 40596727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 55560554 - 55560503
Alignment:
Q  217 tcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||||||||||||||| |||||||||||| | |||||||||||||||||||||    
T  55560554 tcaacatccacttttt-caattcccaacactccacatcattttctctctctta 55560503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 216 - 275
Target Start/End: Original strand, 12158134 - 12158192
Alignment:
Q  216 ttcaacatccacttttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    |||||||||||| |||| | |||||||||| | |||||||||||||||||||||||||||    
T  12158134 ttcaacatccacatttt-cgattcccaacactccacatcattttctctctcttattcaac 12158192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 228 - 275
Target Start/End: Complemental strand, 31848839 - 31848792
Alignment:
Q  228 ttttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    ||||||||||| |||||| | |||||||||||||||||||||||||||    
T  31848839 ttttttcaatttccaacactccacatcattttctctctcttattcaac 31848792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 216 - 275
Target Start/End: Complemental strand, 39049159 - 39049101
Alignment:
Q  216 ttcaacatccacttttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    |||||||||||||||||| |||| |||||| | ||||||||||||||| |||||||||||    
T  39049159 ttcaacatccactttttt-aatttccaacactccacatcattttctctttcttattcaac 39049101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 46917589 - 46917535
Alignment:
Q  214 cattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    ||||||||| ||||||||| |||||||||||| | |||||||||||||||||||||    
T  46917589 cattcaacacccacttttt-caattcccaacactccacatcattttctctctctta 46917535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 204 - 275
Target Start/End: Complemental strand, 47750312 - 47750243
Alignment:
Q  204 cattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    |||| |||| ||||||||||||||||||| ||||||||| || | ||| |||||||||||||||||||||||    
T  47750312 cattcaacaccattcaacatccacttttt-caattccca-cactccacgtcattttctctctcttattcaac 47750243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 34464100 - 34464047
Alignment:
Q  215 attcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||||||| | |||||||| |||| ||||||||||||||||||||||||||||||    
T  34464100 attcaacaccaactttttt-aatttccaacatttcacatcattttctctctctta 34464047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 53348134 - 53348086
Alignment:
Q  219 aacatccacttttttcaattcccaacatttcacatcattttctctctctt 268  Q
    |||||||||||||| |||||  ||||||||||||||||||||||||||||    
T  53348134 aacatccacttttt-caattatcaacatttcacatcattttctctctctt 53348086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 269
Target Start/End: Original strand, 16020836 - 16020895
Alignment:
Q  209 aacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||||| ||||||| |||||||| ||||||||||||| | ||||| |||||||||||||||    
T  16020836 aacaaccttcaacacccactttt-tcaattcccaacactccacattattttctctctctta 16020895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 316
Target Start/End: Complemental strand, 39418334 - 39418283
Alignment:
Q  267 ttattcaacttttactctc--caatggtttttcattcaacactctatcccat 316  Q
    |||||||| ||||||||||  |||| ||||||||||||||||||||||||||    
T  39418334 ttattcaatttttactctcttcaatagtttttcattcaacactctatcccat 39418283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 2215360 - 2215306
Alignment:
Q  214 cattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    ||||||||| ||||||||| |||||||||||| | ||||| |||||||||||||||    
T  2215360 cattcaacacccacttttt-caattcccaacactccacataattttctctctctta 2215306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 269 - 315
Target Start/End: Complemental strand, 18469379 - 18469332
Alignment:
Q  269 attcaacttttac-tctccaatggtttttcattcaacactctatccca 315  Q
    |||||| |||||| ||||||||||||||||||||||||||||| ||||    
T  18469379 attcaatttttacctctccaatggtttttcattcaacactctacccca 18469332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 186 - 265
Target Start/End: Complemental strand, 33077979 - 33077901
Alignment:
Q  186 atttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctct 265  Q
    |||||||||||| ||| | ||| ||||||  |||| ||||||||||| ||||| |||||| | |||||||||||||||||    
T  33077979 atttacaatggtaaaacaaattcaacaaccctcaatatccacttttt-caatttccaacactccacatcattttctctct 33077901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 266
Target Start/End: Original strand, 4981505 - 4981554
Alignment:
Q  216 ttcaacatccacttttttcaattcccaacatttcacatcattttctctctc 266  Q
    ||||||| |||||||| ||||||||||||| | ||||||||||||||||||    
T  4981505 ttcaacacccactttt-tcaattcccaacactccacatcattttctctctc 4981554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 266
Target Start/End: Complemental strand, 13094455 - 13094417
Alignment:
Q  228 ttttttcaattcccaacatttcacatcattttctctctc 266  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  13094455 ttttttcaattcccaacactccacatcattttctctctc 13094417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 269
Target Start/End: Original strand, 13110520 - 13110609
Alignment:
Q  179 ttagacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||||| |||||||||||| | ||| ||| ||||||  | |||| |||||||| ||||||||||||| | |||| |||||| |||||||||    
T  13110520 ttagaccatttacaatggtcacaaatattcaacaacgcttaacacccactttt-tcaattcccaacactccacaacattttttctctctta 13110609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 266
Target Start/End: Complemental strand, 17329988 - 17329940
Alignment:
Q  216 ttcaacatccacttttttcaattcccaacatttcacatcattttctctctc 266  Q
    ||||||||||||||||| ||||||| |||||| ||||||||||||||||||    
T  17329988 ttcaacatccacttttt-caattcc-aacattccacatcattttctctctc 17329940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 315
Target Start/End: Complemental strand, 31848773 - 31848739
Alignment:
Q  281 ctctccaatggtttttcattcaacactctatccca 315  Q
    |||||||||||||||||||||||||||||| ||||    
T  31848773 ctctccaatggtttttcattcaacactctacccca 31848739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 266
Target Start/End: Complemental strand, 45081488 - 45081439
Alignment:
Q  216 ttcaacatccacttttttcaattcccaacatttcacatcattttctctctc 266  Q
    ||||||| ||||||||| |||||||||||| | ||||||||||||||||||    
T  45081488 ttcaacacccacttttt-caattcccaacactccacatcattttctctctc 45081439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 315
Target Start/End: Complemental strand, 53184095 - 53184061
Alignment:
Q  281 ctctccaatggtttttcattcaacactctatccca 315  Q
    |||||||||||||||||||||||||||||| ||||    
T  53184095 ctctccaatggtttttcattcaacactctacccca 53184061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 278
Target Start/End: Complemental strand, 55979 - 55930
Alignment:
Q  229 tttttcaattcccaacatttcacatcattttctctctcttattcaacttt 278  Q
    |||||||||| |||||| | | ||||||||||| ||||||||||||||||    
T  55979 tttttcaatttccaacactccgcatcattttctttctcttattcaacttt 55930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 315
Target Start/End: Original strand, 10089906 - 10089954
Alignment:
Q  269 attcaacttttac--tctccaatggtttttcattcaacactctatccca 315  Q
    |||||||||||||  ||||||||| ||||||||||||||||||| ||||    
T  10089906 attcaacttttaccctctccaatgatttttcattcaacactctacccca 10089954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 266
Target Start/End: Original strand, 19272791 - 19272828
Alignment:
Q  229 tttttcaattcccaacatttcacatcattttctctctc 266  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  19272791 tttttcaattcccaacactccacatcattttctctctc 19272828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 269
Target Start/End: Original strand, 33604665 - 33604705
Alignment:
Q  229 tttttcaattcccaacatttcacatcattttctctctctta 269  Q
    ||||||||||||||||| | ||||||||||||||| |||||    
