View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1714_low_18 (Length: 378)

Name: NF1714_low_18
Description: NF1714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1714_low_18
NF1714_low_18
[»] chr5 (26 HSPs)
chr5 (1-199)||(9818697-9818895)
chr5 (72-166)||(18851078-18851171)
chr5 (66-176)||(31906245-31906354)
chr5 (79-169)||(38845436-38845525)
chr5 (71-166)||(6951300-6951394)
chr5 (71-177)||(42858093-42858198)
chr5 (78-164)||(18637282-18637365)
chr5 (78-179)||(13171762-13171863)
chr5 (72-179)||(36639920-36640026)
chr5 (70-142)||(28110432-28110503)
chr5 (82-164)||(22572410-22572491)
chr5 (78-163)||(22226238-22226322)
chr5 (80-164)||(14299328-14299411)
chr5 (70-179)||(34250348-34250453)
chr5 (67-164)||(11648080-11648174)
chr5 (70-167)||(28031168-28031263)
chr5 (78-159)||(2937584-2937664)
chr5 (78-179)||(5468756-5468857)
chr5 (78-159)||(15368376-15368456)
chr5 (65-164)||(39097244-39097342)
chr5 (99-164)||(3738129-3738195)
chr5 (110-179)||(3970433-3970503)
chr5 (78-179)||(42439619-42439720)
chr5 (72-113)||(10898769-10898810)
chr5 (78-167)||(36290030-36290118)
chr5 (70-138)||(35073432-35073499)
[»] chr8 (34 HSPs)
chr8 (70-179)||(32927875-32927983)
chr8 (71-164)||(15677810-15677903)
chr8 (78-170)||(13384656-13384747)
chr8 (71-162)||(35494990-35495080)
chr8 (66-164)||(26100136-26100233)
chr8 (70-164)||(32994236-32994329)
chr8 (79-179)||(4662906-4663005)
chr8 (78-173)||(38868487-38868581)
chr8 (77-179)||(44141051-44141152)
chr8 (70-179)||(16972058-16972166)
chr8 (78-179)||(37684388-37684488)
chr8 (70-166)||(38335855-38335950)
chr8 (110-179)||(10367978-10368047)
chr8 (78-164)||(18355852-18355935)
chr8 (78-164)||(30098908-30098991)
chr8 (70-177)||(35495245-35495351)
chr8 (111-170)||(36200166-36200225)
chr8 (111-164)||(7244635-7244688)
chr8 (110-184)||(43024815-43024890)
chr8 (113-179)||(26668535-26668601)
chr8 (71-153)||(40848026-40848107)
chr8 (111-184)||(36679732-36679805)
chr8 (78-166)||(6027051-6027138)
chr8 (111-167)||(11572492-11572548)
chr8 (70-142)||(32736482-32736553)
chr8 (111-162)||(10378232-10378283)
chr8 (78-113)||(32681306-32681341)
chr8 (67-113)||(5859054-5859100)
chr8 (137-179)||(42455895-42455937)
chr8 (127-179)||(1836262-1836315)
chr8 (127-175)||(11791783-11791832)
chr8 (111-176)||(38537392-38537457)
chr8 (69-184)||(32056342-32056455)
chr8 (78-162)||(32767387-32767470)
[»] chr4 (51 HSPs)
chr4 (70-179)||(32818364-32818472)
chr4 (71-164)||(14596687-14596781)
chr4 (70-179)||(35065046-35065154)
chr4 (70-165)||(8604616-8604710)
chr4 (77-179)||(50061629-50061730)
chr4 (71-164)||(21691207-21691299)
chr4 (91-164)||(30357510-30357582)
chr4 (76-184)||(49138762-49138869)
chr4 (70-160)||(16551959-16552046)
chr4 (78-179)||(46344835-46344933)
chr4 (78-175)||(9064218-9064314)
chr4 (79-179)||(26617451-26617550)
chr4 (70-142)||(45011894-45011965)
chr4 (70-179)||(9134593-9134699)
chr4 (78-179)||(25927291-25927389)
chr4 (69-164)||(31012731-31012826)
chr4 (122-179)||(11271582-11271640)
chr4 (111-184)||(18597017-18597091)
chr4 (78-179)||(25319030-25319131)
chr4 (110-159)||(16643981-16644030)
chr4 (70-179)||(55927764-55927872)
chr4 (78-164)||(33456372-33456455)
chr4 (113-173)||(39733674-39733733)
chr4 (113-164)||(1616389-1616439)
chr4 (110-184)||(8330093-8330168)
chr4 (110-179)||(2206376-2206446)
chr4 (110-164)||(30357645-30357699)
chr4 (78-160)||(52965856-52965937)
chr4 (70-164)||(53713555-53713648)
chr4 (78-135)||(4243414-4243470)
chr4 (71-164)||(39386631-39386723)
chr4 (111-164)||(55186996-55187049)
chr4 (110-177)||(2206502-2206570)
chr4 (68-164)||(2326803-2326898)
chr4 (111-179)||(2635146-2635214)
chr4 (73-177)||(33347167-33347270)
chr4 (86-150)||(42971912-42971975)
chr4 (124-179)||(54705437-54705493)
chr4 (131-177)||(8283419-8283466)
chr4 (122-184)||(22683841-22683904)
chr4 (84-179)||(30889770-30889864)
chr4 (110-177)||(51093243-51093310)
chr4 (78-164)||(20718615-20718700)
chr4 (145-179)||(33843661-33843695)
chr4 (110-164)||(43571476-43571530)
chr4 (127-184)||(43628095-43628153)
chr4 (111-184)||(20712848-20712921)
chr4 (82-179)||(53913583-53913679)
chr4 (128-175)||(35728931-35728979)
chr4 (70-146)||(41751266-41751341)
chr4 (114-177)||(45329832-45329896)
[»] chr6 (32 HSPs)
chr6 (78-179)||(4910891-4910991)
chr6 (72-179)||(5724626-5724732)
chr6 (78-164)||(765390-765473)
chr6 (67-177)||(852517-852626)
chr6 (70-164)||(3482044-3482137)
chr6 (65-139)||(17225875-17225948)
chr6 (116-177)||(7952748-7952809)
chr6 (78-179)||(26280588-26280688)
chr6 (110-178)||(30927027-30927095)
chr6 (78-177)||(1485148-1485246)
chr6 (88-179)||(6654102-6654192)
chr6 (81-164)||(25195848-25195930)
chr6 (78-184)||(16540085-16540190)
chr6 (78-179)||(25195368-25195466)
chr6 (111-164)||(6895984-6896037)
chr6 (111-179)||(2234498-2234566)
chr6 (71-145)||(34910964-34911035)
chr6 (78-177)||(34620871-34620969)
chr6 (78-177)||(34748308-34748406)
chr6 (70-135)||(947594-947656)
chr6 (70-164)||(993956-994049)
chr6 (65-179)||(8854903-8855016)
chr6 (70-164)||(8860502-8860595)
chr6 (78-167)||(434239-434327)
chr6 (112-164)||(3436917-3436969)
chr6 (71-135)||(9505797-9505860)
chr6 (78-154)||(31305849-31305924)
chr6 (71-135)||(34027412-34027475)
chr6 (117-164)||(4907961-4908008)
chr6 (70-164)||(7280488-7280581)
chr6 (111-164)||(31725774-31725827)
chr6 (108-164)||(10400726-10400782)
[»] chr2 (33 HSPs)
chr2 (78-171)||(42740968-42741060)
chr2 (66-179)||(33019146-33019258)
chr2 (110-182)||(30503189-30503261)
chr2 (70-179)||(42982525-42982635)
chr2 (70-164)||(43501123-43501214)
chr2 (70-179)||(10644586-10644694)
chr2 (70-171)||(11504056-11504155)
chr2 (70-176)||(16518765-16518869)
chr2 (110-184)||(21659697-21659771)
chr2 (110-179)||(2002728-2002797)
chr2 (80-177)||(31453368-31453464)
chr2 (70-176)||(5977166-5977273)
chr2 (70-179)||(11510936-11511044)
chr2 (78-141)||(33502258-33502320)
chr2 (78-164)||(44439251-44439337)
chr2 (70-179)||(1976858-1976967)
chr2 (72-170)||(8800694-8800790)
chr2 (78-182)||(3352056-3352159)
chr2 (72-159)||(5533027-5533113)
chr2 (85-164)||(12037059-12037137)
chr2 (78-179)||(22535981-22536081)
chr2 (144-179)||(680344-680379)
chr2 (110-184)||(3476462-3476537)
chr2 (72-159)||(4779111-4779197)
chr2 (73-164)||(13912785-13912875)
chr2 (78-141)||(32596012-32596074)
chr2 (70-164)||(4894151-4894244)
chr2 (110-139)||(7630216-7630245)
chr2 (127-179)||(37561689-37561742)
chr2 (111-179)||(10618975-10619043)
chr2 (83-131)||(11759866-11759913)
chr2 (128-164)||(21234576-21234612)
chr2 (78-179)||(37420197-37420299)
[»] chr1 (37 HSPs)
chr1 (70-161)||(30557505-30557593)
chr1 (78-160)||(11049252-11049333)
chr1 (70-184)||(1514321-1514434)
chr1 (78-164)||(7790644-7790729)
chr1 (78-155)||(7524120-7524196)
chr1 (71-179)||(28083883-28083990)
chr1 (65-175)||(48549003-48549110)
chr1 (78-179)||(6021787-6021887)
chr1 (70-166)||(3016158-3016253)
chr1 (70-161)||(30850393-30850483)
chr1 (78-173)||(38797631-38797725)
chr1 (66-139)||(213527-213599)
chr1 (71-179)||(47321902-47322008)
chr1 (74-164)||(3416078-3416167)
chr1 (78-164)||(28287338-28287423)
chr1 (70-159)||(34915069-34915157)
chr1 (110-179)||(31362238-31362303)
chr1 (110-158)||(51500867-51500915)
chr1 (78-177)||(10324940-10325038)
chr1 (66-164)||(47553935-47554033)
chr1 (70-139)||(26373538-26373603)
chr1 (78-164)||(11817319-11817403)
chr1 (110-160)||(3515820-3515870)
chr1 (110-156)||(27849145-27849191)
chr1 (86-164)||(30996040-30996117)
chr1 (70-170)||(2099681-2099781)
chr1 (75-164)||(8381964-8382052)
chr1 (111-179)||(30220243-30220312)
chr1 (93-182)||(34387710-34387798)
chr1 (70-158)||(32370025-32370112)
chr1 (88-164)||(50571282-50571357)
chr1 (86-159)||(40662991-40663061)
chr1 (111-161)||(47892422-47892472)
chr1 (92-177)||(15986237-15986321)
chr1 (110-162)||(33693020-33693073)
chr1 (111-159)||(36780150-36780199)
chr1 (71-155)||(44801592-44801675)
[»] scaffold0005 (1 HSPs)
scaffold0005 (71-164)||(220597-220691)
[»] chr7 (21 HSPs)
chr7 (70-179)||(40491561-40491669)
chr7 (79-164)||(41386818-41386902)
chr7 (70-164)||(38123660-38123753)
chr7 (123-164)||(17111855-17111896)
chr7 (110-171)||(30182329-30182390)
chr7 (71-184)||(15903527-15903637)
chr7 (70-164)||(45557363-45557456)
chr7 (85-143)||(45997706-45997764)
chr7 (111-164)||(22195862-22195915)
chr7 (111-179)||(27571845-27571913)
chr7 (113-172)||(28725088-28725147)
chr7 (111-177)||(5489880-5489946)
chr7 (72-166)||(24109455-24109548)
chr7 (111-179)||(44856843-44856909)
chr7 (82-177)||(1410947-1411041)
chr7 (70-137)||(25156225-25156291)
chr7 (130-164)||(26984533-26984567)
chr7 (114-179)||(45005003-45005068)
chr7 (128-164)||(35105156-35105192)
chr7 (70-142)||(42816462-42816533)
chr7 (124-152)||(45821725-45821753)
[»] chr3 (33 HSPs)
chr3 (78-164)||(52364049-52364134)
chr3 (72-178)||(32523336-32523442)
chr3 (70-155)||(31708233-31708317)
chr3 (78-164)||(4526130-4526215)
chr3 (70-179)||(25359568-25359676)
chr3 (75-179)||(35058344-35058448)
chr3 (111-166)||(35058063-35058118)
chr3 (70-149)||(52141242-52141320)
chr3 (70-184)||(37335028-37335141)
chr3 (75-184)||(40736537-40736644)
chr3 (66-159)||(31013021-31013113)
chr3 (112-177)||(40147885-40147950)
chr3 (123-179)||(7717367-7717423)
chr3 (120-179)||(1441424-1441483)
chr3 (78-145)||(46853536-46853602)
chr3 (110-176)||(44771680-44771746)
chr3 (110-159)||(42375528-42375577)
chr3 (110-159)||(42404242-42404291)
chr3 (88-159)||(31492770-31492839)
chr3 (111-179)||(44958640-44958708)
chr3 (70-179)||(5406889-5406995)
chr3 (72-159)||(27266790-27266876)
chr3 (75-179)||(44463557-44463662)
chr3 (111-164)||(32111992-32112046)
chr3 (70-179)||(35264405-35264513)
chr3 (111-164)||(40339224-40339278)
chr3 (111-164)||(41115395-41115449)
chr3 (70-139)||(41596143-41596211)
chr3 (110-166)||(3776518-3776574)
chr3 (95-135)||(3845132-3845172)
chr3 (73-137)||(35253464-35253527)
chr3 (65-169)||(42913047-42913150)
chr3 (70-102)||(46551262-46551294)
[»] scaffold0168 (1 HSPs)
scaffold0168 (111-184)||(31804-31877)
[»] scaffold0024 (1 HSPs)
scaffold0024 (78-179)||(23595-23695)
[»] scaffold0361 (1 HSPs)
scaffold0361 (70-164)||(14108-14200)


Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-103; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 9818895 - 9818697
Alignment:
Q  1 aagaatttattttaagtgaattgattcttactaaagtgattagttgaaagtaaagtgagataactgatgcattcatataaaagtgagttgaactataaat 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9818895 aagaatttattttgagtgaattgattcttactaaagtgattagttgaaagtaaagtgagataattgatgcattcatataaaagtgagttgaactataaat 9818796  T
Q  101 ttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaatcattttttgtgtgttaaccatt 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9818795 ttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaatcattttttgtgtgttaaccatt 9818697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 72 - 166
Target Start/End: Original strand, 18851078 - 18851171
Alignment:
Q  72 ttcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattat 166  Q
    ||||| |||||||||||| |||||||||| ||||| | |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  18851078 ttcatgtaaaagtgagtttaactataaatatgtgtgtgaaaa-tcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattat 18851171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 66 - 176
Target Start/End: Complemental strand, 31906354 - 31906245
Alignment:
Q  66 gatgcattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatta 165  Q
    |||| |||||| ||||||||||||||||||||||||| | |  |||| ||||||| || ||||||||| ||||||||||||||||||||| |||||||||    
T  31906354 gatgaattcatgtaaaagtgagttgaactataaatttatatg-aaaatatcaattatataatcaaaagttacaaatcatagcttcaagtaaaatcaatta 31906256  T
Q  166 tggaggcaaaa 176  Q
    | |||| ||||    
T  31906255 tagaggtaaaa 31906245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 79 - 169
Target Start/End: Complemental strand, 38845525 - 38845436
Alignment:
Q  79 aaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatgga 169  Q
    ||||||||||| ||||||| |||||||| | |||| |||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||    
T  38845525 aaaagtgagtttaactatatatttgtgtgtgaaaa-tcaattctagaatcaaaaactacaaatcttagcttcaagtagaatcaattttgga 38845436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 71 - 166
Target Start/End: Original strand, 6951300 - 6951394
Alignment:
Q  71 attcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattat 166  Q
    |||||| ||||||||| ||||| ||||||||| ||| || ||| |||||| ||||||||||||||||||||| || ||||||||||||||||||||    
T  6951300 attcatgtaaaagtgaattgaattataaatttatgtgtacaaa-tcaattatagaatcaaaagctacaaatcctaacttcaagtagaatcaattat 6951394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 71 - 177
Target Start/End: Complemental strand, 42858198 - 42858093
Alignment:
Q  71 attcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggag 170  Q
    |||||| ||||||||||||||||||||||||||||| |  |||||||||| |||||| ||||||| |||||| || ||||||||| |||||||| | |||    
T  42858198 attcatgtaaaagtgagttgaactataaatttgtgtgt-gaaaatcaattatagaattaaaagctccaaatcctaacttcaagtaaaatcaattctagag 42858100  T
Q  171 gcaaaat 177  Q
     ||||||    
T  42858099 tcaaaat 42858093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 78 - 164
Target Start/End: Complemental strand, 18637365 - 18637282
Alignment:
Q  78 taaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    ||||| ||||||||||||||||| |||||   ||||||||||||||||||||||||||||  ||| ||||||||||| |||||||||    
T  18637365 taaaattgagttgaactataaatgtgtgt---aaaaatcaattctagaatcaaaagctacttatcttagcttcaagtggaatcaatt 18637282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 78 - 179
Target Start/End: Original strand, 13171762 - 13171863
Alignment:
Q  78 taaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaat 177  Q
    ||||| |||||| |||||||||||| ||| | |||||||| || |||||||||||  |||||||| |  |||||||||||||||||| |||||||| |||    
T  13171762 taaaattgagtttaactataaatttttgtatgaaaaatcatttatagaatcaaaatttacaaatcttttcttcaagtagaatcaattttggaggcagaat 13171861  T
Q  178 ca 179  Q
    ||    
T  13171862 ca 13171863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 72 - 179
Target Start/End: Complemental strand, 36640026 - 36639920
Alignment:
Q  72 ttcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggagg 171  Q
    ||||| |||||||||| |||||  |||||||| || ||||||| |||||||||||| | ||||||||| |   |||||||||||||||| ||| ||||||    
T  36640026 ttcatgtaaaagtgaggtgaacattaaatttgagtgtaaaaaa-caattctagaattagaagctacaatttccagcttcaagtagaatctattttggagg 36639928  T
Q  172 caaaatca 179  Q
    ||||||||    
T  36639927 caaaatca 36639920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 70 - 142
Target Start/End: Original strand, 28110432 - 28110503
Alignment:
Q  70 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatc 142  Q
    |||| ||||||||||||||| |||||||||||||||| |  ||||||||||||| ||||||||| ||||||||    
T  28110432 catttatataaaagtgagttcaactataaatttgtgtgt-gaaaatcaattctaaaatcaaaagttacaaatc 28110503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 82 - 164
Target Start/End: Original strand, 22572410 - 22572491
Alignment:
