View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1714_low_13 (Length: 414)
Name: NF1714_low_13
Description: NF1714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1714_low_13 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 10 - 414
Target Start/End: Original strand, 30098722 - 30099126
Alignment:
| Q |
10 |
aagaaaattccaaacaaatggaaaggaacatgtgaaactggccaagaattcaatacctcaatgtgtaacttcaaattgattggagctagatatttcaaca |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30098722 |
aagaaaattccaaacaaatggaaaggaacatgtgaaactggccaagaattcaatacctcaatgtgtaacttcaaattgattggagctagatatttcaaca |
30098821 |
T |
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| Q |
110 |
aaggtgtgattgcttcaaatccaaatgttacaatcagcatgaactcagctagagacactataggacatggaactcacacatcatcaactgttgcaggtaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
30098822 |
aaggtgtgattgcttcaaatccaaatgttacaatcagcatgaactcagctagagacactatagggcatggaactcacacatcatcaactgttgcaggtaa |
30098921 |
T |
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| Q |
210 |
ctannnnnnnngtggttggagacaaatgttagtaaattatgttagtttccggtgtttgaactctcgacttcctagctagtactcattcggtgtctctgag |
309 |
Q |
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| T |
30098922 |
ctattttttttgttgttggagacaaatgttagtaaattatgttagtttccggtgtttgaactctcgacttcctagctagtactcattcggtgtctctgag |
30099021 |
T |
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| Q |
310 |
cttaccaatcgaactgtctgctttgaacttgtaggtaactatgttaatggagcttcttattttggttatgctaaaggaatagcaagaggcattgcaccaa |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
30099022 |
cttaccaatcgaactgtctgctttgaacttgtaggtaactatgttaatggagcttcttattttggttatgccaaaggaatagcaagaggcattgcaccaa |
30099121 |
T |
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| Q |
410 |
aagct |
414 |
Q |
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| T |
30099122 |
aagct |
30099126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 10 - 212
Target Start/End: Complemental strand, 30092144 - 30091942
Alignment:
| Q |
10 |
aagaaaattccaaacaaatggaaaggaacatgtgaaactggccaagaattcaatacctcaatgtgtaacttcaaattgattggagctagatatttcaaca |
109 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||| ||||| ||||||||| ||||||||||||||| |||||||| |
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| T |
30092144 |
aagaaaattccgaacaaatggaaaggaacatgtgaaactggccataaattcaatgcctccatgtgcaacttcaaactgattggagctagatctttcaaca |
30092045 |
T |
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| Q |
110 |
aaggtgtgattgcttcaaatccaaatgttacaatcagcatgaactcagctagagacactataggacatggaactcacacatcatcaactgttgcaggtaa |
209 |
Q |
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|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||| |||||||||||||| ||||||||||| ||||||||||| |
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| T |
30092044 |
aaggtgtgattgcttcaaatccaaatgttagaatcaggatgaactcagctagagacagtatcggacatggaactcatacatcatcaacagttgcaggtaa |
30091945 |
T |
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| Q |
210 |
cta |
212 |
Q |
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||| |
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| T |
30091944 |
cta |
30091942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 10 - 211
Target Start/End: Complemental strand, 30088186 - 30087982
Alignment:
| Q |
10 |
aagaaaattccaaacaaatggaaaggaacatgtgaaactggccaagaattcaatacctcaatgtgtaacttcaaattgattggagctagatatttcaaca |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||| ||||||||| |||||||||| |||| |||||| | |
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| T |
30088186 |
aagaaaattccaaacaaatggaaaggaacatgtgaaactggccataaattcaatgcctccgtgtgcaacttcaaactgattggagcaagatctttcaata |
30088087 |
T |
|
| Q |
110 |
aaggtgtgattgc---ttcaaatccaaatgttacaatcagcatgaactcagctagagacactataggacatggaactcacacatcatcaactgttgcagg |
206 |
Q |
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||||||||||||| | ||| ||||||| |||||||| ||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||| |
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| T |
30088086 |
aaggtgtgattgcaggtaactatcgaaatgttggaatcagcaagaactcagctagagacagtatcggacatggaactcatacatcatcaactgttgcagg |
30087987 |
T |
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| Q |
207 |
taact |
211 |
Q |
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||||| |
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| T |
30087986 |
taact |
30087982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 286 - 414
Target Start/End: Complemental strand, 30091914 - 30091787
Alignment:
| Q |
286 |
tagtactcattcggtgtctctgagcttaccaatcgaactgtctgctttgaacttgtaggtaactatgttaatggagcttcttattttggttatgctaaag |
385 |
Q |
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|||||||| ||| || |||| ||||||| |||||| |||||||||| | |||| |||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
30091914 |
tagtactccttctgtaactctcagcttactaatcgagctgtctgcttcggacttc-aggtaactatgtcaatggaacttcttattttggttatgctaaag |
30091816 |
T |
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| Q |
386 |
gaatagcaagaggcattgcaccaaaagct |
414 |
Q |
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| T |
30091815 |
gagtagcaagaggcattgcaccaagagct |
30091787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 342 - 414
Target Start/End: Complemental strand, 30087879 - 30087807
Alignment:
| Q |
342 |
aggtaactatgttaatggagcttcttattttggttatgctaaaggaatagcaagaggcattgcaccaaaagct |
414 |
Q |
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|||||||||||| || ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
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| T |
30087879 |
aggtaactatgtcaacggagcttcttattttggctatgctaaaggagtagcaagaggcattgcaccaaaagct |
30087807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 2 - 197
Target Start/End: Complemental strand, 35171781 - 35171586
Alignment:
| Q |
2 |
gcatgtcgaagaaaattccaaacaaatggaaaggaacatgtgaaactggccaagaattcaatacctcaatgtgtaacttcaaattgattggagctagata |
101 |
Q |
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|||||||||| || || |||| ||||||||||||| |||| || | || ||||| ||||| || || ||||||||||| ||||| |||||||||||||| |
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| T |
35171781 |
gcatgtcgaaaaacatcccaacaaaatggaaaggaaaatgtcaagcaggacaagatttcaacacttctatgtgtaacttgaaattaattggagctagata |
35171682 |
T |
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| Q |
102 |
tttcaacaaaggtgtgattgcttcaaatccaaatgttacaatcagcatgaactcagctagagacactataggacatggaactcacacatcatcaac |
197 |
Q |
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||||||||||||||||||||| ||||| |||||||| | |||||| |||||||||||||||||||| ||||||||| | ||||||||||||||| |
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| T |
35171681 |
tttcaacaaaggtgtgattgcatcaaaaccaaatgtcaaaatcagtatgaactcagctagagacacacaaggacatggtagtcacacatcatcaac |
35171586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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