T  33604665 tttttcaattcccaacactccacatcattttctctatctta 33604705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 275
Target Start/End: Original strand, 34564119 - 34564178
Alignment:
Q  215 attcaacatccacttttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    |||||||||||| |||||| ||||| ||||| || | || |||||||||||||||||||||    
T  34564119 attcaacatccattttttt-aattctcaacactttatattattttctctctcttattcaac 34564178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 179 - 269
Target Start/End: Complemental strand, 47159607 - 47159519
Alignment:
Q  179 ttagacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||||| |||||||||||| ||| ||||| |||||| |||||||||||||||||  ||||||||||| | |||||||||||||||||||||    
T  47159607 ttagaccatttacaatggtaaaatacattcaacaaccttcaacatccacttttt--aattcccaacactccacatcattttctctctctta 47159519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 179 - 269
Target Start/End: Original strand, 36518474 - 36518563
Alignment:
Q  179 ttagacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||||| |||||||||||| ||| ||||| || ||| ||||||| |||||||| ||||||||||||| | |||||||||||||||||||||    
T  36518474 ttagaccatttacaatggtaaaatacattcaataaccttcaacacccactttt-tcaattcccaacactccacatcattttctctctctta 36518563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 209 - 275
Target Start/End: Complemental strand, 22737678 - 22737613
Alignment:
Q  209 aacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    |||| ||||||||| ||||||||| |||||||||||| | |||||||||||||||||||||||||||    
T  22737678 aacagcattcaacacccacttttt-caattcccaacactccacatcattttctctctcttattcaac 22737613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 186 - 269
Target Start/End: Original strand, 37887813 - 37887895
Alignment:
Q  186 atttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||||||||||| ||| | ||| |||||  ||||||||||| |||||||||||||||||| | ||||||||||| |||||||||    
T  37887813 atttacaatggtaaaataaattcaacaatcttcaacatcca-ttttttcaattcccaacactccacatcattttatctctctta 37887895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 209 - 315
Target Start/End: Complemental strand, 25218891 - 25218773
Alignment:
Q  209 aacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctcttattc-----------aactttta--ctctccaatggtttt 295  Q
    |||| |||| |||||||||||||| ||||| |||||| |||| |||||||||||||||||||||           ||||||||  |||||||||||||||    
T  25218891 aacaccatttaacatccacttttt-caatttccaacacttcatatcattttctctctcttattcaatactcatttaacttttaccctctccaatggtttt 25218793  T
Q  296 tcattcaacactctatccca 315  Q
    ||||||||||||||| ||||    
T  25218792 tcattcaacactctacccca 25218773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 269
Target Start/End: Complemental strand, 28318126 - 28318067
Alignment:
Q  209 aacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||||| || ||||||||||||||| ||||||||||| | |||||||||||||||||||||    
T  28318126 aacaacctttaacatccactttttt-aattcccaacactccacatcattttctctctctta 28318067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 269
Target Start/End: Complemental strand, 33078896 - 33078809
Alignment:
Q  181 agacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||| |||||||||||| ||| | ||| ||||||  |||||||||||||||| |||||||||||| | ||| | |||||||||||||||    
T  33078896 agaccatttacaatggttaaacatattcaacaaccctcaacatccacttttt-caattcccaacactccacgttattttctctctctta 33078809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 229 - 269
Target Start/End: Complemental strand, 35029173 - 35029133
Alignment:
Q  229 tttttcaattcccaacatttcacatcattttctctctctta 269  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  35029173 tttttcaattcccaacattccacatcattttctctctctta 35029133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 42881355 - 42881406
Alignment:
Q  217 tcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    ||||||||||||||| ||||||||||||| | |||||||||||||||||||||    
T  42881355 tcaacatccactttt-tcaattcccaacactccacatcattttctctctctta 42881406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 5813092 - 5813146
Alignment:
Q  214 cattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    ||||||||| |||||||| ||||||||||||| | |||||||||||||||||||||    
T  5813092 cattcaacacccactttt-tcaattcccaacactgcacatcattttctctctctta 5813146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 204 - 275
Target Start/End: Original strand, 22191205 - 22191274
Alignment:
Q  204 cattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    |||| |||| ||||||||| ||||||||| ||||| |||||| | |||||||||||||||||||||||||||    
T  22191205 cattcaacaccattcaaca-ccacttttt-caatttccaacactccacatcattttctctctcttattcaac 22191274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 313
Target Start/End: Complemental strand, 35193132 - 35193086
Alignment:
Q  269 attcaacttttac--tctccaatggtttttcattcaacactctatcc 313  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||    
T  35193132 attcaacttttaccatctccaatggtttttcattcaacactctatcc 35193086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 275
Target Start/End: Original strand, 21654854 - 21654900
Alignment:
Q  229 tttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    |||||||||| |||||| | |||||||||||||||||||||||||||    
T  21654854 tttttcaatttccaacactccacatcattttctctctcttattcaac 21654900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 269
Target Start/End: Complemental strand, 40302604 - 40302515
Alignment:
Q  179 ttagacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||||| |||||||||||| | ||| ||| |||||   || ||| ||| |||||||||||||||||| | |||||||||||||||||||||    
T  40302604 ttagaccatttacaatggtcacaaatattcaacaatcctcgacaccca-ttttttcaattcccaacactccacatcattttctctctctta 40302515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 269 - 315
Target Start/End: Original strand, 24793550 - 24793598
Alignment:
Q  269 attcaacttttac--tctccaatggtttttcattcaacactctatccca 315  Q
    |||||||||||||  ||||||||||||||||||||||||||||| ||||    
T  24793550 attcaacttttacactctccaatggtttttcattcaacactctacccca 24793598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 315
Target Start/End: Complemental strand, 30630891 - 30630779
Alignment:
Q  214 cattcaacatccacttttttcaattcccaacatttcacatcattttctctctcttat-----------tcaactttta--ctctccaatggtttttcatt 300  Q
    ||||||||| |||||||||| ||||||||||| | ||||| ||||||||||||||||           ||||||||||  ||||||||||||||||||||    
T  30630891 cattcaaca-ccactttttt-aattcccaacactccacattattttctctctcttattcaatactcattcaacttttactctctccaatggtttttcatt 30630794  T
Q  301 caacactctatccca 315  Q
    |||||||||| ||||    
T  30630793 caacactctacccca 30630779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 186 - 267
Target Start/End: Original strand, 37951713 - 37951793
Alignment:
Q  186 atttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctct 267  Q
    |||||||||||| ||| ||||| |||||| ||||||| | || ||||||||||||||||| | || ||||||||| ||||||    
T  37951713 atttacaatggtaaaatacattcaacaaccttcaacacctac-tttttcaattcccaacactccatatcattttccctctct 37951793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 272
Target Start/End: Complemental strand, 25038661 - 25038614
Alignment:
Q  224 ccacttttttcaattcccaacatttcacatcattttctctctcttattc 272  Q
    |||||||||| |||||||| || ||||||||||||||||||||||||||    
T  25038661 ccactttttt-aattcccagcacttcacatcattttctctctcttattc 25038614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 269
Target Start/End: Complemental strand, 33508638 - 33508550
Alignment:
Q  181 agacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||| ||||||||||||  ||||  || ||||||  |||||| ||| |||||||||||||||||| |  || |||||||||||||||||    
T  33508638 agaccatttacaatggttcaaaagtttcaacaaccctcaacacccatttttttcaattcccaacactctacgtcattttctctctctta 33508550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 275