Q  82 agtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    |||||||| |||||||||||||| | |||||  ||||||||| ||||||||||||||||||  ||||||||| | ||||||||    
T  22572410 agtgagttaaactataaatttgtttataaaat-tcaattctataatcaaaagctacaaatcccagcttcaagaacaatcaatt 22572491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 163
Target Start/End: Original strand, 22226238 - 22226322
Alignment:
Q  78 taaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaat 163  Q
    ||||||| ||| ||||| ||||||||||| |||||  | ||||||| |||||||||||||||||  || |||||||||||||||||    
T  22226238 taaaagttagtcgaactctaaatttgtgtgtaaaagtt-aattctaaaatcaaaagctacaaatactatcttcaagtagaatcaat 22226322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 80 - 164
Target Start/End: Complemental strand, 14299411 - 14299328
Alignment:
Q  80 aaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    ||||||| | ||||||||||||| ||| | ||||  |||||||||||| |||| ||||||||| || ||||||||||||||||||    
T  14299411 aaagtgaatcgaactataaatttatgtgtgaaaac-caattctagaataaaaaactacaaatcctaacttcaagtagaatcaatt 14299328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 179
Target Start/End: Original strand, 34250348 - 34250453
Alignment:
Q  70 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatgga 169  Q
    |||||||| |||||| |||||||| | ||||||||||  ||||   ||||| |||||||||||||||||| |  |||| |||||||||||||||| | ||    
T  34250348 cattcata-aaaagtaagttgaacaaaaaatttgtgtgaaaaa---caattgtagaatcaaaagctacaatttctagcatcaagtagaatcaattctaga 34250443  T
Q  170 ggcaaaatca 179  Q
    |||| |||||    
T  34250444 ggcataatca 34250453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 164
Target Start/End: Complemental strand, 11648174 - 11648080
Alignment:
Q  67 atgcattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    |||||||||| ||||| ||||||||| ||||  || |||| | |||| |||||| || ||||||||  |||||||| |||||||||||||||||||||    
T  11648174 atgcattcatgtaaaattgagttgaattata--ttcgtgtgtgaaaa-tcaattttataatcaaaatgtacaaatcttagcttcaagtagaatcaatt 11648080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 167
Target Start/End: Original strand, 28031168 - 28031263
Alignment:
Q  70 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatg 167  Q
    ||||||| ||||||| |||||| |||||||||||||||  |||| |||||| || ||||||||  || ||||  || |||||| ||||||||||||||    
T  28031168 cattcatgtaaaagtaagttgatctataaatttgtgtt--aaaagtcaattatataatcaaaaaatataaattttaacttcaaatagaatcaattatg 28031263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 159
Target Start/End: Original strand, 2937584 - 2937664
Alignment:
Q  78 taaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaat 159  Q
    ||||| ||||| ||| ||||||||||||| | | || ||||||||||||||||| |||||||||  |||||| |||||||||    
T  2937584 taaaaatgagtagaaatataaatttgtgtgttataa-tcaattctagaatcaaaggctacaaatagtagctttaagtagaat 2937664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 179
Target Start/End: Complemental strand, 5468857 - 5468756
Alignment:
Q  78 taaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaat 177  Q
    ||||| ||||||||||||||||||||||| | ||||   |||| || ||| ||||  || ||||| |||  |||||||||||||| |||||||||| |||    
T  5468857 taaaaatgagttgaactataaatttgtgtatgaaaatcaaattataaaattaaaaattataaatcctagtctcaagtagaatcaaatatggaggcagaat 5468758  T
Q  178 ca 179  Q
    ||    
T  5468757 ca 5468756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 159
Target Start/End: Complemental strand, 15368456 - 15368376
Alignment:
Q  78 taaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaat 159  Q
    ||||| ||||||||| ||||||||||||| | | || ||||||||| ||||||||| ||||| |  ||||||||||||||||    
T  15368456 taaaactgagttgaattataaatttgtgtgttagaa-tcaattctataatcaaaagttacaactagtagcttcaagtagaat 15368376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 65 - 164
Target Start/End: Complemental strand, 39097342 - 39097244
Alignment:
Q  65 tgatgcattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    |||| |||| || |||||||  |||||||| ||||||| ||| | |||| |||||| || ||| ||||| |||||||  |||||||||||||||||||||    
T  39097342 tgattcatttatgtaaaagtaggttgaactttaaatttatgtgtgaaaa-tcaattatataattaaaagttacaaattttagcttcaagtagaatcaatt 39097244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 164
Target Start/End: Original strand, 3738129 - 3738195
Alignment:
Q  99 atttgtgttta-aaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    ||||||||||| ||||||||||| ||||||||||| |||||| |  || |||||| |||||||||||    
T  3738129 atttgtgtttataaaaatcaattatagaatcaaaaactacaacttctaacttcaactagaatcaatt 3738195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 3970433 - 3970503
Alignment:
Q  110 aaaaatcaattctagaatcaaaagctacaaatcatagcttca-agtagaatcaattatggaggcaaaatca 179  Q
    ||||||||| | | || ||||||||||||| || |||||||| | ||||||||||| ||||||||||||||    
T  3970433 aaaaatcaagtttggagtcaaaagctacaattcctagcttcagattagaatcaattctggaggcaaaatca 3970503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 179
Target Start/End: Original strand, 42439619 - 42439720
Alignment:
Q  78 taaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaag-tagaatcaattatggaggcaaaa 176  Q
    |||||||||||||||| ||||| ||  || | ||||||||  | |||| |||||||||||| ||  |||||||||| ||||||||||| |||||| ||||    
T  42439619 taaaagtgagttgaacgataaaatttagtgt-aaaaatcacgtttagactcaaaagctacagattctagcttcaagttagaatcaattctggaggaaaaa 42439717  T
Q  177 tca 179  Q
    |||    
T  42439718 tca 42439720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 113
Target Start/End: Complemental strand, 10898810 - 10898769
Alignment:
Q  72 ttcatataaaagtgagttgaactataaatttgtgtttaaaaa 113  Q
    ||||| |||||||||||||||| |||||||||||| ||||||    
T  10898810 ttcatgtaaaagtgagttgaacaataaatttgtgtgtaaaaa 10898769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 167
Target Start/End: Complemental strand, 36290118 - 36290030
Alignment:
Q  78 taaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatg 167  Q
    ||||| ||||||||||||||||| ||||| | |||| |||| | | |||||||||   ||||||| || ||||||||| |||||||||||    
T  36290118 taaaactgagttgaactataaatatgtgtctgaaaa-tcaaatatggaatcaaaactaacaaatcttaacttcaagtataatcaattatg 36290030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 138
Target Start/End: Original strand, 35073432 - 35073499
Alignment:
Q  70 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctaca 138  Q
    |||| ||||||||||||||| |||| |||||||| || |  ||||||||||||| ||||| ||||||||    
T  35073432 catttatataaaagtgagttaaactttaaatttgagtgt-caaaatcaattctataatcataagctaca 35073499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 7e-34; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 70 - 179
Target Start/End: Complemental strand, 32927983 - 32927875
Alignment:
Q  70 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatgga 169  Q
    ||||||| ||||||||||||||||||||||||||||| |||||| | ||||||| |||||||||||||||||| ||||||||||||||||||| ||| ||    
T  32927983 cattcatgtaaaagtgagttgaactataaatttgtgtgtaaaaa-tgaattctataatcaaaagctacaaatcctagcttcaagtagaatcaactattga 32927885  T
Q  170 ggcaaaatca 179  Q
    ||||||||||    
T  32927884 ggcaaaatca 32927875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 71 - 164
Target Start/End: Original strand, 15677810 - 15677903
Alignment:
Q  71 attcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    |||||| ||| | ||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||    
T  15677810 attcatgtaacaatgagttgaactataaatttgtgtgtaaaaaatcaattctataatcaaaagctataaatcctagcttcaagtagaatcaatt 15677903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 78 - 170
Target Start/End: Original strand, 13384656 - 13384747
Alignment:
Q  78 taaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggag 170  Q
    ||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||  ||||||||| ||||||||||| |||||    
T  13384656 taaaagtgagttgaactataaatttgtgtgtgaaaa-tcaattctagaatcaaaagctacaaattttagcttcaaatagaatcaattttggag 13384747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 71 - 162
Target Start/End: Complemental strand, 35495080 - 35494990
Alignment:
Q  71 attcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaa 162  Q
    |||||| ||||||| |||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||    
T  35495080 attcatgtaaaagtaagttgaactatagatttgtgtgtaaaaaa-caattctagaatcaaaagctacaaatcctagcttcatgtagaatcaa 35494990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 66 - 164
Target Start/End: Original strand, 26100136 - 26100233
Alignment:
Q  66 gatgcattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    |||||||| || |||||||||||||||| |||||||||||| ||||| ||||||| ||||||||||||||||||||| ||||||||| ||||| |||||    
T  26100136 gatgcatttatgtaaaagtgagttgaaccataaatttgtgtgtaaaa-atcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaatt 26100233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 70 - 164
Target Start/End: Original strand, 32994236 - 32994329
Alignment:
Q  70 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    ||||||| ||||||| | ||| ||||||||||||||| ||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  32994236 cattcatgtaaaagtcatttgcactataaatttgtgtataaaa-atcaattctagactcaaaagctagaaatcatagcttcaagtagaatcaatt 32994329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 79 - 179
Target Start/End: Original strand, 4662906 - 4663005
Alignment:
Q  79 aaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaatc 178  Q
    ||||| ||||||||||||| |||||||| ||||| ||||||||||||| ||||||||||||||| |||||||||||||||| ||||  ||| ||||||||    
T  4662906 aaaagcgagttgaactatacatttgtgtgtaaaa-atcaattctagaaacaaaagctacaaatcctagcttcaagtagaataaattccggatgcaaaatc 4663004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 78 - 173
Target Start/End: Complemental strand, 38868581 - 38868487
Alignment:
Q  78 taaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggca 173  Q
    ||||| ||||||||||||||||||||||| | |||| |||||| ||||| ||||||||||||||| ||||||||||||||||||||| | ||||||    
T  38868581 taaaattgagttgaactataaatttgtgtgtgaaaa-tcaattatagaaccaaaagctacaaatcttagcttcaagtagaatcaattttagaggca 38868487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 77 - 179
Target Start/End: Original strand, 44141051 - 44141152
Alignment:
Q  77 ataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaa 176  Q
    ||||||| ||||||||||||||| || ||| | |||| |||| ||||||||||||| ||||||||| || |||||||||||||||||| |||||||||||    
T  44141051 ataaaagcgagttgaactataaaattatgtgtgaaaa-tcaactctagaatcaaaaactacaaatcctaacttcaagtagaatcaattttggaggcaaaa 44141149  T
Q  177 tca 179  Q
    |||    
T  44141150 tca 44141152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 70 - 179
Target Start/End: Original strand, 16972058 - 16972166
Alignment:
Q  70 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatgga 169  Q
    ||||||| ||||||||| |||||| |||||||||||||| |||||||||||||| ||| |||| ||||||||  ||||||||| || |||||| | || |    
T  16972058 cattcatgtaaaagtgatttgaacaataaatttgtgttt-aaaaatcaattctaaaattaaaaactacaaattctagcttcaaatacaatcaactctgaa 16972156  T
Q  170 ggcaaaatca 179  Q
    ||||||||||    
T  16972157 ggcaaaatca 16972166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 78 - 179
Target Start/End: Complemental strand, 37684488 - 37684388
Alignment:
Q  78 taaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaat 177  Q
    ||||||||||||||| ||||||||| ||  |  |||||||||| ||||||||||||| ||||||| || |||||||||||||||||| ||||| ||||||    
T  37684488 taaaagtgagttgaattataaatttttgcat-taaaatcaattttagaatcaaaagccacaaatcctaacttcaagtagaatcaattctggagacaaaat 37684390  T
Q  178 ca 179  Q
    ||    
T  37684389 ca 37684388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 166
Target Start/End: Original strand, 38335855 - 38335950
Alignment:
Q  70 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattat 166  Q
    ||||||| ||||||||||||  | ||||||||||||  ||||| |||||||||| |||||||||| ||||||| ||||||||| | |||||||||||    
T  38335855 cattcatgtaaaagtgagttagaatataaatttgtgcgtaaaa-atcaattctaaaatcaaaagcaacaaatcttagcttcaactggaatcaattat 38335950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 10368047 - 10367978
Alignment:
Q  110 aaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaatca 179  Q
    |||||| ||||||||||||||||||| |||||| |||| |||||||||| ||||| ||||||| ||||||    
T  10368047 aaaaatgaattctagaatcaaaagctgcaaatcctagcctcaagtagaaccaattgtggaggcgaaatca 10367978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 78 - 164
Target Start/End: Original strand, 18355852 - 18355935
Alignment:
Q  78 taaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    |||||| |||||||||| |||||||||||   ||||||||||| ||||||||||||  ||||||| |||||||||  ||||||||||    
T  18355852 taaaagggagttgaactttaaatttgtgt---aaaaatcaattttagaatcaaaagacacaaatcctagcttcaatcagaatcaatt 18355935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 78 - 164
Target Start/End: Complemental strand, 30098991 - 30098908
Alignment:
Q  78 taaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    |||||||||||| |||||||||||| |||   |||||| |||||||||||| ||||||||||||  ||||||||| || ||||||||    
T  30098991 taaaagtgagttaaactataaatttttgt---aaaaattaattctagaatcgaaagctacaaattctagcttcaaataaaatcaatt 30098908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 177
Target Start/End: Complemental strand, 35495351 - 35495245
Alignment:
Q  70 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatgga 169  Q
    |||||| |||||||||| |||||| ||||||||| || |||||| |||||| |||||||| || ||| | |   ||||||||||||||||||||| | ||    
T  35495351 cattcaaataaaagtgatttgaacaataaatttgagtataaaaa-tcaattatagaatcagaatctagatagtgtagcttcaagtagaatcaattctaga 35495253  T
Q  170 ggcaaaat 177  Q
    ||||||||    
T  35495252 ggcaaaat 35495245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 170
Target Start/End: Original strand, 36200166 - 36200225
Alignment:
Q  111 aaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggag 170  Q
    |||||||||||||||||||||| | |||||||||| |||||||| ||||||||| |||||    
T  36200166 aaaatcaattctagaatcaaaatcgacaaatcataacttcaagttgaatcaattctggag 36200225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 7244635 - 7244688
Alignment:
Q  111 aaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    |||||||||||||||||||||| ||||| ||| ||| |||||||||||||||||    
T  7244635 aaaatcaattctagaatcaaaaactacatatcttagtttcaagtagaatcaatt 7244688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 184
Target Start/End: Complemental strand, 43024890 - 43024815
Alignment:
Q  110 aaaaatcaattctagaatcaaaagctacaaatcatag-cttcaagtagaatcaattatggaggcaaaatcattttt 184  Q
    ||||||||||| |||||||| ||||||||||||||||  |||||||| |||||||| |  ||||||||||| ||||    
T  43024890 aaaaatcaattttagaatcacaagctacaaatcatagttttcaagtataatcaattctacaggcaaaatcaatttt 43024815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 179
Target Start/End: Complemental strand, 26668601 - 26668535
Alignment:
Q  113 aatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaatca 179  Q
    |||||||| |||||| |||| ||||||||  ||| || ||||||||||||||||||||||| |||||    
T  26668601 aatcaattatagaataaaaaactacaaattgtagttttaagtagaatcaattatggaggcagaatca 26668535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 153
