View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1714_low_14 (Length: 396)
Name: NF1714_low_14
Description: NF1714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1714_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 87 - 379
Target Start/End: Complemental strand, 15301660 - 15301362
Alignment:
| Q |
87 |
tacacgattgcaatgcaaaagttaccattctttgttgcttaaacaataatacatagatacctctttttctaaaagaatgctctaaaggcacttaatattt |
186 |
Q |
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| T |
15301660 |
tacacgattgcaatgcaaaagttaccattctttattgcttaaataataatacaaagatacctctttttctaaaagaatgctctgaaggcacttaatattt |
15301561 |
T |
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| Q |
187 |
tcctatttcttttttcaatacacatgaacagaagttcactnnnnnnntgcagcactactacacttgcattatggaaaattaaatccaagtg-tttagtga |
285 |
Q |
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| T |
15301560 |
tcctatttcttttttcaatacacatcaacagaagttcactaaaaaaatgcagcactactacacttgcattatggaaaattaaatccaagtgttttagtga |
15301461 |
T |
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| Q |
286 |
caataagctttaaacatgataacggattagtacaaattgctctccct-----ttttactaacatcatcattgaaagaacataaaagatgcttatatttt |
379 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
15301460 |
caataagctttaaacatgataacggattagtactaattgctatccctttcccttttactaacatcatcaatgaaagaacataaaagatgcttatatttt |
15301362 |
T |
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