Target Start/End: Complemental strand, 43202228 - 43202157
Alignment:
Q  204 cattgaacaacattcaacatccacttttttcaattcccaa-catttcacatcattttctctctcttattcaac 275  Q
    |||| ||||| |||||||||||||||||| |||| ||||| || ||||||| ||||||||||||||| |||||    
T  43202228 cattcaacaaaattcaacatccacttttt-caatgcccaatcacttcacattattttctctctcttactcaac 43202157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 216 - 275
Target Start/End: Original strand, 114486 - 114544
Alignment:
Q  216 ttcaacatccacttttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    ||||||| |||||||||  ||||| ||||| | |||||||||||||||||||||||||||    
T  114486 ttcaacacccacttttta-aattctcaacactccacatcattttctctctcttattcaac 114544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 315
Target Start/End: Original strand, 21654919 - 21654953
Alignment:
Q  281 ctctccaatggtttttcattcaacactctatccca 315  Q
    |||||||||||||||||||||||||||||| ||||    
T  21654919 ctctccaatggtttttcattcaacactctacccca 21654953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 275
Target Start/End: Complemental strand, 43571150 - 43571112
Alignment:
Q  237 ttcccaacatttcacatcattttctctctcttattcaac 275  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  43571150 ttcccaacactccacatcattttctctctcttattcaac 43571112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 275
Target Start/End: Original strand, 48984915 - 48984961
Alignment:
Q  229 tttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    |||||||||| |||||  | |||||||||||||||||||||||||||    
T  48984915 tttttcaatttccaacgctccacatcattttctctctcttattcaac 48984961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 315
Target Start/End: Complemental strand, 22737593 - 22737560
Alignment:
Q  282 tctccaatggtttttcattcaacactctatccca 315  Q
    ||||||||||||||||||||||||||||| ||||    
T  22737593 tctccaatggtttttcattcaacactctacccca 22737560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 37888523 - 37888575
Alignment:
Q  191 caatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaac 244  Q
    ||||||| ||| ||||| |||| |||||||||||||| ||||||||||||||||    
T  37888523 caatggttaaacacattcaacaccattcaacatccac-tttttcaattcccaac 37888575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 315
Target Start/End: Original strand, 48984981 - 48985014
Alignment:
Q  282 tctccaatggtttttcattcaacactctatccca 315  Q
    ||||||||||||||||||||||||||||| ||||    
T  48984981 tctccaatggtttttcattcaacactctacccca 48985014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 269
Target Start/End: Original strand, 30566608 - 30566648
Alignment:
Q  229 tttttcaattcccaacatttcacatcattttctctctctta 269  Q
    ||||||||||| ||||| | |||||||||||||||||||||    
T  30566608 tttttcaattctcaacactccacatcattttctctctctta 30566648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 269
Target Start/End: Original strand, 30720128 - 30720168
Alignment:
Q  229 tttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||||||||| |||||| | |||||||||||||||||||||    
T  30720128 tttttcaatttccaacactccacatcattttctctctctta 30720168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 266
Target Start/End: Complemental strand, 32130345 - 32130298
Alignment:
Q  218 caacatccacttttttcaattcccaacatttcacatcattttctctctc 266  Q
    ||||| |||||||||| ||||||||||| | ||||||||||||||||||    
T  32130345 caacacccactttttt-aattcccaacactccacatcattttctctctc 32130298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 40)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 214 - 315
Target Start/End: Original strand, 17783368 - 17783481
Alignment:
Q  214 cattcaacatccacttttttcaattcccaacatttcacatcattttctctctcttattcaac-----------ttttactct--ccaatggtttttcatt 300  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||           |||||||||  ||||||||||||||||    
T  17783368 cattcaacatccactttttt-aattcccaacattccacatcattttctctctcttattcaacactcattcaacttttactctctccaatggtttttcatt 17783466  T
Q  301 caacactctatccca 315  Q
    |||||||||| ||||    
T  17783467 caacactctacccca 17783481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 209 - 315
Target Start/End: Original strand, 41542316 - 41542432
Alignment:
Q  209 aacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctt---------attcaactttta--ctctccaatggtttttc 297  Q
    |||| |||||||||||||||||| ||||||||||||| | |||||||| |||||||||||         ||||||||||||  |||||||||||||||||    
T  41542316 aacatcattcaacatccactttt-tcaattcccaacactccacatcatattctctctcttattcaactcattcaacttttatcctctccaatggtttttc 41542414  T
Q  298 attcaacactctatccca 315  Q
    ||||||||||||| ||||    
T  41542415 attcaacactctacccca 41542432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 181 - 269
Target Start/End: Complemental strand, 2478439 - 2478352
Alignment:
Q  181 agacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||| |||||||||||| ||| | ||| |||||| ||||||| ||||||||| |||||||||||| | |||||||||||||||||||||    
T  2478439 agaccatttacaatggtaaaacaaattcaacaaccttcaacacccacttttt-caattcccaacactccacatcattttctctctctta 2478352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 192 - 275
Target Start/End: Complemental strand, 3755128 - 3755046
Alignment:
Q  192 aatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    |||||| ||||||||| |||| |||||| |||||||||||| |||||| ||||| |  ||||||||||||||||||||||||||    
T  3755128 aatggtaaaaaacattcaacaccattcagcatccacttttt-caattctcaacactctacatcattttctctctcttattcaac 3755046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 209 - 315
Target Start/End: Original strand, 8464085 - 8464203
Alignment:
Q  209 aacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctcttattcaac-----------ttttactct--ccaatggtttt 295  Q
    |||| ||||||||||||||||||| |||||| ||||| | |||||||||||||||||||||||||||           |||||||||  |||||||||||    
T  8464085 aacaccattcaacatccacttttt-caattctcaacactccacatcattttctctctcttattcaacactcattcaatttttactctctccaatggtttt 8464183  T
Q  296 tcattcaacactctatccca 315  Q
    ||||||||||||||| ||||    
T  8464184 tcattcaacactctacccca 8464203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 192 - 269
Target Start/End: Original strand, 8468293 - 8468369
Alignment:
Q  192 aatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||||| ||||||||| ||||||  |||||| |||||||| ||||||||||||| | |||||||||||||||||||||    
T  8468293 aatggttaaaaacattcaacaaccctcaacacccactttt-tcaattcccaacactccacatcattttctctctctta 8468369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 214 - 275
Target Start/End: Original strand, 44334280 - 44334340
Alignment:
Q  214 cattcaacatccacttttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    |||||||||||||||||| ||||||| ||||| | |||||||||||||||||||||||||||    
T  44334280 cattcaacatccactttt-tcaattctcaacactccacatcattttctctctcttattcaac 44334340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 214 - 275
Target Start/End: Complemental strand, 44929368 - 44929308
Alignment:
Q  214 cattcaacatccacttttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    ||||||||||||| |||||||||||| |||||||||| |||||||||||||| |||||||||    
T  44929368 cattcaacatcca-ttttttcaattctcaacatttcaaatcattttctctcttttattcaac 44929308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 181 - 269
Target Start/End: Complemental strand, 48388219 - 48388132
Alignment:
Q  181 agacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||| |||||||||||| |  || ||| |||||| ||||||| ||||||||| |||||||||||| | |||||||||||||||||||||    
T  48388219 agaccatttacaatggtaactaatattcaacaaccttcaacacccacttttt-caattcccaacactccacatcattttctctctctta 48388132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 181 - 269
Target Start/End: Complemental strand, 51494583 - 51494496
Alignment:
Q  181 agacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||| |||||||||||| ||| | ||| |||||| ||||||| |||||||||| ||||| ||||| | |||||||||||||||||||||    