Target Start/End: Complemental strand, 40848107 - 40848026
Alignment:
Q  71 attcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaag 153  Q
    |||||||||||| |||||| || ||||| ||||||| | |||| ||||||||| ||||||||| || |||| |||||||||||    
T  40848107 attcatataaaaatgagtttaattataagtttgtgtgtgaaaa-tcaattctaaaatcaaaagatataaattatagcttcaag 40848026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 111 - 184
Target Start/End: Complemental strand, 36679805 - 36679732
Alignment:
Q  111 aaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaatcattttt 184  Q
    ||||||||||| ||||||| ||| ||||||||||| ||| || | |||| ||||||||| ||||||||| ||||    
T  36679805 aaaatcaattccagaatcagaagttacaaatcataactttaaattgaattaattatggaagcaaaatcactttt 36679732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 166
Target Start/End: Original strand, 6027051 - 6027138
Alignment:
Q  78 taaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattat 166  Q
    ||||| |||||| |||| ||||||||| | | |||| |||||||||||||||||||||||| |   || || |||||||||||||||||    
T  6027051 taaaaatgagttaaactgtaaatttgtatatgaaaa-tcaattctagaatcaaaagctacatactttaactacaagtagaatcaattat 6027138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 167
Target Start/End: Original strand, 11572492 - 11572548
Alignment:
Q  111 aaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatg 167  Q
    |||||||||| || |||||||| ||||||||  |||||||||||| |||||||||||    
T  11572492 aaaatcaattttataatcaaaatctacaaattttagcttcaagtataatcaattatg 11572548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 142
Target Start/End: Complemental strand, 32736553 - 32736482
Alignment:
Q  70 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatc 142  Q
    ||||||| ||||||||| ||||||||||||||||||| | |||||| |||| || ||| |||| |||||||||    
T  32736553 cattcatgtaaaagtgaattgaactataaatttgtgtgt-aaaaattaattttaaaataaaaaactacaaatc 32736482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 111 - 162
Target Start/End: Original strand, 10378232 - 10378283
Alignment:
Q  111 aaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaa 162  Q
    ||||||||||||| ||| |||| ||||||||||||| || ||||||||||||    
T  10378232 aaaatcaattctaaaattaaaacctacaaatcatagttttaagtagaatcaa 10378283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 78 - 113
Target Start/End: Original strand, 32681306 - 32681341
Alignment:
Q  78 taaaagtgagttgaactataaatttgtgtttaaaaa 113  Q
    ||||||||||||||| ||||||||||||||||||||    
T  32681306 taaaagtgagttgaattataaatttgtgtttaaaaa 32681341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 113
Target Start/End: Original strand, 5859054 - 5859100
Alignment:
Q  67 atgcattcatataaaagtgagttgaactataaatttgtgtttaaaaa 113  Q
    |||||||||| |||||||||||||||| ||||| |||||| ||||||    
T  5859054 atgcattcatgtaaaagtgagttgaaccataaaattgtgtgtaaaaa 5859100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 179
Target Start/End: Complemental strand, 42455937 - 42455895
Alignment:
Q  137 caaatcatagcttcaagtagaatcaattatggaggcaaaatca 179  Q
    ||||| ||||| ||||||||||||||||||||||||| |||||    
T  42455937 caaattatagcatcaagtagaatcaattatggaggcagaatca 42455895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 1836262 - 1836315
Alignment:
Q  127 tcaaaagctacaaatcatagcttcaag-tagaatcaattatggaggcaaaatca 179  Q
    |||||||||||| ||| |||||||||| ||||||||||| | ||||||||||||    
T  1836262 tcaaaagctacacatcctagcttcaagttagaatcaattttagaggcaaaatca 1836315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 175
Target Start/End: Original strand, 11791783 - 11791832
Alignment:
Q  127 tcaaaagctacaaatcatagcttcaa-gtagaatcaattatggaggcaaa 175  Q
    |||||||||||||||| |||||| || ||||||||| |||||||||||||    
T  11791783 tcaaaagctacaaatcctagcttgaaggtagaatcagttatggaggcaaa 11791832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 176
Target Start/End: Original strand, 38537392 - 38537457
Alignment:
Q  111 aaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaa 176  Q
    |||||||| |||||||||| ||| ||||  |  ||||||||||||||| ||||| |||||||||||    
T  38537392 aaaatcaactctagaatcagaaggtacagtttctagcttcaagtagaaacaattttggaggcaaaa 38537457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 184
Target Start/End: Complemental strand, 32056455 - 32056342
Alignment:
Q  69 gcattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaag-tagaatcaattatg 167  Q
    |||||||| ||||||||||||||||  || | ||| || | |||||||||||||||||| | ||||| ||| |  |||||| ||| ||||||||||||||    
T  32056455 gcattcatgtaaaagtgagttgaacagtata-ttgggtgt-aaaaatcaattctagaat-agaagctccaatttctagcttaaagttagaatcaattatg 32056359  T
Q  168 gaggcaaaatcattttt 184  Q
    |||| ||||||| ||||    
T  32056358 gaggtaaaatcaatttt 32056342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 162
Target Start/End: Complemental strand, 32767470 - 32767387
Alignment:
Q  78 taaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaa 162  Q
    |||||||||||||||| ||||||||  || |||||  ||| |||| |||||||||||||  |||| |||||||||| | ||||||    
T  32767470 taaaagtgagttgaacaataaatttaagtgtaaaag-tcagttctcgaatcaaaagctatgaatcttagcttcaagcataatcaa 32767387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 51)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 70 - 179
Target Start/End: Original strand, 32818364 - 32818472
Alignment:
Q  70 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatgga 169  Q
    ||||||| ||||||| |||||||||||||||||||||  |||| ||||||||||||||||||||||||||||  ||||||||| ||||||||||| ||||    
T  32818364 cattcatgtaaaagttagttgaactataaatttgtgtgcaaaa-atcaattctagaatcaaaagctacaaattctagcttcaaatagaatcaattctgga 32818462  T
Q  170 ggcaaaatca 179  Q
    ||||||||||    
T  32818463 ggcaaaatca 32818472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 71 - 164
Target Start/End: Complemental strand, 14596781 - 14596687
Alignment:
Q  71 attcatataaaagtgagttgaactataaatttgtgttta-aaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    |||||||||||||||| ||||||||||||||| ||| |  ||||||||||||||||||||||| || |||| |||||||||||||||||||||||    
T  14596781 attcatataaaagtgaattgaactataaatttttgtatctaaaaatcaattctagaatcaaaaactgcaaaacatagcttcaagtagaatcaatt 14596687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 70 - 179
Target Start/End: Complemental strand, 35065154 - 35065046
Alignment:
Q  70 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatgga 169  Q
    ||||||| ||||||||||| ||  ||||||||||||| |||||| |||||||||||||||||||  ||||||  |||||||||||| |||||||||| ||    
T  35065154 cattcatgtaaaagtgagtggagatataaatttgtgtgtaaaaa-tcaattctagaatcaaaagtcacaaatactagcttcaagtaaaatcaattattga 35065056  T
Q  170 ggcaaaatca 179  Q
    ||||||||||    
T  35065055 ggcaaaatca 35065046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 70 - 165
Target Start/End: Original strand, 8604616 - 8604710
Alignment:
Q  70 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatta 165  Q
    ||||||| ||||||||  || |||||||||||||||| | |||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  8604616 cattcatgtaaaagtgcattcaactataaatttgtgtgtgaaaa-tcaattctagaatcgaaagctacaaatcttagcttcaagtagaatcaatta 8604710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 77 - 179
Target Start/End: Original strand, 50061629 - 50061730
Alignment:
Q  77 ataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaa 176  Q
    ||||||| ||||||||| ||||| || ||| | |||| |||| ||||||||||||| ||||||||| || |||||||||||||||||| |||||||||||    
T  50061629 ataaaagcgagttgaaccataaaattatgtgtgaaaa-tcaactctagaatcaaaaactacaaatcctaacttcaagtagaatcaattttggaggcaaaa 50061727  T
Q  177 tca 179  Q
    |||    
T  50061728 tca 50061730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 71 - 164
Target Start/End: Original strand, 21691207 - 21691299
Alignment:
Q  71 attcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    |||||| |||||||| |||||||||||||||||||| | |||| ||||||||| || ||||||||||||||| ||| ||||||| |||||||||    
T  21691207 attcatgtaaaagtgtgttgaactataaatttgtgtgtgaaaa-tcaattctacaaccaaaagctacaaatcttagtttcaagttgaatcaatt 21691299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 91 - 164
Target Start/End: Complemental strand, 30357582 - 30357510
Alignment:
Q  91 aactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    |||||||||||||||| |||||| |||||| || ||||||||||||||||||| ||||||||||||||||||||    
T  30357582 aactataaatttgtgtgtaaaaa-tcaattatataatcaaaagctacaaatcacagcttcaagtagaatcaatt 30357510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 76 - 184
Target Start/End: Original strand, 49138762 - 49138869
Alignment:
Q  76 tataaaagt-gagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaa 174  Q
    ||||||||| ||||||||||||||  |||||| ||||| ||||||| |||||||||||| |||||||| |||||||||||||||| || | |||||||||    
T  49138762 tataaaagttgagttgaactataagcttgtgtataaaa-atcaattttagaatcaaaagttacaaatcctagcttcaagtagaat-aagtttggaggcaa 49138859  T
Q  175 aatcattttt 184  Q
    ||||| ||||    
T  49138860 aatcaatttt 49138869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 70 - 160
Target Start/End: Complemental strand, 16552046 - 16551959
Alignment:
Q  70 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatc 160  Q
    ||||||| |||||||||||||||||||||||||||||    ||||||||||||||||  |||| ||||||||| |||||||||| ||||||    
T  16552046 cattcatgtaaaagtgagttgaactataaatttgtgt---gaaaatcaattctagaactaaaaactacaaatcctagcttcaaggagaatc 16551959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 78 - 179
Target Start/End: Original strand, 46344835 - 46344933
Alignment:
Q  78 taaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaat 177  Q
    ||||||||||| ||||| ||||||||||||  |||||||| ||| |||||||||||||  ||||  || ||||||||||||| |||||||||||||||||    
T  46344835 taaaagtgagtcgaactttaaatttgtgtt--aaaaatcacttccagaatcaaaagctggaaattctaacttcaagtagaat-aattatggaggcaaaat 46344931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 78 - 175
Target Start/End: Complemental strand, 9064314 - 9064218
Alignment:
Q  78 taaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaa 175  Q
    ||||||||||||||||  |||| ||| || | |||| |||||||||||||||||| ||||||||  ||| ||||||||||||||||||||| ||||||    
T  9064314 taaaagtgagttgaaccgtaaacttgagtgtgaaaa-tcaattctagaatcaaaaactacaaattctagtttcaagtagaatcaattatggtggcaaa 9064218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 179
Target Start/End: Complemental strand, 26617550 - 26617451
Alignment:
Q  79 aaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaatc 178  Q
    |||| ||||||||| ||||||||| | | |||||| |||||| || |||||||||||||| ||  |||||||||||||||||| || |||||||||||||    
T  26617550 aaaactgagttgaattataaatttatctataaaaa-tcaattttataatcaaaagctacagattctagcttcaagtagaatcatttttggaggcaaaatc 26617452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 142
Target Start/End: Complemental strand, 45011965 - 45011894
Alignment:
Q  70 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatc 142  Q
    |||||||||||||||||||  || ||||||||||||| | |||| ||||||||||||||||||||||||||||    
T  45011965 cattcatataaaagtgagtaaaattataaatttgtgtgtgaaaa-tcaattctagaatcaaaagctacaaatc 45011894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 70 - 179
Target Start/End: Complemental strand, 9134699 - 9134593
Alignment:
Q  70 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatgga 169  Q
    ||||||| ||||||  | |||| ||||||||||||||    ||||||||||||| |||||||||||||||||  ||||||||||||| ||||||| ||||    
T  9134699 cattcatttaaaagcaaattgagctataaatttgtgtg---aaaatcaattctaaaatcaaaagctacaaattttagcttcaagtaggatcaattctgga 9134603  T
Q  170 ggcaaaatca 179  Q
     | |||||||    
T  9134602 agtaaaatca 9134593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 179
Target Start/End: Complemental strand, 25927389 - 25927291
Alignment:
Q  78 taaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaat 177  Q
    ||||||||| |||| | |||||||| |||   |||||||||||||  ||||| |||||||||||| || || ||| |||||||||||||||||||| |||    
T  25927389 taaaagtgaattgagccataaatttatgt---aaaaatcaattctgaaatcataagctacaaatcttaactccaaatagaatcaattatggaggcataat 25927293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 164
Target Start/End: Original strand, 31012731 - 31012826
Alignment:
Q  69 gcattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    ||||| || ||||| ||||||||||||||||| | ||| | |||||||||||||| ||| |||| ||||||||| ||| ||  |||||||||||||    
T  31012731 gcatttatgtaaaaatgagttgaactataaatatatgtgtgaaaaatcaattctaaaattaaaaactacaaatcctagttttgagtagaatcaatt 31012826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 11271582 - 11271640
Alignment:
Q  122 tagaatcaaaagctacaaatcatagcttcaag-tagaatcaattatggaggcaaaatca 179  Q
    |||| |||||||||||||||| |||||||||| ||||||||||| ||||||||||||||    
T  11271582 tagactcaaaagctacaaatcctagcttcaagttagaatcaattctggaggcaaaatca 11271640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 111 - 184
Target Start/End: Complemental strand, 18597091 - 18597017
Alignment:
Q  111 aaaatcaattctagaatcaaaagctacaaatcatagcttcaag-tagaatcaattatggaggcaaaatcattttt 184  Q
    |||||||||| |||||||||||| | ||||| ||||||||||| ||||||||||| |||||| ||||||| ||||    
T  18597091 aaaatcaattatagaatcaaaaggttcaaattatagcttcaagttagaatcaattctggaggtaaaatcaatttt 18597017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 78 - 179
Target Start/End: Complemental strand, 25319131 - 25319030
Alignment:
Q  78 taaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaag-tagaatcaattatggaggcaaaa 176  Q
    |||||||||||||||| ||||||||  || ||||||||||  | |||| || ||||||||||||| || ||||||| ||||||||||| ||||| |||||    
T  25319131 taaaagtgagttgaacaataaatttcagtataaaaaatcacatttagactc-aaagctacaaatcctaccttcaagttagaatcaattctggagacaaaa 25319033  T
Q  177 tca 179  Q
    |||    
T  25319032 tca 25319030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 16644030 - 16643981
Alignment:
Q  110 aaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaat 159  Q
    ||||||||||||||||||||||| ||| |||| |||||||||||||||||    
T  16644030 aaaaatcaattctagaatcaaaatctataaattatagcttcaagtagaat 16643981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 179
Target Start/End: Original strand, 55927764 - 55927872
Alignment:
Q  70 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatgga 169  Q
    ||||||| ||||||||| |||||| ||||||||| || | |  | ||||||||||||||| ||||||||| |  |||| |||||| ||||||||| || |    
T  55927764 cattcatgtaaaagtgacttgaacaataaatttgagtgtgacga-tcaattctagaatcagaagctacaatttttagcctcaagtggaatcaattctgaa 55927862  T
Q  170 ggcaaaatca 179  Q
    ||||||||||    
T  55927863 ggcaaaatca 55927872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 164
Target Start/End: Complemental strand, 33456455 - 33456372
Alignment:
Q  78 taaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    ||||||||| |||||||||| |||| |||    |||||||||| ||||||||||||||||||||||||| || || |||||| ||||    
T  33456455 taaaagtgaattgaactatagatttatgtg---aaaatcaattatagaatcaaaagctacaaatcatagttttaaatagaataaatt 33456372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 113 - 173
Target Start/End: Original strand, 39733674 - 39733733
Alignment:
Q  113 aatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggca 173  Q
    ||||||||||| |||||||||||||||||  || | |||||||||||||||||||||||||    