T  51494583 agaccatttacaatggtaaaatatattcaacaaccttcaacacccactttttt-aattctcaacactccacatcattttctctctctta 51494496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 186 - 269
Target Start/End: Original strand, 36230320 - 36230402
Alignment:
Q  186 atttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||||||||||| ||| ||||| ||||||  |||||| | |||||| ||||||||||||| ||||||||||||| |||||||||    
T  36230320 atttacaatggttaaacacattcaacaaccctcaacaccaactttt-tcaattcccaacacttcacatcattttatctctctta 36230402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 44451334 - 44451288
Alignment:
Q  229 tttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||    
T  44451334 tttttcaattcccaacactccacatcattttctctctcttattcaac 44451288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 229 - 315
Target Start/End: Original strand, 44651078 - 44651177
Alignment:
Q  229 tttttcaattcccaacatttcacatcattttctctctcttattcaac-----------ttttac--tctccaatggtttttcattcaacactctatccca 315  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||           ||||||  ||||||||||||||||||||||||||||| ||||    
T  44651078 tttttcaattcccaacactccacatcattttctctctcttattcaacactcattcaacttttaccctctccaatggtttttcattcaacactctacccca 44651177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 19578985 - 19578934
Alignment:
Q  217 tcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||||||||||||||| |||||||||||| | |||||||||||||||||||||    
T  19578985 tcaacatccacttttt-caattcccaacactccacatcattttctctctctta 19578934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 269
Target Start/End: Original strand, 31159345 - 31159432
Alignment:
Q  181 agacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||| ||||||||||||  ||||  || ||||||  |||||||| |||||| ||||||||||||| | |||||||||||||||||||||    
T  31159345 agaccatttacaatggttgaaaagtttcaacaaccctcaacatctactttt-tcaattcccaacactccacatcattttctctctctta 31159432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 269
Target Start/End: Original strand, 48404288 - 48404375
Alignment:
Q  181 agacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||| |||||||||||| | ||| ||| ||||||  |||||| | |||||| ||||||||||||| | |||||||||||||||||||||    
T  48404288 agaccatttacaatggtcacaaatattcaacaaccctcaacaccaactttt-tcaattcccaacactccacatcattttctctctctta 48404375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 31468124 - 31468178
Alignment:
Q  214 cattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    ||||||||| |||||||| ||||||||||||| | |||||||||||||||||||||    
T  31468124 cattcaacacccactttt-tcaattcccaacactccacatcattttctctctctta 31468178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 643886 - 643840
Alignment:
Q  229 tttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    ||||||||||||||||| | ||| |||||||||||||||||||||||    
T  643886 tttttcaattcccaacactccacgtcattttctctctcttattcaac 643840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 268
Target Start/End: Original strand, 45239129 - 45239182
Alignment:
Q  214 cattcaacatccacttttttcaattcccaacatttcacatcattttctctctctt 268  Q
    ||||||||| |||||||| ||||||||||||| | ||||||||||||||||||||    
T  45239129 cattcaacacccactttt-tcaattcccaacactccacatcattttctctctctt 45239182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 316
Target Start/End: Complemental strand, 52933781 - 52933732
Alignment:
Q  269 attcaacttttac--tctccaatggtttttcattcaacactctatcccat 316  Q
    |||||||||||||  ||||||||||||||||||||||||||||| |||||    
T  52933781 attcaacttttacactctccaatggtttttcattcaacactctaccccat 52933732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 316
Target Start/End: Complemental strand, 52941416 - 52941367
Alignment:
Q  269 attcaacttttac--tctccaatggtttttcattcaacactctatcccat 316  Q
    |||||||||||||  ||||||||||||||||||||||||||||| |||||    
T  52941416 attcaacttttacactctccaatggtttttcattcaacactctaccccat 52941367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 29523696 - 29523748
Alignment:
Q  216 ttcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    ||||||| |||||||| ||||||||||||| | |||||||||||||||||||||    
T  29523696 ttcaacacccactttt-tcaattcccaacactccacatcattttctctctctta 29523748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 269
Target Start/End: Complemental strand, 45623641 - 45623554
Alignment:
Q  181 agacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||| |||||||||||  ||| | ||| ||||||  |||||||| ||||||| ||||||| |||| | |||||||||||||||||||||    
T  45623641 agaccatttacaatggcaaaatatattcaacaactctcaacatctacttttt-caattcctaacactccacatcattttctctctctta 45623554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 27630538 - 27630484
Alignment:
Q  214 cattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    ||||||||| ||||||||| |||||||||||| | ||||||||||| |||||||||    
T  27630538 cattcaacacccacttttt-caattcccaacactccacatcattttatctctctta 27630484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 178 - 269
Target Start/End: Original strand, 29919325 - 29919415
Alignment:
Q  178 attagacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    ||||||| |||||||||||  ||| | ||| |||||   |||||||| |||||| ||||||||||||| | || ||||||||||||||||||    
T  29919325 attagaccatttacaatggcaaaatatattcaacaaacctcaacatctactttt-tcaattcccaacactccatatcattttctctctctta 29919415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 268 - 308
Target Start/End: Original strand, 36303037 - 36303079
Alignment:
Q  268 tattcaacttttac--tctccaatggtttttcattcaacactc 308  Q
    ||||||||||||||  |||||||||||||||||||||||||||    
T  36303037 tattcaacttttaccctctccaatggtttttcattcaacactc 36303079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 37420422 - 37420368
Alignment:
Q  214 cattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    ||||||||| ||||||||| |||||||||||| | ||||||||||| |||||||||    
T  37420422 cattcaacacccacttttt-caattcccaacactccacatcattttatctctctta 37420368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 216 - 275
Target Start/End: Original strand, 48729315 - 48729373
Alignment:
Q  216 ttcaacatccacttttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    ||||||||||| |||||||||||   |||| ||||||||||||||||| |||||||||||    
T  48729315 ttcaacatcca-ttttttcaatttttaacacttcacatcattttctctttcttattcaac 48729373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 271
Target Start/End: Complemental strand, 20584915 - 20584873
Alignment:
Q  229 tttttcaattcccaacatttcacatcattttctctctcttatt 271  Q
    ||||||||||||||||| | |||||||||||||| ||||||||    
T  20584915 tttttcaattcccaacactccacatcattttctcactcttatt 20584873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 266
Target Start/End: Complemental strand, 35847197 - 35847148
Alignment:
Q  216 ttcaacatccacttttttcaattcccaacatttcacatcattttctctctc 266  Q
    |||||||||||||||||| |||| |||||| | ||||||||||||||||||    
T  35847197 ttcaacatccactttttt-aatttccaacactccacatcattttctctctc 35847148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 315
Target Start/End: Complemental strand, 44451269 - 44451235
Alignment:
Q  281 ctctccaatggtttttcattcaacactctatccca 315  Q
    |||||||||||||||||||||||||||||| ||||    
T  44451269 ctctccaatggtttttcattcaacactctacccca 44451235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 315
Target Start/End: Complemental strand, 44929289 - 44929255
Alignment:
Q  281 ctctccaatggtttttcattcaacactctatccca 315  Q
    |||||||||||||||||||||||||||||| ||||    
T  44929289 ctctccaatggtttttcattcaacactctacccca 44929255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 308
Target Start/End: Original strand, 48729378 - 48729419
Alignment:
Q  269 attcaacttttac--tctccaatggtttttcattcaacactc 308  Q
    |||||||||||||  |||||||||||||||||||||||||||    
T  48729378 attcaacttttaccctctccaatggtttttcattcaacactc 48729419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 52933832 - 52933786
Alignment:
Q  229 tttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    |||||||||||| |||| | ||| |||||||||||||||||||||||    
T  52933832 tttttcaattcctaacactccacgtcattttctctctcttattcaac 52933786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 52941467 - 52941421
Alignment:
Q  229 tttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    |||||||||||| |||| | ||| |||||||||||||||||||||||    
T  52941467 tttttcaattcctaacactccacgtcattttctctctcttattcaac 52941421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 269
Target Start/End: Original strand, 23092774 - 23092814
Alignment:
Q  229 tttttcaattcccaacatttcacatcattttctctctctta 269  Q
    ||||||||||||||||| | ||| |||||||||||||||||    
T  23092774 tttttcaattcccaacactccacgtcattttctctctctta 23092814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 269
Target Start/End: Complemental strand, 30878608 - 30878568
Alignment:
Q  229 tttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||||||||| |||||| | |||||||||||||||||||||    
T  30878608 tttttcaatttccaacactccacatcattttctctctctta 30878568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 269
Target Start/End: Complemental strand, 37646624 - 37646584
Alignment:
Q  229 tttttcaattcccaacatttcacatcattttctctctctta 269  Q
    ||||| ||||||||||| | |||||||||||||||||||||    
T  37646624 ttttttaattcccaacactccacatcattttctctctctta 37646584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 269
Target Start/End: Complemental strand, 37691354 - 37691314
Alignment:
Q  229 tttttcaattcccaacatttcacatcattttctctctctta 269  Q
    ||||||||||||||||| | ||||| |||||||||||||||    
T  37691354 tttttcaattcccaacactccacattattttctctctctta 37691314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 269
Target Start/End: Complemental strand, 45456215 - 45456175
Alignment:
Q  229 tttttcaattcccaacatttcacatcattttctctctctta 269  Q
    ||||||||||||||||| | ||||| |||||||||||||||    
T  45456215 tttttcaattcccaacactccacataattttctctctctta 45456175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 186 - 269
Target Start/End: Original strand, 8669855 - 8669937
Alignment:
Q  186 atttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||||||||||| ||| ||||| |||||| |||||||||||| |||||||||| |||||| ||||||| |||||||||||||||    
T  8669855 atttacaatggtaaaatacattcaacaaccttcaacatccac-tttttcaatttccaacacttcacattattttctctctctta 8669937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 214 - 275
Target Start/End: Complemental strand, 29428596 - 29428536
Alignment:
Q  214 cattcaacatccacttttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    ||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||    
T  29428596 cattcaacatccacttttt-caattcccaacactccacatcattttctctctcttattcaac 29428536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 179 - 269
Target Start/End: Original strand, 8660517 - 8660606
Alignment:
Q  179 ttagacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||||| ||||||||| || |||  |||| |||||| ||||||| |||||||| ||||||||||||| | |||||||||||||||||||||    
T  8660517 ttagaccatttacaattgtaaaacccattcaacaaccttcaacacccactttt-tcaattcccaacactccacatcattttctctctctta 8660606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 229 - 275
Target Start/End: Original strand, 32359753 - 32359799
Alignment:
Q  229 tttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  32359753 tttttcaattcccaacattccacatcattttctctctcttattcaac 32359799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 181 - 269
Target Start/End: Original strand, 34838541 - 34838628
Alignment:
Q  181 agacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||| |||||||||||| ||| ||||| || ||| |||||||  ||||||| ||||||||||||| | |||||||||||||||||||||    
T  34838541 agaccatttacaatggtaaaatacattcaataaccttcaacactcactttt-tcaattcccaacactccacatcattttctctctctta 34838628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 6380553 - 6380507
Alignment:
Q  229 tttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||    
T  6380553 tttttcaattcccaacactccacatcattttctctctcttattcaac 6380507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 179 - 269
Target Start/End: Original strand, 30446202 - 30446291
Alignment:
Q  179 ttagacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||||| |||||||||||| ||| | ||| ||||||  |||||| ||| ||||||||||||| |||| | |||||||||||||||||||||    
T  30446202 ttagaccatttacaatggtaaaacaaattcaacaaccctcaacaccca-ttttttcaattcctaacactccacatcattttctctctctta 30446291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 269
Target Start/End: Original strand, 10883832 - 10883919
Alignment:
Q  181 agacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||| ||||||||||||  ||||  || ||||||  |||||||||||||||| ||||| |||||| | |||||||||||||||||||||    
T  10883832 agaccatttacaatggttgaaaagtttcaacaaccctcaacatccacttttt-caatttccaacactccacatcattttctctctctta 10883919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 197797 - 197851
Alignment:
Q  214 cattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||||||||||||||||| ||||||||||||| | ||| |||||||||||||||||    
T  197797 cattcaacatccactttt-tcaattcccaacactccacgtcattttctctctctta 197851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 268
Target Start/End: Original strand, 631511 - 631564
Alignment:
Q  214 cattcaacatccacttttttcaattcccaacatttcacatcattttctctctctt 268  Q
    ||||||||| |||||||| ||||||||||||| | ||||||||||||||||||||    
T  631511 cattcaacacccactttt-tcaattcccaacactccacatcattttctctctctt 631564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 17961342 - 17961288
Alignment:
Q  214 cattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    ||||||||| ||||||||| |||||||||||| | ||||| |||||||||||||||    
T  17961342 cattcaacacccacttttt-caattcccaacactccacataattttctctctctta 17961288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 204 - 275
Target Start/End: Original strand, 22627819 - 22627889
Alignment:
Q  204 cattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    |||| ||||||| |||||| |||| |||| ||||| |||||| | ||||||||||||||||| |||||||||    
T  22627819 cattcaacaacactcaacacccacgtttt-caatttccaacactccacatcattttctctcttttattcaac 22627889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 34328274 - 34328328
Alignment:
Q  214 cattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    ||||||||| |||||||| ||||||||||||| | ||||||||||| |||||||||    
T  34328274 cattcaacacccactttt-tcaattcccaacactccacatcattttatctctctta 34328328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 315
Target Start/End: Complemental strand, 6380488 - 6380454
Alignment:
Q  281 ctctccaatggtttttcattcaacactctatccca 315  Q
    |||||||||||||||||||||||||||||| ||||    
T  6380488 ctctccaatggtttttcattcaacactctacccca 6380454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 275
Target Start/End: Complemental strand, 6725681 - 6725643
Alignment:
Q  237 ttcccaacatttcacatcattttctctctcttattcaac 275  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  6725681 ttcccaacactccacatcattttctctctcttattcaac 6725643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 315
Target Start/End: Original strand, 8219004 - 8219052
Alignment:
Q  269 attcaacttttac-tctccaatggtttt-tcattcaacactctatccca 315  Q
    ||||||||||||| |||||||||||||| ||||||||||||||| ||||    
T  8219004 attcaacttttacctctccaatggttttttcattcaacactctacccca 8219052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 269
Target Start/End: Original strand, 12501839 - 12501879
Alignment:
Q  229 tttttcaattcccaacatttcacatcattttctctctctta 269  Q
    ||||||||||| ||||| | |||||||||||||||||||||    