T  39733674 aatcaattctacaatcaaaagctacaaattgtaac-tcaagtagaatcaattatggaggca 39733733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 164
Target Start/End: Complemental strand, 1616439 - 1616389
Alignment:
Q  113 aatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    |||||||||||||||||||||||||||||  |||||| ||||||||||||||    
T  1616439 aatcaattctagaatcaaaagctacaaattgtagctt-aagtagaatcaatt 1616389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 184
Target Start/End: Complemental strand, 8330168 - 8330093
Alignment:
Q  110 aaaaatcaattctagaatcaaaagctacaaatcatagcttcaag-tagaatcaattatggaggcaaaatcattttt 184  Q
    ||||||||||| |||||||||||||| ||| |  |||||||||| ||||||| |||||||||||| ||||| ||||    
T  8330168 aaaaatcaattatagaatcaaaagctccaatttctagcttcaagttagaatccattatggaggcagaatcaatttt 8330093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 2206376 - 2206446
Alignment:
Q  110 aaaaatcaattctagaatcaaaagctacaaatcatagcttcaag-tagaatcaattatggaggcaaaatca 179  Q
    |||||||||| ||||||||||||||| ||| |  |||||||||| ||||||||||| |||||| |||||||    
T  2206376 aaaaatcaatcctagaatcaaaagctccaatttttagcttcaagctagaatcaattttggaggaaaaatca 2206446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 164
Target Start/End: Complemental strand, 30357699 - 30357645
Alignment:
Q  110 aaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    |||||| |||| || |||||||||||||| ||||||||||||| |||||||||||    
T  30357699 aaaaataaattatataatcaaaagctacagatcatagcttcaattagaatcaatt 30357645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 160
Target Start/End: Original strand, 52965856 - 52965937
Alignment:
Q  78 taaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatc 160  Q
    ||||||||||||||| ||||||||| ||| | | || |||||| ||||||||||||||| ||||  || ||||||||||||||    
T  52965856 taaaagtgagttgaattataaatttatgtgttagaa-tcaattttagaatcaaaagctataaatagtaacttcaagtagaatc 52965937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 164
Target Start/End: Original strand, 53713555 - 53713648
Alignment:
Q  70 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    ||||||| |||||||||||||||||||| || | | | |  ||  |||||| ||||||||||||||||||||| |||||||||||| ||| ||||    
T  53713555 cattcatgtaaaagtgagttgaactatatatatttatgtggaag-tcaattatagaatcaaaagctacaaatcgtagcttcaagtaaaattaatt 53713648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 4243470 - 4243414
Alignment:
Q  78 taaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagct 135  Q
    ||||||||||| |||| ||||||||| || |||||| |||||||||||||||||||||    
T  4243470 taaaagtgagtagaacaataaatttgagtgtaaaaa-tcaattctagaatcaaaagct 4243414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 164
Target Start/End: Complemental strand, 39386723 - 39386631
Alignment:
Q  71 attcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    |||||| ||||||||||||||||| ||||| ||||| |  |||||||||| |||||| ||| | || ||||  |||||| ||||||||||||||    
T  39386723 attcatgtaaaagtgagttgaactttaaatatgtgtgt-gaaaatcaattatagaattaaatgttataaattttagctttaagtagaatcaatt 39386631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 55186996 - 55187049
Alignment:
Q  111 aaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    ||||||||||||| ||| ||||| |||||||| || ||||||||||||||||||    
T  55186996 aaaatcaattctataattaaaagttacaaatcctaacttcaagtagaatcaatt 55187049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 177
Target Start/End: Complemental strand, 2206570 - 2206502
Alignment:
Q  110 aaaaatcaattctagaatcaaaagctacaaatcatagcttcaag-tagaatcaattatggaggcaaaat 177  Q
    ||||| ||||| ||||||||||||||||||    |||||||||| ||||||||||||||||| ||||||    
T  2206570 aaaaaacaattatagaatcaaaagctacaatgtttagcttcaagttagaatcaattatggagccaaaat 2206502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 164
Target Start/End: Original strand, 2326803 - 2326898
Alignment:
Q  68 tgcattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    ||||||||| |||| |||||||||||| ||||| |||||||  | ||| ||||||||||| ||||| |||||||  ||| ||| | |||||||||||    
T  2326803 tgcattcatgtaaaggtgagttgaactttaaatatgtgttt-gagaattaattctagaattaaaagttacaaattctagtttcgaatagaatcaatt 2326898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 179
Target Start/End: Complemental strand, 2635214 - 2635146
Alignment:
Q  111 aaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaatca 179  Q
    ||||||||||||||| ||||||||| |||    |||||||||| | |||||||| ||||||||||||||    
T  2635214 aaaatcaattctagactcaaaagctccaatctctagcttcaagcataatcaattctggaggcaaaatca 2635146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 177
Target Start/End: Original strand, 33347167 - 33347270
Alignment:
Q  73 tcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggc 172  Q
    |||| ||||||||| |||||||||| ||||||||  ||||| | |||| | |||| ||||  |||||||| || ||||||||||||| |||| | |||||    
T  33347167 tcatgtaaaagtgaattgaactatatatttgtgtgcaaaaatt-aattatcgaataaaaaattacaaatcctaccttcaagtagaattaattctagaggc 33347265  T
Q  173 aaaat 177  Q
    |||||    
T  33347266 aaaat 33347270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 150
Target Start/End: Original strand, 42971912 - 42971975
Alignment:
Q  86 agttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttc 150  Q
    ||||||||||||||||||| | ||||| |||||||||| || ||||||||| |||| ||||||||    
T  42971912 agttgaactataaatttgtatgtaaaa-atcaattctaaaagcaaaagctataaattatagcttc 42971975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 54705437 - 54705493
Alignment:
Q  124 gaatcaaaagctacaaatcatagcttcaag-tagaatcaattatggaggcaaaatca 179  Q
    ||||||||||||||||| | |||||||||| ||| ||||||||| ||||||||||||    
T  54705437 gaatcaaaagctacaaaccctagcttcaagttagtatcaattattgaggcaaaatca 54705493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 131 - 177
Target Start/End: Original strand, 8283419 - 8283466
Alignment:
Q  131 aagctacaaatcatagcttcaag-tagaatcaattatggaggcaaaat 177  Q
    ||||||||||||||||||||||| ||||||||||  ||||||||||||    
T  8283419 aagctacaaatcatagcttcaagttagaatcaatgctggaggcaaaat 8283466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 22683904 - 22683841
Alignment:
Q  122 tagaatcaaaagctacaaatcatagcttcaag-tagaatcaattatggaggcaaaatcattttt 184  Q
    |||| |||||||||||| |||||||||||||| || ||| |||| |||||||||||||| ||||    
T  22683904 tagactcaaaagctacagatcatagcttcaagttataattaattctggaggcaaaatcaatttt 22683841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 84 - 179
Target Start/End: Complemental strand, 30889864 - 30889770
Alignment:
Q  84 tgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaatca 179  Q
    |||||| ||||||||||| | || |||||| ||||||||| ||||||||  |||||||| ||  | ||||||||||||||| | ||| ||||||||    
T  30889864 tgagttaaactataaattggagtataaaaa-tcaattctacaatcaaaatttacaaatcttaattgcaagtagaatcaattctagagacaaaatca 30889770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 110 - 177
Target Start/End: Complemental strand, 51093310 - 51093243
Alignment:
Q  110 aaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaat 177  Q
    ||||||||||| ||||  |||||||| |||||  ||||||||  ||||||||||||| ||||||||||    
T  51093310 aaaaatcaattgtagaggcaaaagctccaaattctagcttcagttagaatcaattatagaggcaaaat 51093243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 164
Target Start/End: Complemental strand, 20718700 - 20718615
Alignment:
Q  78 taaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    ||||||| | ||||||||||| |||||||  ||||| |||||| || ||| |||||||||||||||||  ||||| || ||||||||    
T  20718700 taaaagtaacttgaactataattttgtgtagaaaaa-tcaattttataattaaaagctacaaatcataaattcaaataaaatcaatt 20718615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 179
Target Start/End: Complemental strand, 33843695 - 33843661
Alignment:
Q  145 agcttcaagtagaatcaattatggaggcaaaatca 179  Q
    |||||||||||||||||||| ||||||||||||||    
T  33843695 agcttcaagtagaatcaattttggaggcaaaatca 33843661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 164
Target Start/End: Complemental strand, 43571530 - 43571476
Alignment:
Q  110 aaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    ||||||||| |||||||| ||||| || |||| ||||||||||||| ||||||||    
T  43571530 aaaaatcaactctagaattaaaagttaaaaattatagcttcaagtataatcaatt 43571476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 43628153 - 43628095
Alignment:
Q  127 tcaaaagctacaaatcatagcttcaagt-agaatcaattatggaggcaaaatcattttt 184  Q
    |||||| ||||||||| ||||||||| | |||||||| |||||| ||||||||||||||    
T  43628153 tcaaaatctacaaatcttagcttcaacttagaatcaactatggaagcaaaatcattttt 43628095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 184
Target Start/End: Original strand, 20712848 - 20712921
Alignment:
Q  111 aaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaatcattttt 184  Q
    ||||||||||||  ||| |||| ||||||||  |||||||||||||||||  ||  ||||||||||||| ||||    
T  20712848 aaaatcaattcttcaataaaaaactacaaattttagcttcaagtagaatcgtttcgggaggcaaaatcaatttt 20712921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 179
Target Start/End: Original strand, 53913583 - 53913679
Alignment:
Q  82 agtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaatca 179  Q
    |||||||| |||||||||||| ||| | |||| |||||| |||||||| ||   | |||||||| ||| ||||| ||||||||||  |||||||||||    
T  53913583 agtgagtttaactataaatttatgtgtgaaaa-tcaattatagaatcacaaatgataaatcatatctttaagtaaaatcaattataaaggcaaaatca 53913679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 175
Target Start/End: Complemental strand, 35728979 - 35728931
Alignment:
Q  128 caaaagctacaaatcatagcttcaag-tagaatcaattatggaggcaaa 175  Q
    |||||| ||||||||||||||||||| |||||| |||||| ||||||||    
T  35728979 caaaaggtacaaatcatagcttcaagttagaattaattatagaggcaaa 35728931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 146
Target Start/End: Original strand, 41751266 - 41751341
Alignment:
Q  70 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatag 146  Q
    ||||||| ||||| ||| || ||| ||||||||  |||||||| |||||||||||||||||||  ||||||| ||||    
T  41751266 cattcatgtaaaactgaattaaacaataaatttaagtttaaaa-atcaattctagaatcaaaatatacaaattatag 41751341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 177
Target Start/End: Complemental strand, 45329896 - 45329832
Alignment:
Q  114 atcaattctagaatcaaaagctacaaatcatagcttcaa-gtagaatcaattatggaggcaaaat 177  Q
    ||||||| |||||||||||| | ||| | |||| ||||| | |||||||||||||||||||||||    
T  45329896 atcaattttagaatcaaaagattcaatttatagattcaaagaagaatcaattatggaggcaaaat 45329832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 78 - 179
Target Start/End: Complemental strand, 4910991 - 4910891
Alignment:
Q  78 taaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaat 177  Q
    ||||||||||| ||||||||||||||| | | |||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||    
T  4910991 taaaagtgagtcgaactataaatttgtatgtgaaaa-tcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatttttgaggcagaat 4910893  T
Q  178 ca 179  Q
    ||    
T  4910892 ca 4910891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 72 - 179
Target Start/End: Original strand, 5724626 - 5724732
Alignment:
Q  72 ttcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggagg 171  Q
    |||||||||||||||||| ||  ||| |||||||| ||||| ||||||| |||||| ||||| |||||||| ||||||||||||||||||||| ||||||    
T  5724626 ttcatataaaagtgagttaaatgatatatttgtgtgtaaaa-atcaattatagaataaaaagttacaaatcctagcttcaagtagaatcaattttggagg 5724724  T
Q  172 caaaatca 179  Q
    ||||||||    
T  5724725 caaaatca 5724732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 78 - 164
Target Start/End: Original strand, 765390 - 765473
Alignment:
Q  78 taaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    ||||| |||||||||||||||||||    || || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  765390 taaaaatgagttgaactataaattt---ctttaataatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 765473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 67 - 177
Target Start/End: Complemental strand, 852626 - 852517
Alignment:
Q  67 atgcattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattat 166  Q
    |||||||||| |||||||||||| ||| ||| ||||| || |||||| ||||||||||||||| || |||||| |  ||||||||||| |||||||||||    
T  852626 atgcattcatgtaaaagtgagttaaacaatacatttgggtgtaaaaa-tcaattctagaatcagaacctacaatttctagcttcaagttgaatcaattat 852528  T
Q  167 ggaggcaaaat 177  Q
    |||||||||||    
T  852527 ggaggcaaaat 852517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 70 - 164
Target Start/End: Complemental strand, 3482137 - 3482044
Alignment:
Q  70 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    ||||||| ||||||| |||||||||||||| |||||| | |||| ||||||||| ||||||| |||||||||| || ||||||||| ||||||||    
T  3482137 cattcatgtaaaagtaagttgaactataaacttgtgtgtgaaaa-tcaattctaaaatcaaaggctacaaatcttaacttcaagtataatcaatt 3482044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 65 - 139
Target Start/End: Complemental strand, 17225948 - 17225875
Alignment:
Q  65 tgatgcattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaa 139  Q
    |||| ||||||| ||||| ||||||||||||||||||||| | |||||| |||||||||||||||||||||||||    
T  17225948 tgatacattcatgtaaaactgagttgaactataaatttgtatgtaaaaa-tcaattctagaatcaaaagctacaa 17225875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 7952748 - 7952809
Alignment:
Q  116 caattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaat 177  Q
    ||||||||||||||||||||||||||| | |||||||||||||| |||| ||||||||||||    
T  7952748 caattctagaatcaaaagctacaaatcctcgcttcaagtagaataaattttggaggcaaaat 7952809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 78 - 179
Target Start/End: Complemental strand, 26280688 - 26280588
Alignment:
Q  78 taaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaat 177  Q
    |||||||||||| ||||||||||||||   |||||| |||||| | ||||||||| ||||||||  ||||||||||| ||||||||| | ||||||||||    
T  26280688 taaaagtgagtttaactataaatttgtacgtaaaaa-tcaattttggaatcaaaaactacaaattctagcttcaagtggaatcaattcttgaggcaaaat 26280590  T
Q  178 ca 179  Q
    ||    
T  26280589 ca 26280588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 178
Target Start/End: Complemental strand, 30927095 - 30927027
Alignment:
Q  110 aaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaatc 178  Q
    |||||||||||||| ||||||||||||| |||| |||||||||||| |||||||| |||| ||||||||    
T  30927095 aaaaatcaattctataatcaaaagctacgaatcttagcttcaagtataatcaattctggaagcaaaatc 30927027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 78 - 177
Target Start/End: Original strand, 1485148 - 1485246
Alignment:
Q  78 taaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaat 177  Q
    |||||||||||||||| ||||||||| || | |||| ||||||||||||||||||||| ||| |  ||| ||||||||||||||||| |  |||||||||    
T  1485148 taaaagtgagttgaacaataaatttgagtgttaaaa-tcaattctagaatcaaaagctccaatttctagattcaagtagaatcaattctaaaggcaaaat 1485246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 88 - 179
Target Start/End: Original strand, 6654102 - 6654192
Alignment:
Q  88 ttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaatca 179  Q
    ||||||||||||||| ||| | |||| |||| |||||||| |||||||||||||| |||||||||||||||| |||| || ||| |||||||    
T  6654102 ttgaactataaatttctgtgtgaaaa-tcaaatctagaattaaaagctacaaatcctagcttcaagtagaattaattctgaaggaaaaatca 6654192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 81 - 164
Target Start/End: Complemental strand, 25195930 - 25195848
Alignment:
Q  81 aagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    |||||||||||||||||||||||||| || ||  |||||||||||||||||||||| ||||| ||| || || |||||||||||    
T  25195930 aagtgagttgaactataaatttgtgtgtacaat-tcaattctagaatcaaaagctataaatcctagttttaattagaatcaatt 25195848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 184
Target Start/End: Complemental strand, 16540190 - 16540085
Alignment:
Q  78 taaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaat 177  Q
    |||||||||||| |||||||||| |||   | |||  ||||||| | |||||||||||||||||| ||||||||||||||||||||| ||||| || |||    
T  16540190 taaaagtgagtttaactataaatatgtaagtgaaac-tcaattcaataatcaaaagctacaaatcctagcttcaagtagaatcaattttggagacagaat 16540092  T
Q  178 cattttt 184  Q
    || ||||    
T  16540091 caatttt 16540085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 78 - 179
Target Start/End: Original strand, 25195368 - 25195466
Alignment:
Q  78 taaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaat 177  Q
    ||||||||||||||| | ||||||||||| | |||| |||||| |||||| |||| |||||||||   |||||||||||||||||||  ||||||| |||    
T  25195368 taaaagtgagttgaattgtaaatttgtgtatgaaaa-tcaattatagaatgaaaaactacaaatcc--gcttcaagtagaatcaattccggaggcagaat 25195464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 6895984 - 6896037
Alignment:
Q  111 aaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    ||||| |||||||||||||||||||||||||| || ||||| ||||||||||||    
T  6895984 aaaataaattctagaatcaaaagctacaaatcctaacttcaggtagaatcaatt 6896037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 111 - 179
Target Start/End: Complemental strand, 2234566 - 2234498
Alignment:
Q  111 aaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaatca 179  Q
    ||||||||||||||||||||||||| ||  |  ||||||||||| ||||||||| || |||||||||||    
T  2234566 aaaatcaattctagaatcaaaagcttcagtttttagcttcaagttgaatcaattttgaaggcaaaatca 2234498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 71 - 145
Target Start/End: Complemental strand, 34911035 - 34910964
Alignment:
Q  71 attcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcata 145  Q
    |||||| ||||||| |||| |||||||| | |||||    |||||||||||||||||||||||||||||||||||    
T  34911035 attcatgtaaaagttagttaaactataattgtgtgtc---aaaatcaattctagaatcaaaagctacaaatcata 34910964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 177
Target Start/End: Complemental strand, 34620969 - 34620871
Alignment:
Q  78 taaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaat 177  Q
    |||||||||||||||  ||||||||  || |||||| ||||||||||||||| ||||||  | |  |||||||| ||||||||||||  |||||||||||    
T  34620969 taaaagtgagttgaaaaataaattttagtgtaaaaa-tcaattctagaatcagaagctatgatttctagcttcatgtagaatcaattccggaggcaaaat 34620871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 177
Target Start/End: Complemental strand, 34748406 - 34748308
Alignment:
Q  78 taaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaat 177  Q
    |||||||||||||||  ||||||||  || |||||| ||||||||||||||| ||||||  | |  |||||||| ||||||||||||  |||||||||||    
T  34748406 taaaagtgagttgaaaaataaattttagtgtaaaaa-tcaattctagaatcagaagctatgatttctagcttcatgtagaatcaattccggaggcaaaat 34748308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 947656 - 947594
Alignment:
Q  70 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagct 135  Q
    ||||||| ||||||||||||||| |||||  |||||||||| || |||||||||||||||||||||    
T  947656 cattcatgtaaaagtgagttgaattataa--ttgtgtttaagaa-tcaattctagaatcaaaagct 947594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 164
Target Start/End: Complemental strand, 994049 - 993956
Alignment:
Q  70 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    ||||||||||||||||| |||||| |||| | | ||||| ||||||||||| ||  |||||||| || |||||||| ||||||||| ||| ||||    
T  994049 cattcatataaaagtgaattgaacaataactatatgttt-aaaaatcaattatatgatcaaaagttaaaaatcataacttcaagtaaaattaatt 993956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 179
Target Start/End: Complemental strand, 8855016 - 8854903
Alignment:
Q  65 tgatgcattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    |||| |||| || ||||||| |||| ||| |||||||||| | |||||| ||||||||| | |||||| ||||||||  |||||||| |||||| |||||    
T  8855016 tgatacattaatgtaaaagtaagttcaaccataaatttgtatgtaaaaa-tcaattctatagtcaaaaactacaaattgtagcttcatgtagaaacaatt 8854918  T
Q  165 atggaggcaaaatca 179  Q
     | |||| |||||||    
T  8854917 cttgaggtaaaatca 8854903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 164
Target Start/End: Complemental strand, 8860595 - 8860502
Alignment:
Q  70 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    |||||||  ||||||||||||||| |||||||| ||| | |||| ||||||||  | | |||||||||||||||| |||||||| |||| |||||    
T  8860595 cattcatgcaaaagtgagttgaaccataaatttatgtgtcaaaa-tcaattcttaacttaaaagctacaaatcattgcttcaagcagaagcaatt 8860502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 167
Target Start/End: Original strand, 434239 - 434327
Alignment:
Q  78 taaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatg 167  Q
    ||||||||||||||| | ||||||| ||| ||||| |||||||||| ||||||||||||  |||  || |||||| || |||||||||||    
T  434239 taaaagtgagttgaaatttaaatttatgtataaaa-atcaattctaaaatcaaaagctattaattttaacttcaaatataatcaattatg 434327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 164
Target Start/End: Original strand, 3436917 - 3436969
Alignment:
Q  112 aaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    ||||||||| |||||||||||| ||||||| |||| ||||| |||||||||||    
T  3436917 aaatcaattatagaatcaaaagttacaaattatagattcaactagaatcaatt 3436969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 135
Target Start/End: Complemental strand, 9505860 - 9505797
Alignment:
Q  71 attcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagct 135  Q
    |||||| |||||||| ||||||| ||||||||| ||||||||| |||||  ||||||||||||||    
T  9505860 attcatgtaaaagtgtgttgaacaataaatttgagtttaaaaa-tcaatcatagaatcaaaagct 9505797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 154
Target Start/End: Original strand, 31305849 - 31305924
Alignment:
Q  78 taaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagt 154  Q
    |||||||||||||| | ||||||||| || || ||| ||||||||||||||||||||| ||| |  |||||||||||    
T  31305849 taaaagtgagttgatcaataaatttgagtgtataaa-tcaattctagaatcaaaagctccaatttttagcttcaagt 31305924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 135
Target Start/End: Original strand, 34027412 - 34027475
Alignment:
Q  71 attcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagct 135  Q
    |||||| ||| |||||||||||  ||||||||| || ||||| ||||||||||||||||||||||    
T  34027412 attcatgtaagagtgagttgaataataaatttgagtgtaaaa-atcaattctagaatcaaaagct 34027475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 164
Target Start/End: Complemental strand, 4908008 - 4907961
Alignment:
Q  117 aattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    |||| ||||||||||| ||||||||||||||||||| || ||||||||    
T  4908008 aattatagaatcaaaaactacaaatcatagcttcaaataaaatcaatt 4907961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 164
Target Start/End: Complemental strand, 7280581 - 7280488
Alignment:
Q  70 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    |||| |||||||||||| |||||| |||||||||||| |||||| | |||| |  ||||||||||||||| |  ||| || ||||| ||||||||    
T  7280581 catttatataaaagtgaattgaacgataaatttgtgtgtaaaaagt-aattttgaaatcaaaagctacaagttttagttttaagtaaaatcaatt 7280488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 164
Target Start/End: Complemental strand, 31725827 - 31725774
Alignment:
Q  111 aaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    |||||||||| |||||||||||  || ||||| ||| |||||||||||||||||    
T  31725827 aaaatcaattttagaatcaaaaattaaaaatcctaggttcaagtagaatcaatt 31725774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 10400726 - 10400782
Alignment:
Q  108 taaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    ||||||||||||| |||||||||| |||| ||||| || |||||| |||||| ||||    
T  10400726 taaaaaatcaattttagaatcaaaggctagaaatcctaacttcaactagaattaatt 10400782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 78 - 171
Target Start/End: Complemental strand, 42741060 - 42740968
Alignment:
Q  78 taaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggagg 171  Q
    ||||||||||||| ||  |||||||| || |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42741060 taaaagtgagttggacagtaaatttgagtgtaaaaa-tcaattctagaatcaaaagctacaaatcttagcttcaagtagaatcaattatggagg 42740968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 66 - 179
Target Start/End: Original strand, 33019146 - 33019258
Alignment:
Q  66 gatgcattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatta 165  Q
    ||||||||||| ||||||||||||||||||||||||| ||| |  ||||||||||||| || ||||||||||||||  ||||||||| || ||||||||     
T  33019146 gatgcattcatgtaaaagtgagttgaactataaatttatgtgt-gaaaatcaattctaaaaccaaaagctacaaattctagcttcaaatataatcaattc 33019244  T
Q  166 tggaggcaaaatca 179  Q
    | |||||| |||||    
T  33019245 tagaggcagaatca 33019258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 110 - 182
Target Start/End: Complemental strand, 30503261 - 30503189
Alignment:
Q  110 aaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaatcattt 182  Q
    ||||||||||||| |||||||||||||| |||| | ||||||||||||||||||| |||||||||||||||||    
T  30503261 aaaaatcaattcttgaatcaaaagctacgaatcctggcttcaagtagaatcaattttggaggcaaaatcattt 30503189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 70 - 179
Target Start/End: Complemental strand, 42982635 - 42982525
Alignment:
Q  70 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatc--aattatg 167  Q
    ||||||| ||||||||||||| |  |||||||||||| |||||| |||||||| |||||||||||||||| |  |||||||||||||||||  |||| ||    
T  42982635 cattcatgtaaaagtgagttgtaaaataaatttgtgtgtaaaaa-tcaattctggaatcaaaagctacaatttctagcttcaagtagaatcaaaattctg 42982537  T
Q  168 gaggcaaaatca 179  Q
    ||||||||||||    
T  42982536 gaggcaaaatca 42982525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 70 - 164
Target Start/End: Complemental strand, 43501214 - 43501123
Alignment:
Q  70 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    ||||||| ||||| ||||||||| ||||| ||||||||   | ||||||||||| |||||||||||||||||| ||| |||||||||||||||||    
T  43501214 cattcatgtaaaactgagttgaattataattttgtgtt---agaatcaattctaaaatcaaaagctacaaatcctagtttcaagtagaatcaatt 43501123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 70 - 179
Target Start/End: Complemental strand, 10644694 - 10644586
Alignment:
Q  70 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatgga 169  Q
    |||| |||||||||||||||||||||||||||| ||| | |||  | ||||||| ||| |||| ||||||||| || ||||||||||||| |||| ||||    
T  10644694 catttatataaaagtgagttgaactataaatttatgtatgaaagtt-aattctataatgaaaaactacaaatcttaacttcaagtagaataaattttgga 10644596  T
Q  170 ggcaaaatca 179  Q
    |||| |||||    
T  10644595 ggcagaatca 10644586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 171
Target Start/End: Original strand, 11504056 - 11504155
Alignment:
Q  70 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatgga 169  Q
    ||||||| ||||||||||||||||||||| ||||||| | ||||  |||||||| |||||||| ||||||||| || |||   |||||||||||| ||||    
T  11504056 cattcatgtaaaagtgagttgaactataactttgtgtgtgaaaa--caattctataatcaaaaactacaaatcctaactttcggtagaatcaattttgga 11504153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 176
Target Start/End: Complemental strand, 16518869 - 16518765
Alignment:
Q  70 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatgga 169  Q
    ||||||| ||||||||||||||||||||||||||||  |||||  |||  | || |||||||||||||||||| || |||| ||||||||||||| ||||    
T  16518869 cattcatgtaaaagtgagttgaactataaatttgtgcgtaaaag-tcatct-tataatcaaaagctacaaatcctatcttctagtagaatcaattctgga 16518772  T
Q  170 ggcaaaa 176  Q
     ||||||    
T  16518771 agcaaaa 16518765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 184
Target Start/End: Complemental strand, 21659771 - 21659697
Alignment:
Q  110 aaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaatcattttt 184  Q
    |||||||||||||||||||| ||||||||| |  ||||| | ||||||| |||||||||||||||||||| ||||    
T  21659771 aaaaatcaattctagaatcataagctacaatttttagctacgagtagaaacaattatggaggcaaaatcaatttt 21659697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 2002728 - 2002797
Alignment:
Q  110 aaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaatca 179  Q
    ||||||||||| |||||| |||| ||||||||| ||||||||||||||||||  | ||||||||||||||    
T  2002728 aaaaatcaattttagaatgaaaaactacaaatcctagcttcaagtagaatcaggtctggaggcaaaatca 2002797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 80 - 177
Target Start/End: Complemental strand, 31453464 - 31453368
Alignment:
Q  80 aaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaat 177  Q
    |||||||||| |||| ||||||||||  | |||| ||||||  |||||||||||  ||||||  ||||||||||||||||||||||| ||||||||||    
T  31453464 aaagtgagttaaactctaaatttgtgcgtgaaaa-tcaatttcagaatcaaaaggaacaaattttagcttcaagtagaatcaattatagaggcaaaat 31453368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 70 - 176
Target Start/End: Complemental strand, 5977273 - 5977166
Alignment:
Q  70 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatc-aaaagctacaaatcatagcttcaag-tagaatcaattatg 167  Q
    |||||||||||||||||| ||||| ||||||||| | || ||||||||| | ||||  | ||||||| |||||  |||||||||| ||||||||||||||    
T  5977273 cattcatataaaagtgaggtgaacaataaatttgaggtt-aaaaatcaaatatagaggcaaaaagctccaaattttagcttcaagttagaatcaattatg 5977175  T
Q  168 gaggcaaaa 176  Q
    |||||||||    
T  5977174 gaggcaaaa 5977166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 179
Target Start/End: Complemental strand, 11511044 - 11510936
Alignment:
Q  70 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaag-tagaatcaattatgg 168  Q
    |||||||||||||||| ||||||| ||||||||| | ||  ||||| |||| ||||  ||||| || |||||  |||||||||| ||||||||| |||||    
T  11511044 cattcatataaaagtgggttgaacaataaatttgaggtt--aaaataaattgtagaggcaaaaactccaaattctagcttcaagatagaatcaaatatgg 11510947  T
Q  169 aggcaaaatca 179  Q
    |||||||||||    
T  11510946 aggcaaaatca 11510936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 141
Target Start/End: Complemental strand, 33502320 - 33502258
Alignment:
Q  78 taaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaat 141  Q
    ||||||||||||||||||||||| ||||| | ||||||||||| |||||||||||| |||||||    
T  33502320 taaaagtgagttgaactataaatatgtgtgt-aaaaatcaattttagaatcaaaagttacaaat 33502258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 164
Target Start/End: Complemental strand, 44439337 - 44439251
Alignment:
Q  78 taaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaag-tagaatcaatt 164  Q
    |||||||||||||||| ||||||||| || | |||| |||||| |||||||||||||| |||||  |||||||||| |||||||||||    