T  12501839 tttttcaattctcaacaatccacatcattttctctctctta 12501879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 265
Target Start/End: Original strand, 24348440 - 24348476
Alignment:
Q  229 tttttcaattcccaacatttcacatcattttctctct 265  Q
    ||||||||||||||||| | |||||||||||||||||    
T  24348440 tttttcaattcccaacactccacatcattttctctct 24348476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 36)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 179 - 269
Target Start/End: Original strand, 35931820 - 35931909
Alignment:
Q  179 ttagacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||||| |||||||||||| ||| | ||| |||||| |||||||||||| |||||||||| |||||| | |||||||||||||||||||||    
T  35931820 ttagaccatttacaatggtaaaacaaattcaacaaccttcaacatccac-tttttcaatttccaacactccacatcattttctctctctta 35931909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 186 - 271
Target Start/End: Complemental strand, 29637261 - 29637177
Alignment:
Q  186 atttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctcttatt 271  Q
    |||||||||||||||||||||| ||||||| | |||||||| ||||||||||| |||||| | ||||| ||||||||| |||||||    
T  29637261 atttacaatggtgaaaaacattcaacaacacttaacatcca-ttttttcaatttccaacactccacataattttctctttcttatt 29637177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 181 - 269
Target Start/End: Complemental strand, 1958291 - 1958204
Alignment:
Q  181 agacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||| |||||||||||| ||| ||||| || ||| ||||||| ||||||||| |||||||||||| | |||||||||||||||||||||    
T  1958291 agaccatttacaatggtaaaatacattcaataaccttcaacacccacttttt-caattcccaacactccacatcattttctctctctta 1958204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 209 - 275
Target Start/End: Original strand, 41477171 - 41477236
Alignment:
Q  209 aacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    |||| |||||||||||||||||| ||||||||||||| | ||| |||||||||||||||||||||||    
T  41477171 aacaccattcaacatccactttt-tcaattcccaacactccacgtcattttctctctcttattcaac 41477236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 214 - 274
Target Start/End: Original strand, 17741705 - 17741764
Alignment:
Q  214 cattcaacatccacttttttcaattcccaacatttcacatcattttctctctcttattcaa 274  Q
    |||||||||||||||||| ||||||||||| | | ||||||||||||||||||||||||||    
T  17741705 cattcaacatccactttt-tcaattcccaagactccacatcattttctctctcttattcaa 17741764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 18029588 - 18029517
Alignment:
Q  203 acattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    ||||| |||| ||||| ||| ||||||||| |||||||||||| | |||||||||||||||||||||||||||    
T  18029588 acattcaacaccattcgacacccacttttt-caattcccaacactccacatcattttctctctcttattcaac 18029517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 179 - 271
Target Start/End: Complemental strand, 23353296 - 23353205
Alignment:
Q  179 ttagacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctcttatt 271  Q
    |||||| ||||||||||||||||| || | ||||||| ||||| ||||| |||||||||| |||||| | ||||||  |||||||||||||||    
T  23353296 ttagaccatttacaatggtgaaaagcaatcaacaacactcaacgtccac-tttttcaatttccaacactccacatccctttctctctcttatt 23353205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 204 - 275
Target Start/End: Complemental strand, 30470906 - 30470836
Alignment:
Q  204 cattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    |||| |||| ||||||| ||||| |||||||||||||||||| | ||| |||||||||||||||||||||||    
T  30470906 cattcaacaccattcaagatcca-ttttttcaattcccaacactccacgtcattttctctctcttattcaac 30470836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 34955730 - 34955684
Alignment:
Q  229 tttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||    
T  34955730 tttttcaattcccaacactccacatcattttctctctcttattcaac 34955684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 209 - 315
Target Start/End: Original strand, 36912405 - 36912523
Alignment:
Q  209 aacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctcttattcaac-----------ttttac--tctccaatggtttt 295  Q
    |||| ||||||||| ||||||||| |||||||||||| |  ||||||||||||||||||||||||||           ||||||  ||||||||||||||    
T  36912405 aacaccattcaacacccacttttt-caattcccaacactctacatcattttctctctcttattcaacactcattcaacttttaccctctccaatggtttt 36912503  T
Q  296 tcattcaacactctatccca 315  Q
    ||||||||||||||| ||||    
T  36912504 tcattcaacactctacccca 36912523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 275
Target Start/End: Original strand, 5212285 - 5212344
Alignment:
Q  214 cattcaacatccacttttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    ||||||||| |||||||||| ||||||||||| | |||||||||||||||||||||||||||    
T  5212285 cattcaaca-ccactttttt-aattcccaacactccacatcattttctctctcttattcaac 5212344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 269
Target Start/End: Complemental strand, 45101136 - 45101049
Alignment:
Q  181 agacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||| |||||||||||  ||| | ||| ||||||  |||||| ||||||||| |||||||||||| | |||||||||||||||||||||    
T  45101136 agaccatttacaatggcaaaatatattcaacaaccctcaacacccacttttt-caattcccaacactccacatcattttctctctctta 45101049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 178 - 269
Target Start/End: Original strand, 15053589 - 15053679
Alignment:
Q  178 attagacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    ||||||| |||||||||||| | ||| ||| |||||   |||||| |||||||| ||||||||||||| | | |||||||||||||||||||    
T  15053589 attagaccatttacaatggtcacaaatattcaacaatcatcaacacccactttt-tcaattcccaacactccgcatcattttctctctctta 15053679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 204 - 275
Target Start/End: Complemental strand, 26632241 - 26632171
Alignment:
Q  204 cattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    |||| |||| ||||||||| ||||||||| ||||||||||||   ||| |||||||||||||||||||||||    
T  26632241 cattcaacaccattcaacacccacttttt-caattcccaacacgccacgtcattttctctctcttattcaac 26632171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 204 - 275
Target Start/End: Complemental strand, 38584982 - 38584912
Alignment:
Q  204 cattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    |||| |||| |||||||||  |||||||| |||||||||||| | ||| |||||||||||||||||||||||    
T  38584982 cattcaacaccattcaacacacacttttt-caattcccaacactccacgtcattttctctctcttattcaac 38584912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 204 - 275
Target Start/End: Complemental strand, 39811147 - 39811076
Alignment:
Q  204 cattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    |||| |||| ||||||||| |||||||||| |||||| | || | ||||||||||| |||||||||||||||    
T  39811147 cattcaacaccattcaacacccactttttttaattcctagcactccacatcattttatctctcttattcaac 39811076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 266
Target Start/End: Complemental strand, 43524504 - 43524418
Alignment:
Q  179 ttagacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctc 266  Q
    |||||| || ||||||||| |||||  || || | | ||||||||||||||||| |||||||||||| | ||||||||||||||||||    
T  43524504 ttagaccatgtacaatggttaaaaaatttcaatacccttcaacatccacttttt-caattcccaacactccacatcattttctctctc 43524418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 275
Target Start/End: Complemental strand, 8610064 - 8609999
Alignment:
Q  209 aacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    |||| |||||||||| |||||||| |||||||||||| | || |||||||||||||| |||||||||    
T  8610064 aacaccattcaacattcacttttt-caattcccaacactccatatcattttctctcttttattcaac 8609999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 275
Target Start/End: Original strand, 13814954 - 13815000
Alignment:
Q  229 tttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    |||||||||| |||||| | |||||||||||||||||||||||||||    
T  13814954 tttttcaatttccaacactccacatcattttctctctcttattcaac 13815000  T

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Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 274
Target Start/End: Complemental strand, 30289815 - 30289749
Alignment:
Q  209 aacaacattcaacatccactttttt-caattcccaacatttcacatcattttctctctcttattcaa 274  Q
    |||| ||||||| |||||||||||| |||||| ||||| |  |||||||||||||||||||||||||    
T  30289815 aacaccattcaatatccactttttttcaattctcaacactctacatcattttctctctcttattcaa 30289749  T

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Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 266
Target Start/End: Original strand, 40283470 - 40283519
Alignment:
Q  216 ttcaacatccacttttttcaattcccaacatttcacatcattttctctctc 266  Q
    |||||||||||||||| ||||||||||||| | ||||||||||||||||||    
T  40283470 ttcaacatccactttt-tcaattcccaacactccacatcattttctctctc 40283519  T

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Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 275
Target Start/End: Original strand, 42860721 - 42860767
Alignment:
Q  229 tttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    ||||||||||||||||| | ||||||||||||||| |||||||||||    
T  42860721 tttttcaattcccaacactccacatcattttctctttcttattcaac 42860767  T

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Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 269 - 315
Target Start/End: Complemental strand, 30470831 - 30470783
Alignment:
Q  269 attcaacttttactctc--caatggtttttcattcaacactctatccca 315  Q
    |||||||||||||||||  ||||||||||||||||||||||||| ||||    
T  30470831 attcaacttttactctcttcaatggtttttcattcaacactctacccca 30470783  T