T  44439337 taaaagtgagttgaacaataaatttgagtgttaaaa-tcaattttagaatcaaaagctccaaattttagcttcaagttagaatcaatt 44439251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 70 - 179
Target Start/End: Original strand, 1976858 - 1976967
Alignment:
Q  70 cattcatataaaagtgagttgaactataaatttgtgt-ttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatgg 168  Q
    ||||||| |||||||||||| ||| ||||||||| || | ||||||||||||||||||| | ||| ||||| || ||| ||  ||||||||||||| |||    
T  1976858 cattcatgtaaaagtgagttcaacaataaatttgagtgtaaaaaaatcaattctagaattagaagttacaattc-tagtttatagtagaatcaattttgg 1976956  T
Q  169 aggcaaaatca 179  Q
    || ||||||||    
T  1976957 agacaaaatca 1976967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 72 - 170
Target Start/End: Original strand, 8800694 - 8800790
Alignment:
Q  72 ttcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggag 170  Q
    ||||| ||||||||||||||| ||||||||||| | |  |||||||||| |||| ||||||| ||||||||||| | |||| || ||||||||||||||    
T  8800694 ttcatgtaaaagtgagttgaattataaatttgtatat-taaaatcaattatagattcaaaagttacaaatcatatc-tcaaatataatcaattatggag 8800790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 182
Target Start/End: Complemental strand, 3352159 - 3352056
Alignment:
Q  78 taaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaat 177  Q
    ||||||| |||||||  |||||||||||| | |||| |||||| |||||||||||||| ||| ||  | ||||||||| ||||||||||| || ||| ||    
T  3352159 taaaagtaagttgaaacataaatttgtgtgtgaaaa-tcaattatagaatcaaaagctgcaattcccaacttcaagtaaaatcaattatgaagacaagat 3352061  T
Q  178 cattt 182  Q
    |||||    
T  3352060 cattt 3352056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 72 - 159
Target Start/End: Original strand, 5533027 - 5533113
Alignment:
Q  72 ttcatataaaagtgagttgaactataaattt--gtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaat 159  Q
    ||||| |||| |||||||||| |||||||||  |||||||||   ||||||  |||||||||||||||||||  ||||||||||||||||    
T  5533027 ttcatgtaaatgtgagttgaattataaatttatgtgtttaaa---tcaatttaagaatcaaaagctacaaatagtagcttcaagtagaat 5533113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 164
Target Start/End: Complemental strand, 12037137 - 12037059
Alignment:
Q  85 gagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    ||||||||| |||||||||| | | |||| |||||| ||||||||||||||||||||  ||| ||||| |||||||||||    
T  12037137 gagttgaaccataaatttgtttatgaaaa-tcaattgtagaatcaaaagctacaaattttagtttcaactagaatcaatt 12037059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 179
Target Start/End: Complemental strand, 22536081 - 22535981
Alignment:
Q  78 taaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaat 177  Q
    ||||| |||||| |||||||||| |||||  ||||| | ||||||| ||||||||||| |||||  ||  ||||||||||||||||| |  |||||||||    
T  22536081 taaaaatgagtttaactataaatatgtgtgcaaaaatt-aattctaaaatcaaaagcttcaaattctaaattcaagtagaatcaattctaaaggcaaaat 22535983  T
Q  178 ca 179  Q
    ||    
T  22535982 ca 22535981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 179
Target Start/End: Original strand, 680344 - 680379
Alignment:
Q  144 tagcttcaagtagaatcaattatggaggcaaaatca 179  Q
    ||||||||||||||||||||| ||||||||||||||    
T  680344 tagcttcaagtagaatcaattctggaggcaaaatca 680379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 110 - 184
Target Start/End: Original strand, 3476462 - 3476537
Alignment:
Q  110 aaaaatcaattctagaatcaaaagctacaaatcatagcttcaagt-agaatcaattatggaggcaaaatcattttt 184  Q
    |||||| |||||||||||||||||||  || |  |||||| |||| |||||||||| |||||||||||||| ||||    
T  3476462 aaaaataaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaatttt 3476537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 72 - 159
Target Start/End: Complemental strand, 4779197 - 4779111
Alignment:
Q  72 ttcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaat 159  Q
    ||||| |||| |||| |||| | ||||||||| ||||| ||| | ||||||| ||| ||||||||||||| |||| ||||||||||||    
T  4779197 ttcatgtaaatgtgaattgagcaataaatttgagtttataaa-taaattctaaaataaaaagctacaaattatagtttcaagtagaat 4779111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 73 - 164
Target Start/End: Complemental strand, 13912875 - 13912785
Alignment:
Q  73 tcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    |||| ||||| ||||||||||  ||||||||||| |||||| | ||||||||||| ||||  |||||||  |||||||| ||||||| ||||    
T  13912875 tcatgtaaaaatgagttgaacggtaaatttgtgtgtaaaaatt-aattctagaataaaaaattacaaattctagcttcatgtagaataaatt 13912785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 78 - 141
Target Start/End: Complemental strand, 32596074 - 32596012
Alignment:
Q  78 taaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaat 141  Q
    ||||||||||||||| ||| ||||||| | |||||| |||||| |||||||||||| |||||||    
T  32596074 taaaagtgagttgaattatgaatttgtatgtaaaaa-tcaattttagaatcaaaagttacaaat 32596012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 164
Target Start/End: Original strand, 4894151 - 4894244
Alignment:
Q  70 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    ||||||| ||||||||| |||||  ||||||||| || ||| || |||||| |||||||||||||||| | |  ||| ||||||| |||||||||    
T  4894151 cattcatttaaaagtgacttgaataataaatttgagtataataa-tcaattatagaatcaaaagctacgatttctagtttcaagttgaatcaatt 4894244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 139
Target Start/End: Complemental strand, 7630245 - 7630216
Alignment:
Q  110 aaaaatcaattctagaatcaaaagctacaa 139  Q
    ||||||||||||||||||||||||||||||    
T  7630245 aaaaatcaattctagaatcaaaagctacaa 7630216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 37561742 - 37561689
Alignment:
Q  127 tcaaaagctacaaatcatagcttcaagt-agaatcaattatggaggcaaaatca 179  Q
    ||||||| |||||||| ||| ||||||| |||||||||||| ||||||||||||    
T  37561742 tcaaaaggtacaaatcgtagtttcaagttagaatcaattatagaggcaaaatca 37561689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 179
Target Start/End: Original strand, 10618975 - 10619043
Alignment:
Q  111 aaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaatca 179  Q
    |||||||||| ||||||||||||||  || |  ||||||||| ||||||||||| |  |||||||||||    
T  10618975 aaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaattctaaaggcaaaatca 10619043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 131
Target Start/End: Original strand, 11759866 - 11759913
Alignment:
Q  83 gtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaa 131  Q
    |||| ||||||||||||||||| | ||||| ||||||||||||||||||    
T  11759866 gtgatttgaactataaatttgtatgtaaaa-atcaattctagaatcaaa 11759913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 21234576 - 21234612
Alignment:
Q  128 caaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    ||||||||||||||  |||||||||||||||||||||    
T  21234576 caaaagctacaaattctagcttcaagtagaatcaatt 21234612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 179
Target Start/End: Original strand, 37420197 - 37420299
Alignment:
Q  78 taaaagtgagttgaactataaatttgtgtttaaaaaatcaattct--agaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaa 175  Q
    |||||||||||||||  ||||||||| || | |||||||||||||  ||||| | ||||||||  |  ||| ||| ||||||||||||| | ||||||||    
T  37420197 taaaagtgagttgaataataaatttgagtgt-aaaaatcaattctagagaattagaagctacattttctagattctagtagaatcaattctagaggcaaa 37420295  T
Q  176 atca 179  Q
    ||||    
T  37420296 atca 37420299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 70 - 161
Target Start/End: Complemental strand, 30557593 - 30557505
Alignment:
Q  70 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatca 161  Q
    |||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||| ||||||||| ||||||||| ||||||||    
T  30557593 cattcatataaaagtgagttgaactataaatttgtgtg---aaaatcaattctagaatcaaaaactacaaatcctagcttcaactagaatca 30557505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 78 - 160
Target Start/End: Complemental strand, 11049333 - 11049252
Alignment:
Q  78 taaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatc 160  Q
    ||||||||| ||||||||||||||||||| |||||| |||||| ||||||||||||||||||||| |||||||||||||||||    
T  11049333 taaaagtgacttgaactataaatttgtgtgtaaaaa-tcaattttagaatcaaaagctacaaatcctagcttcaagtagaatc 11049252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 70 - 184
Target Start/End: Complemental strand, 1514434 - 1514321
Alignment:
Q  70 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatgga 169  Q
    ||||||| ||||| |||||||||| |||||||||||| |||||| |||||| || ||| |||||||||||||| |||||||||||||||| |||| ||||    
T  1514434 cattcatgtaaaaatgagttgaacaataaatttgtgtgtaaaaa-tcaattatataataaaaagctacaaatcctagcttcaagtagaataaattttgga 1514336  T
Q  170 ggcaaaatcattttt 184  Q
    | || ||||| ||||    
T  1514335 gacagaatcagtttt 1514321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 78 - 164
Target Start/End: Original strand, 7790644 - 7790729
Alignment:
Q  78 taaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    |||||||||||||||| |||||||||||| ||||| ||||||| ||||||| ||| |||||||||||| ||||||||||||||||||    
T  7790644 taaaagtgagttgaacaataaatttgtgtgtaaaa-atcaattatagaatctaaatctacaaatcataacttcaagtagaatcaatt 7790729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 7524196 - 7524120
Alignment:
Q  78 taaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagta 155  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||| || |||||||||    
T  7524196 taaaagtgagttgaactataaatttgtgtgtaaaaa-tcaattctataatcaaaagctacaaatcctaacttcaagta 7524120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 71 - 179
Target Start/End: Original strand, 28083883 - 28083990
Alignment:
Q  71 attcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggag 170  Q
    |||||| |||||||||| ||||||  |||||||||| |||||| | |||| ||||||||||||||||||||  |||||||||||||||||||||| | ||    
T  28083883 attcatgtaaaagtgagctgaacttgaaatttgtgtgtaaaaatt-aattatagaatcaaaagctacaaattctagcttcaagtagaatcaattacgaag 28083981  T
Q  171 gcaaaatca 179  Q
     ||||||||    
T  28083982 acaaaatca 28083990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 65 - 175
Target Start/End: Original strand, 48549003 - 48549110
Alignment:
Q  65 tgatgcattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    |||| |||| || |||||||||||||||| ||||||  | |||||||| |||||||||||||||| ||||||||| |  |||||||||||||||||||||    
T  48549003 tgatacatttatgtaaaagtgagttgaacaataaat--gagtttaaaa-atcaattctagaatcagaagctacaatttctagcttcaagtagaatcaatt 48549099  T
Q  165 atggaggcaaa 175  Q
     ||||||||||    
T  48549100 ttggaggcaaa 48549110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 78 - 179
Target Start/End: Complemental strand, 6021887 - 6021787
Alignment:
Q  78 taaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaat 177  Q
    |||||||||||||||| ||||| ||| || |||||| || ||| ||||||||||||||||| ||| ||||||||||||||||| ||| | ||||||||||    
T  6021887 taaaagtgagttgaaccataaacttgagtgtaaaaa-tctattatagaatcaaaagctacatatcctagcttcaagtagaatcgattctagaggcaaaat 6021789  T
Q  178 ca 179  Q
    ||    
T  6021788 ca 6021787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 70 - 166
Target Start/End: Complemental strand, 3016253 - 3016158
Alignment:
Q  70 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattat 166  Q
    ||||||| ||||||||||||||||  ||||||| ||| |||| | |||||||||||||||||||||||||||  ||  |||||||||||||||||||    
T  3016253 cattcatgtaaaagtgagttgaaccgtaaatttatgtgtaaaca-tcaattctagaatcaaaagctacaaattctaagttcaagtagaatcaattat 3016158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 70 - 161
Target Start/End: Original strand, 30850393 - 30850483
Alignment:
Q  70 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatca 161  Q
    ||||||| ||||||||||||||||||||||||||| | |  ||||||||||||| ||| |||| ||||||||| ||| ||||||||||||||    
T  30850393 cattcatgtaaaagtgagttgaactataaatttgtatgt-taaaatcaattctaaaattaaaaactacaaatcctagtttcaagtagaatca 30850483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 78 - 173
Target Start/End: Original strand, 38797631 - 38797725
Alignment:
Q  78 taaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggca 173  Q
    ||||||||||||||||||||||||||||| | |||| |||||||| || | | ||| ||||||||||| ||||||||| ||||||||| |||||||    
T  38797631 taaaagtgagttgaactataaatttgtgtgtgaaaa-tcaattcttgatttagaagttacaaatcataacttcaagtataatcaattaaggaggca 38797725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 66 - 139
Target Start/End: Original strand, 213527 - 213599
Alignment:
Q  66 gatgcattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaa 139  Q
    ||||||||||| |||||||||||||||| | ||||||| |||| ||||||||||||||||||||||||| ||||    
T  213527 gatgcattcatgtaaaagtgagttgaacaacaaatttgagttt-aaaaatcaattctagaatcaaaagccacaa 213599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 71 - 179
Target Start/End: Original strand, 47321902 - 47322008
Alignment:
Q  71 attcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggag 170  Q
    |||||| ||||||||| ||||||||||||||||||| |  ||||||||||||||||| |||| || |||||  |||||||||||| |||||||||| ||     
T  47321902 attcatgtaaaagtgaattgaactataaatttgtgtat-gaaaatcaattctagaattaaaa-ctgcaaattctagcttcaagtataatcaattatagaa 47321999  T
Q  171 gcaaaatca 179  Q
    ||| |||||    
T  47322000 gcagaatca 47322008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 164
Target Start/End: Complemental strand, 3416167 - 3416078
Alignment:
Q  74 catataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    ||||||||| |||||| |||||||||||||||| | |||||||||||||| ||| |||| ||||||||| || ||| ||||| ||||||||    
T  3416167 catataaaattgagttaaactataaatttgtgtgt-aaaaatcaattctaaaataaaaaactacaaatcttaactttaagtataatcaatt 3416078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 164
Target Start/End: Original strand, 28287338 - 28287423
Alignment:
Q  78 taaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    ||||||| |||||||| ||||||||| || | |||| ||||||||| |||||||||||||||||| | ||||||||||||| |||||    
T  28287338 taaaagttagttgaacaataaatttgagtgttaaaa-tcaattctaaaatcaaaagctacaaatccttgcttcaagtagaaccaatt 28287423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 70 - 159
Target Start/End: Complemental strand, 34915157 - 34915069
Alignment:
Q  70 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaat 159  Q
    ||||||| ||||||||||||||| |||||| | |||| | | || ||||||||||||||||||||||||||  |||||||||| ||||||    
T  34915157 cattcatgtaaaagtgagttgaattataaaatggtgtgttagaa-tcaattctagaatcaaaagctacaaagaatagcttcaactagaat 34915069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 31362238 - 31362303
Alignment:
Q  110 aaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaatca 179  Q
    ||||||||||||||||||||||||||||||||  || ||||    |||||||||||||||||||||||||    
T  31362238 aaaaatcaattctagaatcaaaagctacaaattctaacttc----agaatcaattatggaggcaaaatca 31362303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 51500867 - 51500915
Alignment:
Q  110 aaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaa 158  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  51500867 aaaaatcaattctagaatcaaaagctacaaatcctaggttcaagtagaa 51500915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 177
Target Start/End: Original strand, 10324940 - 10325038
Alignment:
Q  78 taaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaat 177  Q
    |||||||||||  ||| ||||||||| || ||||| ||||||| |||||||||||||||||| |  || ||||||||||| |||||| | ||||||||||    
T  10324940 taaaagtgagtataacaataaatttgagtgtaaaa-atcaattatagaatcaaaagctacaatttctatcttcaagtagactcaattctagaggcaaaat 10325038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 164
Target Start/End: Complemental strand, 47554033 - 47553935
Alignment:
Q  66 gatgcattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaat-caaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    ||||||||| ||||||| ||||||||||||||||| | | | |||||| | |||||||||||  |||| ||||||| ||||||||||| |||||||||||    
T  47554033 gatgcattcttataaaaatgagttgaactataaatgtatatgtaaaaact-aattctagaataaaaaaactacaaagcatagcttcaaatagaatcaatt 47553935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 70 - 139
Target Start/End: Original strand, 26373538 - 26373603
Alignment:
Q  70 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaa 139  Q
    ||||||| |||||||||| |||| | |||||||||||    |||||||||||||||||||||||||||||    
T  26373538 cattcatgtaaaagtgagatgaattttaaatttgtgt----aaaatcaattctagaatcaaaagctacaa 26373603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 164
Target Start/End: Original strand, 11817319 - 11817403
Alignment:
Q  78 taaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    ||||||| ||||||||||||||||||||  ||||||||||||| || ||||||  ||| |||||| | |||| ||||||| ||||||    
T  11817319 taaaagttagttgaactataaatttgtg--taaaaaatcaattttaaaatcaatggctgcaaatctttgctttaagtagattcaatt 11817403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 160
Target Start/End: Complemental strand, 3515870 - 3515820
Alignment:
Q  110 aaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatc 160  Q
    |||||||||||||||||| ||||||||||| |  |||||||||||||||||    
T  3515870 aaaaatcaattctagaatgaaaagctacaatttctagcttcaagtagaatc 3515820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 156
Target Start/End: Complemental strand, 27849191 - 27849145
Alignment:
Q  110 aaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtag 156  Q
    ||||||||||||||| ||||||||||||| ||| |||||||||||||    
T  27849191 aaaaatcaattctagtatcaaaagctacacatcgtagcttcaagtag 27849145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 164
Target Start/End: Complemental strand, 30996117 - 30996040
Alignment:
Q  86 agttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    ||||||||||||||| ||||  |||||| | ||||||| ||| |||| |||| ||||||| ||||||||||||||||||    
T  30996117 agttgaactataaatgtgtgggtaaaaact-aattctataataaaaaactactaatcataacttcaagtagaatcaatt 30996040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 170
Target Start/End: Original strand, 2099681 - 2099781
Alignment:
Q  70 cattcatataaaag-tgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatgg 168  Q
    |||||||||||||  |||||||| |||||||||| ||| | |||| ||||||||| || ||||| |||||||||  |||||||| || |||||||| |||    
T  2099681 cattcatataaaaaatgagttgagctataaatttatgtgtgaaaa-tcaattctataaccaaaatctacaaatctcagcttcaattacaatcaattctgg 2099779  T
Q  169 ag 170  Q
    ||    
T  2099780 ag 2099781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 164
Target Start/End: Complemental strand, 8382052 - 8381964
Alignment:
Q  75 atataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    ||||||||||||||||||| ||||| |||  | |||||| ||||||||||||  | | ||||||| |  |||||||||||||||||||||    
T  8382052 atataaaagtgagttgaacaataaacttgaatgtaaaaa-tcaattctagaactagaggctacaatttctagcttcaagtagaatcaatt 8381964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 111 - 179
Target Start/End: Original strand, 30220243 - 30220312
Alignment:
Q  111 aaaatcaattctagaatcaaa-agctacaaatcatagcttcaagtagaatcaattatggaggcaaaatca 179  Q
    |||||||||| ||||| |||| | |||||||| ||||||||||||||||||||||||  | |||||||||    
T  30220243 aaaatcaattgtagaagcaaagaactacaaattatagcttcaagtagaatcaattatacaagcaaaatca 30220312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 93 - 182
Target Start/End: Original strand, 34387710 - 34387798
Alignment:
Q  93 ctataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaatcattt 182  Q
    |||||||||||||| | |||| |||||| |||||||||||||| ||| ||  | ||||||||| ||||||||||| || ||| |||||||    
T  34387710 ctataaatttgtgtgtgaaaa-tcaattatagaatcaaaagctgcaattcccaacttcaagtaaaatcaattatgaagacaagatcattt 34387798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 158
Target Start/End: Original strand, 32370025 - 32370112
Alignment:
Q  70 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaa 158  Q
    ||||||| ||||||  |||| || ||||||||||||| |||||||| ||||||||||| ||||  |||||||  || ||||||||||||    
T  32370025 cattcatgtaaaagcaagttcaattataaatttgtgtgtaaaaaat-aattctagaataaaaaattacaaattctaacttcaagtagaa 32370112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 164
Target Start/End: Complemental strand, 50571357 - 50571282
Alignment:
Q  88 ttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    ||||||||||| ||||||| | || | ||| ||||||||| |||| ||||||||| || ||||||||||||||||||    
T  50571357 ttgaactataactttgtgtctgaaca-tcagttctagaataaaaaactacaaatcctaacttcaagtagaatcaatt 50571282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 86 - 159
Target Start/End: Original strand, 40662991 - 40663061
Alignment:
Q  86 agttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaat 159  Q
    ||||||| ||||||||||||| |    |||||||||| ||||||||||||||||||  |||||| |||||||||    
T  40662991 agttgaattataaatttgtgtgt---taatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 40663061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 161
Target Start/End: Original strand, 47892422 - 47892472
Alignment:
Q  111 aaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatca 161  Q
    ||||||||||||||||||||||||| ||| |  |||||| |||||||||||    
T  47892422 aaaatcaattctagaatcaaaagcttcaatttctagctttaagtagaatca 47892472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 177
Target Start/End: Original strand, 15986237 - 15986321
Alignment:
Q  92 actataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaat 177  Q
    ||||||||||||||| | || | ||||||||||||| |||| ||  ||||| ||| ||||| || |||||||| ||||||||||||    
T  15986237 actataaatttgtgtgtgaata-tcaattctagaataaaaaacttgaaatcctagtttcaactataatcaattctggaggcaaaat 15986321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 162
Target Start/End: Complemental strand, 33693073 - 33693020
Alignment:
Q  110 aaaaatcaattctagaatcaaaagctacaaatcatagcttcaag-tagaatcaa 162  Q
    ||||||||||| |||||||||||||||||| |  |||||||||| |||||||||    
T  33693073 aaaaatcaattatagaatcaaaagctacaatttctagcttcaagttagaatcaa 33693020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 36780150 - 36780199
Alignment:
Q  111 aaaatcaattctagaatcaaaagctac-aaatcatagcttcaagtagaat 159  Q
    ||||||||||||| ||||||||||||| ||||| || |||||||||||||    
T  36780150 aaaatcaattctataatcaaaagctacaaaatcctaacttcaagtagaat 36780199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 155
Target Start/End: Complemental strand, 44801675 - 44801592
Alignment:
Q  71 attcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagta 155  Q
    |||||| ||||||||||||||  |||||||||| |  | |||||| |||| |||||| |||| ||||||||| || |||||||||    
T  44801675 attcatgtaaaagtgagttgagatataaatttgcgcgt-aaaaattaattttagaataaaaaactacaaatcctaacttcaagta 44801592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 71 - 164
Target Start/End: Original strand, 220597 - 220691
Alignment:
Q  71 attcatataaaagtgagttgaactataaatttgtgttta-aaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    |||||||||||||||| ||||||||||||||| ||| |  ||||||||||||||||||||||| || |||| |||||||||||||||||||||||    
T  220597 attcatataaaagtgaattgaactataaatttttgtatctaaaaatcaattctagaatcaaaaactgcaaaacatagcttcaagtagaatcaatt 220691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 70 - 179
Target Start/End: Complemental strand, 40491669 - 40491561
Alignment:
Q  70 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatgga 169  Q
    ||||||| |||||||||||| |||| ||||||||||| |||||  |||||||||||||||||||||||||| | || ||||||||||| |||||| || |    
T  40491669 cattcatgtaaaagtgagttaaactttaaatttgtgtgtaaaag-tcaattctagaatcaaaagctacaaaacttaacttcaagtagagtcaattctgaa 40491571  T
Q  170 ggcaaaatca 179  Q
    ||||||||||    
T  40491570 ggcaaaatca 40491561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 79 - 164
Target Start/End: Original strand, 41386818 - 41386902
Alignment:
Q  79 aaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    |||||||||||||| ||||||||||||| |||| | ||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  41386818 aaaagtgagttgaattataaatttgtgtgtaaata-tcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 41386902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 70 - 164
Target Start/End: Original strand, 38123660 - 38123753
Alignment:
Q  70 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    ||||||| |||||||||||||| | ||||||||| || ||||| |||||||||||||| | ||||||||| |  |||||||||||||||||||||    
T  38123660 cattcatgtaaaagtgagttgaccaataaatttgagtgtaaaa-atcaattctagaattagaagctacaatttctagcttcaagtagaatcaatt 38123753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 17111896 - 17111855
Alignment:
Q  123 agaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  17111896 agaatcaaaagctacaaatcatagcttcaagtagaatcaatt 17111855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 110 - 171
Target Start/End: Original strand, 30182329 - 30182390
Alignment:
Q  110 aaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggagg 171  Q
    |||||| ||||||||||||||||||||||| |  ||||||||||||||||||||| ||||||    
T  30182329 aaaaattaattctagaatcaaaagctacaatttttagcttcaagtagaatcaattttggagg 30182390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 184
Target Start/End: Original strand, 15903527 - 15903637
Alignment:
Q  71 attcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggag 170  Q
    ||||||| |||||||| |||||||| ||| ||||||    ||||||||||  ||  ||||||||||||||||  | ||||||||| |||||||| |||||    
T  15903527 attcatagaaaagtgatttgaactagaaacttgtgtg---aaaatcaattgaagcttcaaaagctacaaatcccaacttcaagtataatcaattttggag 15903623  T
Q  171 gcaaaatcattttt 184  Q
    ||||||||| ||||    
T  15903624 gcaaaatcaatttt 15903637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 70 - 164
Target Start/End: Complemental strand, 45557456 - 45557363
Alignment:
Q  70 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    ||||||| |||||||||||||| ||| |||||||||| | |||||||||| ||||||| |||||||||| ||  ||||||| || | ||||||||    
T  45557456 cattcatgtaaaagtgagttgagctacaaatttgtgtgt-aaaaatcaatcctagaattaaaagctacagattctagcttctagcaaaatcaatt 45557363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 45997764 - 45997706
Alignment:
Q  85 gagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatca 143  Q
    |||||||||||||||||||||||  |||||| |||| ||||||||||||||| ||||||    
T  45997764 gagttgaactataaatttgtgttgtaaaaataaattatagaatcaaaagctataaatca 45997706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 164
Target Start/End: Complemental strand, 22195915 - 22195862
Alignment:
Q  111 aaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    |||||||||| |||||||||||| ||||||||||||||| ||||| ||||||||    
T  22195915 aaaatcaattttagaatcaaaagttacaaatcatagcttaaagtaaaatcaatt 22195862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 111 - 179
Target Start/End: Complemental strand, 27571913 - 27571845
Alignment:
Q  111 aaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaatca 179  Q
    ||||||||||||||||||||||||| ||| |  || |||||||||||||||||| | |||| |||||||    
T  27571913 aaaatcaattctagaatcaaaagctccaatttctaacttcaagtagaatcaattcttgaggtaaaatca 27571845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 28725088 - 28725147
Alignment:
Q  113 aatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggc 172  Q
    |||||||| ||||||||||||||||||||  |||||||||||| |||||||  |||||||    
T  28725088 aatcaattatagaatcaaaagctacaaattctagcttcaagtataatcaatattggaggc 28725147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 177
Target Start/End: Original strand, 5489880 - 5489946
Alignment:
Q  111 aaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaat 177  Q
    |||||||||| || ||||||||||| ||| |  |||| |||||||||||||||| ||||||||||||    
T  5489880 aaaatcaattatataatcaaaagctccaatttctagcatcaagtagaatcaattttggaggcaaaat 5489946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 166
Target Start/End: Complemental strand, 24109548 - 24109455
Alignment:
Q  72 ttcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattat 166  Q
    ||||| |||||||||| || |||||| |||||||| | |||| ||| || |  || ||||| |||||||||||||||||||| ||||||||||||    
T  24109548 ttcatgtaaaagtgagctggactatagatttgtgtgtgaaaa-tcatttttgtaaccaaaatctacaaatcatagcttcaagcagaatcaattat 24109455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 111 - 179
Target Start/End: Original strand, 44856843 - 44856909
Alignment:
Q  111 aaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaatca 179  Q
    ||||||||||||||||||||| | || ||||||||  ||||||||| ||||||| |||||| |||||||    
T  44856843 aaaatcaattctagaatcaaatgttataaatcata--ttcaagtagtatcaattttggagggaaaatca 44856909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 177
Target Start/End: Complemental strand, 1411041 - 1410947
Alignment:
Q  82 agtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaat 177  Q
    ||||||||||| | |||||||| || | |||| ||||||||| || ||||| |||||||| ||| |||||| ||||||||||| |  |||||||||    
T  1411041 agtgagttgaattgtaaatttgcgtgtgaaaa-tcaattctaaaaacaaaatctacaaattataacttcaaatagaatcaattctaaaggcaaaat 1410947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 70 - 137
Target Start/End: Complemental strand, 25156291 - 25156225
Alignment:
Q  70 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctac 137  Q
    ||||||||||||||||||||||  ||| ||||| ||| | |||||||||||||||||| |||| ||||    
T  25156291 cattcatataaaagtgagttgatttattaatttatgtgt-aaaaatcaattctagaataaaaaactac 25156225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 164
Target Start/End: Original strand, 26984533 - 26984567
Alignment:
Q  130 aaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    ||||||||||||| |||||||||||||||||||||    
T  26984533 aaagctacaaatcttagcttcaagtagaatcaatt 26984567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 179
Target Start/End: Complemental strand, 45005068 - 45005003
Alignment:
Q  114 atcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaatca 179  Q
    |||||||||| |||||||  || ||| |  ||||||||||||||||||||| || |||||||||||    
T  45005068 atcaattctataatcaaagcctccaatttttagcttcaagtagaatcaattctgaaggcaaaatca 45005003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 35105192 - 35105156
Alignment:
Q  128 caaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  35105192 caaaaactacaaattatagcttcaagtagaatcaatt 35105156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 142
Target Start/End: Original strand, 42816462 - 42816533
Alignment:
Q  70 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatc 142  Q
    ||||||| || |||||| ||||| ||||||||||||| |  ||||||||||||||||| ||||| || |||||    