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Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 269
Target Start/End: Complemental strand, 12272593 - 12272506
Alignment:
Q  181 agacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||| |||||||||||| ||| | ||| ||||||  |||||||||||| |||||||||  ||||| | ||| |||||||||||||||||    
T  12272593 agactatttacaatggtaaaataaattcaacaaccctcaacatccact-ttttcaattttcaacactccacttcattttctctctctta 12272506  T

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Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 269
Target Start/End: Complemental strand, 31129606 - 31129527
Alignment:
Q  189 tacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||||| || |||| |||| ||||||| |||||| | ||||||| |||||| ||||| | |||||||||||||||||||||    
T  31129606 tacaattgttaaaatcatttaacaacactcaacaccaacttttt-caattctcaacactccacatcattttctctctctta 31129527  T

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Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 269
Target Start/End: Original strand, 42859932 - 42859972
Alignment:
Q  229 tttttcaattcccaacatttcacatcattttctctctctta 269  Q
    ||||||||||||||||| | |||||||||||||||||||||    
T  42859932 tttttcaattcccaacactccacatcattttctctctctta 42859972  T

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Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 35099428 - 35099482
Alignment:
Q  214 cattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    ||||||||| |||||||| ||||||||||||| |  ||||||||||||||||||||    
T  35099428 cattcaacacccactttt-tcaattcccaacactctacatcattttctctctctta 35099482  T

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Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 178 - 265
Target Start/End: Complemental strand, 43525203 - 43525117
Alignment:
Q  178 attagacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctct 265  Q
    ||||||| |||||| ||||| ||| | ||| ||||||  |||||| ||||||||| ||||| |||||| | |||||||||||||||||    
T  43525203 attagaccatttacgatggtaaaacaaattcaacaaccctcaacacccacttttt-caatttccaacactccacatcattttctctct 43525117  T

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Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 43618427 - 43618373
Alignment:
Q  214 cattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    ||||||||| ||||||| | |||||||||||| | |||||||||||||||||||||    
T  43618427 cattcaacacccactttat-caattcccaacactccacatcattttctctctctta 43618373  T

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Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 4625558 - 4625512
Alignment:
Q  229 tttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    ||||||||||||||||| | || || |||||||||||||||||||||    
T  4625558 tttttcaattcccaacactccaaattattttctctctcttattcaac 4625512  T

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Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 315
Target Start/End: Complemental strand, 17494553 - 17494519
Alignment:
Q  281 ctctccaatggtttttcattcaacactctatccca 315  Q
    |||||||||||||||||||||||||||||| ||||    
T  17494553 ctctccaatggtttttcattcaacactctacccca 17494519  T

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Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 315
Target Start/End: Complemental strand, 18029498 - 18029464
Alignment:
Q  281 ctctccaatggtttttcattcaacactctatccca 315  Q
    |||||||||||||||||||||||||||||| ||||    
T  18029498 ctctccaatggtttttcattcaacactctacccca 18029464  T

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Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 266
Target Start/End: Original strand, 26244492 - 26244541
Alignment:
Q  216 ttcaacatccacttttttcaattcccaacatttcacatcattttctctctc 266  Q
    |||||||| ||||||| ||||||||||||| | ||||||||||||||||||    
T  26244492 ttcaacattcactttt-tcaattcccaacactccacatcattttctctctc 26244541  T

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Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 307
Target Start/End: Original strand, 7990489 - 7990529
Alignment:
Q  269 attcaacttttac--tctccaatggtttttcattcaacact 307  Q
    |||||||||||||  ||||||||||||||||||||||||||    
T  7990489 attcaacttttaccctctccaatggtttttcattcaacact 7990529  T

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Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 310
Target Start/End: Original strand, 41477256 - 41477284
Alignment:
Q  282 tctccaatggtttttcattcaacactcta 310  Q
    |||||||||||||||||||||||||||||    
T  41477256 tctccaatggtttttcattcaacactcta 41477284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 269
Target Start/End: Original strand, 44503174 - 44503214
Alignment:
Q  229 tttttcaattcccaacatttcacatcattttctctctctta 269  Q
    ||||||||||||||||| | ||| |||||||||||||||||    
T  44503174 tttttcaattcccaacactccacgtcattttctctctctta 44503214  T

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Target: scaffold0054 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 181 - 269
Target Start/End: Complemental strand, 57854 - 57767
Alignment:
Q  181 agacaatttacaatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctctta 269  Q
    |||| ||||| |||||| | ||||||| ||||||  |||||| ||||||||| |||||||||||| | |||||||||||||||||||||    
T  57854 agaccatttataatggtcacaaacattcaacaaccctcaacacccacttttt-caattcccaacactccacatcattttctctctctta 57767  T

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Target: scaffold0012 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 310
Target Start/End: Original strand, 124004 - 124115
Alignment:
Q  209 aacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctct---------cttattcaacttttac--tctccaatggtttttc 297  Q
    |||| ||||||||||||||||||| ||||| |||||| | ||||||||||| |||||         || |||||||||||||  ||||||||||||||||    
T  124004 aacaccattcaacatccacttttt-caatttccaacactccacatcattttttctcttattcaacactcattcaacttttaccatctccaatggtttttc 124102  T
Q  298 attcaacactcta 310  Q
    |||||||||||||    
T  124103 attcaacactcta 124115  T

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Target: scaffold0100 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 266 - 315
Target Start/End: Complemental strand, 30554 - 30503
Alignment:
Q  266 cttattcaacttttactctc--caatggtttttcattcaacactctatccca 315  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||| ||||    
T  30554 cttattcaacttttactctctccaatggtttttcattcaacactctacccca 30503  T

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Target: scaffold0100; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 191 - 275
Target Start/End: Complemental strand, 30639 - 30556
Alignment:
Q  191 caatggtgaaaaacattgaacaacattcaacatccacttttttcaattcccaacatttcacatcattttctctctcttattcaac 275  Q
    ||||||| |||  |||| |||| ||||||||||||||||||| |||||| ||||| | || || |||||||||||||||||||||    
T  30639 caatggttaaacccattcaacaccattcaacatccacttttt-caattctcaacactccatataattttctctctcttattcaac 30556  T

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Target: scaffold0362 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 269
Target Start/End: Complemental strand, 5387 - 5347
Alignment:
Q  229 tttttcaattcccaacatttcacatcattttctctctctta 269  Q
    ||||||||||||||||| | ||||||||||||||| |||||    
T  5387 tttttcaattcccaacactccacatcattttctctttctta 5347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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