T  42816462 cattcatgtagaagtgaattgaattataaatttgtgtgt-gaaaatcaattctagaattaaaagttataaatc 42816533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 152
Target Start/End: Original strand, 45821725 - 45821753
Alignment:
Q  124 gaatcaaaagctacaaatcatagcttcaa 152  Q
    |||||||||||||||||||||||||||||    
T  45821725 gaatcaaaagctacaaatcatagcttcaa 45821753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 78 - 164
Target Start/End: Complemental strand, 52364134 - 52364049
Alignment:
Q  78 taaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    ||||||||||||||||| ||||||| ||||| |||| |||||| ||||||||||||||| ||||||||||||||||||||| |||||    
T  52364134 taaaagtgagttgaactgtaaatttatgtttgaaaa-tcaattatagaatcaaaagctataaatcatagcttcaagtagaaacaatt 52364049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 72 - 178
Target Start/End: Original strand, 32523336 - 32523442
Alignment:
Q  72 ttcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagctt-caagtagaatcaattatggag 170  Q
    ||||| || ||||||||| |||| ||||||||||| ||||| ||||||| ||||||||||||||||||||| || ||| |||||||||  ||||||||||    
T  32523336 ttcatgtataagtgagttaaactctaaatttgtgtgtaaaa-atcaattttagaatcaaaagctacaaatcctaacttccaagtagaaataattatggag 32523434  T
Q  171 gcaaaatc 178  Q
    ||||||||    
T  32523435 gcaaaatc 32523442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 70 - 155
Target Start/End: Original strand, 31708233 - 31708317
Alignment:
Q  70 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagta 155  Q
    ||||||| ||||||||||||||| ||||||||||||| | | || |||||||||||||||||||||||||||  ||||||| ||||    
T  31708233 cattcatgtaaaagtgagttgaattataaatttgtgtgttagaa-tcaattctagaatcaaaagctacaaatagtagcttcgagta 31708317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 164
Target Start/End: Complemental strand, 4526215 - 4526130
Alignment:
Q  78 taaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    |||||||| |||||||||||||||||||| | ||||||||||| || ||||||||| ||||||| |||| | ||| |||||||||||    
T  4526215 taaaagtgtgttgaactataaatttgtgtgt-aaaaatcaattttaaaatcaaaagttacaaattataggtacaaatagaatcaatt 4526130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 70 - 179
Target Start/End: Original strand, 25359568 - 25359676
Alignment:
Q  70 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatgga 169  Q
    |||||||||| |||||| || ||| |||||| ||||| | |||| |||||| |||||| |||| ||||||||  || |||||||||||||||||| ||||    
T  25359568 cattcatatagaagtgattttaacaataaatatgtgtgtgaaaa-tcaattatagaataaaaaactacaaattctaacttcaagtagaatcaattctgga 25359666  T
Q  170 ggcaaaatca 179  Q
    |||| |||||    
T  25359667 ggcagaatca 25359676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 75 - 179
Target Start/End: Complemental strand, 35058448 - 35058344
Alignment:
Q  75 atataaaagtgagttgaactataa-atttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggca 173  Q
    ||||||||||||||||||| |||| ||||| || | |||| |||||||||||||||||||||  || |  ||||| ||||||||||||||| | ||||||    
T  35058448 atataaaagtgagttgaacaataatatttgagtgttaaaa-tcaattctagaatcaaaagctcgaatttctagctccaagtagaatcaattcttgaggca 35058350  T
Q  174 aaatca 179  Q
    ||||||    
T  35058349 aaatca 35058344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 35058118 - 35058063
Alignment:
Q  111 aaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattat 166  Q
    ||||||||||||| ||| |||||||||||||| |||||||| ||||||||||||||    
T  35058118 aaaatcaattctataattaaaagctacaaatcctagcttcatgtagaatcaattat 35058063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 149
Target Start/End: Original strand, 52141242 - 52141320
Alignment:
Q  70 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagctt 149  Q
    ||||||||||||||||||||||||||||| | ||||| |  ||||| |||||||||||| || |||||||||| ||||||    
T  52141242 cattcatataaaagtgagttgaactataattatgtgtgt-gaaaattaattctagaatcgaatgctacaaatcctagctt 52141320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 70 - 184
Target Start/End: Original strand, 37335028 - 37335141
Alignment:
Q  70 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatgga 169  Q
    ||||||||||||| |||||||||| || ||||   || | |||||||||||||||||||||||||||| | |  || |||| |||| |||||||| | ||    
T  37335028 cattcatataaaaatgagttgaacaatgaattcaagtgt-aaaaatcaattctagaatcaaaagctacgatttctaacttctagtaaaatcaattctcga 37335126  T
Q  170 ggcaaaatcattttt 184  Q
    |||||||||| ||||    
T  37335127 ggcaaaatcaatttt 37335141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 75 - 184
Target Start/End: Original strand, 40736537 - 40736644
Alignment:
Q  75 atataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaa 174  Q
    |||||||| | | ||||| ||||||||||||| | |||| | |  ||||||||||||||| |||||| |||| |||||||||||||||||  ||| ||||    
T  40736537 atataaaaattaattgaattataaatttgtgtgtgaaaattaa--tctagaatcaaaagcgacaaattatagtttcaagtagaatcaatttcggatgcaa 40736634  T
Q  175 aatcattttt 184  Q
    ||||| ||||    
T  40736635 aatcaatttt 40736644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 159
Target Start/End: Complemental strand, 31013113 - 31013021
Alignment:
Q  66 gatgcattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaat 159  Q
    ||||||||||| || |||||||||||| | ||||||||||| | | || ||||||||||| ||||| |||||||||  ||| ||||||||||||    
T  31013113 gatgcattcatgtacaagtgagttgaattctaaatttgtgtgttagaa-tcaattctagattcaaaggctacaaatagtaggttcaagtagaat 31013021  T

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Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 177
Target Start/End: Original strand, 40147885 - 40147950
Alignment:
Q  112 aaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaat 177  Q
    |||||||||||||||||||||||| |||||  |||||| |||||||||||||| || || ||||||    
T  40147885 aaatcaattctagaatcaaaagctccaaattctagcttgaagtagaatcaattctgaagacaaaat 40147950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 7717367 - 7717423
Alignment:
Q  123 agaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaatca 179  Q
    ||||||| ||||||||| |  ||||||||||||||||||||| ||||||||||||||    
T  7717367 agaatcagaagctacaatttctagcttcaagtagaatcaattctggaggcaaaatca 7717423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 179
Target Start/End: Original strand, 1441424 - 1441483
Alignment:
Q  120 tctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaatca 179  Q
    ||||||||||||||||||||||| ||| |||||||||| || ||||| ||| ||||||||    
T  1441424 tctagaatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatca 1441483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 145
Target Start/End: Original strand, 46853536 - 46853602
Alignment:
Q  78 taaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcata 145  Q
    |||||||||||||||| ||||||||| || | |||| ||||||||||||||||||||| | |||||||    
T  46853536 taaaagtgagttgaacaataaatttgagtgttaaaa-tcaattctagaatcaaaagctccgaatcata 46853602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 176
Target Start/End: Complemental strand, 44771746 - 44771680
Alignment:
Q  110 aaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaa 176  Q
    ||||||||||| ||||||||||||||||||||  ||| || | ||||||||||||  ||||||||||    
T  44771746 aaaaatcaattttagaatcaaaagctacaaattctagatttaggtagaatcaattccggaggcaaaa 44771680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 42375577 - 42375528
Alignment:
Q  110 aaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaat 159  Q
    ||||||||||||||  |||||| ||||||||| |||||||||||||||||    
T  42375577 aaaaatcaattctatgatcaaacgctacaaattatagcttcaagtagaat 42375528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 42404291 - 42404242
Alignment:
Q  110 aaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaat 159  Q
    ||||||||||||||  |||||| ||||||||| |||||||||||||||||    
T  42404291 aaaaatcaattctatgatcaaacgctacaaattatagcttcaagtagaat 42404242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 159
Target Start/End: Complemental strand, 31492839 - 31492770
Alignment:
Q  88 ttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaat 159  Q
    ||||| ||||||||||||| | |||  |||||||||||||||||||||||||||  | ||||||| ||||||    
T  31492839 ttgaattataaatttgtgtgttaaa--tcaattctagaatcaaaagctacaaatagttgcttcaaatagaat 31492770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 179
Target Start/End: Original strand, 44958640 - 44958708
Alignment:
Q  111 aaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaatca 179  Q
    ||||||| ||||||||||||||||| ||| |  |||| || ||||||||||| | ||||||||||||||    
T  44958640 aaaatcatttctagaatcaaaagctccaatttctagcatcgagtagaatcaactctggaggcaaaatca 44958708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 70 - 179
Target Start/End: Complemental strand, 5406995 - 5406889
Alignment:
Q  70 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatgga 169  Q
    ||||||| ||||||||| |||||   ||||||||| |   |||||||||||||| ||||| ||||||| | |  ||||||| ||||||||| ||| | ||    
T  5406995 cattcatgtaaaagtgatttgaagagtaaatttgttt---aaaaatcaattctataatcagaagctaccatttctagcttcgagtagaatccattctaga 5406899  T
Q  170 ggcaaaatca 179  Q
    ||||||||||    
T  5406898 ggcaaaatca 5406889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 72 - 159
Target Start/End: Original strand, 27266790 - 27266876
Alignment:
Q  72 ttcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaat 159  Q
    ||||| ||||||| |||||||| ||||||||| || |||||| | |||||| ||||||  |||||||| |  ||||||||||||||||    
T  27266790 ttcatgtaaaagttagttgaacaataaatttgagtgtaaaaatt-aattcttgaatcattagctacaatttctagcttcaagtagaat 27266876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 75 - 179
Target Start/End: Complemental strand, 44463662 - 44463557
Alignment:
Q  75 atataaaagtgagttgaactataaatttgtgtttaaaaaa--tcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggc 172  Q
    |||| |||||||||||| ||||| | |||||| |||||||  | |||| || ||||||||| ||||| ||  | ||||||||||||| ||||||| ||||    
T  44463662 atatgaaagtgagttgagctatatagttgtgtgtaaaaaaaattaattttaaaatcaaaagttacaa-tctcaacttcaagtagaattaattatgaaggc 44463564  T
Q  173 aaaatca 179  Q
    |||||||    
T  44463563 aaaatca 44463557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 164
Target Start/End: Complemental strand, 32112046 - 32111992
Alignment:
Q  111 aaaatcaattctagaatc-aaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    ||||||||||||| || | |||||||||||||  |||||||||||||||||||||    
T  32112046 aaaatcaattctaaaagccaaaagctacaaattgtagcttcaagtagaatcaatt 32111992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 179
Target Start/End: Original strand, 35264405 - 35264513
Alignment:
Q  70 cattcatataaaagtgagttgaactataaattt--gtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatg 167  Q
    ||||||| ||||| ||| |||||| ||||||||  |||||   |||||||||||||||||||||||||  || |  ||| ||||||||||||||  | ||    
T  35264405 cattcatgtaaaaatgacttgaacaataaatttaagtgtt---aaaatcaattctagaatcaaaagctctaatttctagtttcaagtagaatcatatttg 35264501  T
Q  168 gaggcaaaatca 179  Q
    |||||| |||||    
T  35264502 gaggcagaatca 35264513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 164
Target Start/End: Complemental strand, 40339278 - 40339224
Alignment:
Q  111 aaaatcaattctagaatcaaaa-gctacaaatcatagcttcaagtagaatcaatt 164  Q
    |||||||||| ||||| ||||| |||||||||  |||||||||||||||||||||    
T  40339278 aaaatcaattgtagaagcaaaaagctacaaattgtagcttcaagtagaatcaatt 40339224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 41115395 - 41115449
Alignment:
Q  111 aaaatcaattctagaatc-aaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    |||||||||| ||||| | |||||||||||||  |||||||||||||||||||||    
T  41115395 aaaatcaattgtagaagccaaaagctacaaattctagcttcaagtagaatcaatt 41115449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 139
Target Start/End: Original strand, 41596143 - 41596211
Alignment:
Q  70 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaa 139  Q
    |||||||  ||||||||||  ||||||||| |||||| ||||| |||||||||  |||||||||||||||    
T  41596143 cattcatggaaaagtgagtcaaactataaacttgtgtgtaaaa-atcaattctttaatcaaaagctacaa 41596211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 166
Target Start/End: Complemental strand, 3776574 - 3776518
Alignment:
Q  110 aaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattat 166  Q
    |||||| ||||||||||||| ||||||||| |  ||| ||||||||||||| |||||    
T  3776574 aaaaattaattctagaatcagaagctacaatttctagattcaagtagaatctattat 3776518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 135
Target Start/End: Original strand, 3845132 - 3845172
Alignment:
Q  95 ataaatttgtgtttaaaaaatcaattctagaatcaaaagct 135  Q
    ||||||||  || ||||||||||||||||||||||||||||    
T  3845132 ataaattttagtgtaaaaaatcaattctagaatcaaaagct 3845172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 137
Target Start/End: Original strand, 35253464 - 35253527
Alignment:
Q  73 tcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctac 137  Q
    |||| |||||||||||||||  ||||||||| || | ||||||||||||||||| || |||||||    
T  35253464 tcatgtaaaagtgagttgaatgataaatttgagtgt-aaaaatcaattctagaaccagaagctac 35253527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 169
Target Start/End: Complemental strand, 42913150 - 42913047
Alignment:
Q  65 tgatgcattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    |||| ||||| | ||||| | ||||||| |||||| |||| | |||| | ||||||||||||| ||||  || |||| ||| ||||||||| ||||||||    
T  42913150 tgatacattcttgtaaaaataagttgaaatataaaattgtttgtaaaga-tcaattctagaataaaaaattataaattataacttcaagtataatcaatt 42913052  T
Q  165 atgga 169  Q
    |||||    
T  42913051 atgga 42913047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 102
Target Start/End: Original strand, 46551262 - 46551294
Alignment:
Q  70 cattcatataaaagtgagttgaactataaattt 102  Q
    |||||||||||||||||||||| ||||||||||    
T  46551262 cattcatataaaagtgagttgagctataaattt 46551294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 111 - 184
Target Start/End: Complemental strand, 31877 - 31804
Alignment:
Q  111 aaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaatcattttt 184  Q
    ||||||||||| | |||||||||||||||||| |||||||||||| |||||||| |||||||| ||||| ||||    
T  31877 aaaatcaattcaataatcaaaagctacaaatcctagcttcaagtataatcaattttggaggcagaatcaatttt 31804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 179
Target Start/End: Original strand, 23595 - 23695
Alignment:
Q  78 taaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaat 177  Q
    |||||||||||||||  ||||||||  || |||||| |||  |||||| |||||||||||||||| ||||||||  |||||| | |||||||| ||||||    
T  23595 taaaagtgagttgaatgataaattttagtctaaaaa-tcacgtctagattcaaaagctacaaatcctagcttcagttagaattatttatggagacaaaat 23693  T
Q  178 ca 179  Q
    ||    
T  23694 ca 23695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 164
Target Start/End: Original strand, 14108 - 14200
Alignment:
Q  70 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 164  Q
    ||||||| | |||||||||||||  ||||||||| || ||||| |||||||||||||||| ||||||  | |  |||||||||||||||||||||    
T  14108 cattcatgtgaaagtgagttgaaaaataaatttgagtgtaaaa-atcaattctagaatcataagcta-gattgctagcttcaagtagaatcaatt 14200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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