View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1714_low_20 (Length: 362)

Name: NF1714_low_20
Description: NF1714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1714_low_20
NF1714_low_20
[»] chr2 (10 HSPs)
chr2 (19-286)||(27766352-27766621)
chr2 (94-195)||(25917264-25917365)
chr2 (71-134)||(19303228-19303291)
chr2 (71-134)||(28722118-28722181)
chr2 (71-134)||(35262952-35263015)
chr2 (71-134)||(35273577-35273640)
chr2 (68-175)||(42255572-42255677)
chr2 (71-121)||(24778525-24778575)
chr2 (68-112)||(9851477-9851520)
chr2 (71-135)||(22682628-22682691)
[»] chr3 (19 HSPs)
chr3 (100-195)||(13292461-13292556)
chr3 (69-195)||(13362652-13362778)
chr3 (71-134)||(21640022-21640085)
chr3 (61-134)||(6491117-6491190)
chr3 (19-108)||(19905140-19905229)
chr3 (72-121)||(52282991-52283040)
chr3 (71-134)||(9982667-9982730)
chr3 (71-134)||(12238396-12238459)
chr3 (71-134)||(14954594-14954656)
chr3 (71-134)||(28315019-28315082)
chr3 (71-134)||(29934343-29934406)
chr3 (71-134)||(29983497-29983560)
chr3 (71-134)||(38204645-38204708)
chr3 (71-134)||(39382077-39382140)
chr3 (71-121)||(12967511-12967561)
chr3 (80-134)||(15651894-15651948)
chr3 (71-124)||(8774053-8774106)
chr3 (21-121)||(12758520-12758620)
chr3 (61-121)||(6501771-6501831)
[»] chr4 (8 HSPs)
chr4 (68-189)||(21810743-21810863)
chr4 (23-195)||(11544770-11544941)
chr4 (66-122)||(19241401-19241457)
chr4 (72-122)||(39937940-39937989)
chr4 (68-195)||(11449837-11449963)
chr4 (80-134)||(5022145-5022199)
chr4 (80-134)||(18753284-18753338)
chr4 (74-124)||(29120557-29120607)
[»] chr6 (10 HSPs)
chr6 (80-134)||(11205312-11205366)
chr6 (71-134)||(17063569-17063632)
chr6 (71-134)||(18554637-18554700)
chr6 (71-134)||(21127378-21127441)
chr6 (71-122)||(21624285-21624336)
chr6 (71-134)||(27505280-27505343)
chr6 (80-122)||(11234846-11234888)
chr6 (71-121)||(17380757-17380807)
chr6 (82-119)||(23295989-23296026)
chr6 (71-127)||(11021306-11021362)
[»] scaffold0273 (1 HSPs)
scaffold0273 (72-121)||(4887-4936)
[»] scaffold0498 (1 HSPs)
scaffold0498 (71-134)||(4117-4179)
[»] scaffold0443 (1 HSPs)
scaffold0443 (71-134)||(1882-1945)
[»] scaffold0382 (1 HSPs)
scaffold0382 (71-134)||(2113-2176)
[»] scaffold0290 (1 HSPs)
scaffold0290 (71-130)||(19519-19578)
[»] scaffold0068 (1 HSPs)
scaffold0068 (71-134)||(8588-8651)
[»] scaffold0056 (1 HSPs)
scaffold0056 (71-134)||(26514-26577)
[»] scaffold0042 (1 HSPs)
scaffold0042 (71-134)||(4668-4731)
[»] scaffold0040 (1 HSPs)
scaffold0040 (68-166)||(8564-8660)
[»] chr8 (10 HSPs)
chr8 (71-134)||(3842924-3842987)
chr8 (72-123)||(9319759-9319810)
chr8 (71-134)||(17287075-17287137)
chr8 (71-121)||(23800829-23800879)
chr8 (71-121)||(31214425-31214475)
chr8 (71-121)||(45292033-45292083)
chr8 (66-114)||(14547505-14547553)
chr8 (96-148)||(21838090-21838142)
chr8 (19-121)||(28888443-28888547)
chr8 (71-119)||(35028380-35028428)
[»] chr7 (7 HSPs)
chr7 (71-134)||(9169560-9169623)
chr7 (71-134)||(11004554-11004617)
chr7 (71-134)||(13027865-13027927)
chr7 (71-121)||(13902567-13902616)
chr7 (71-121)||(14186880-14186930)
chr7 (71-121)||(15087745-15087795)
chr7 (80-122)||(32265632-32265674)
[»] chr5 (17 HSPs)
chr5 (71-134)||(14456906-14456969)
chr5 (71-134)||(19464875-19464938)
chr5 (71-134)||(20552718-20552781)
chr5 (71-134)||(21705259-21705322)
chr5 (71-134)||(23487730-23487793)
chr5 (71-134)||(24982708-24982771)
chr5 (215-286)||(25186255-25186326)
chr5 (71-121)||(9088174-9088224)
chr5 (71-133)||(34052862-34052924)
chr5 (80-134)||(37739861-37739915)
chr5 (71-124)||(13546420-13546473)
chr5 (71-124)||(33021842-33021894)
chr5 (71-134)||(11208906-11208970)
chr5 (94-134)||(20967196-20967236)
chr5 (226-286)||(25228148-25228208)
chr5 (226-286)||(25292304-25292364)
chr5 (71-123)||(30069207-30069259)
[»] chr1 (5 HSPs)
chr1 (71-134)||(51630015-51630078)
chr1 (71-121)||(20442142-20442192)
chr1 (80-134)||(23917083-23917136)
chr1 (71-121)||(34256353-34256403)
chr1 (93-125)||(24154874-24154906)
[»] scaffold0711 (1 HSPs)
scaffold0711 (73-194)||(2659-2780)
[»] scaffold0217 (1 HSPs)
scaffold0217 (73-122)||(23021-23070)
[»] scaffold0839 (1 HSPs)
scaffold0839 (71-123)||(5269-5321)
[»] scaffold0142 (1 HSPs)
scaffold0142 (71-123)||(39885-39937)


Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 286
Target Start/End: Original strand, 27766352 - 27766621
Alignment:
Q  19 agactctgagctcatcagactcttactagttcaaaaacacttagaactttt-tgaaaaagtcaacacaattaaactctcccttcttgtgtttttctcccc 117  Q
    ||||||| ||||||||||| |||||| ||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  27766352 agactctaagctcatcagattcttaccagttcaaaaacacatagaatttttttgaaaaagtcaacacaattaaactctcccttcttgtatttttctcccc 27766451  T
Q  118 ttcagttgatatcagagaaaggtttgtgctcaatcaattaaccgtgtcacagttaaagatctagagagaaaaacatgtgtgggg-tcaacatctcataac 216  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  27766452 ttcagttggtatcagagcaaggtttgtgctcaatcaattaaccgtgtcacagttaaagatctagagagaaaaacatgtgtggggatcagcatctcataac 27766551  T
Q  217 attagaacttctgaagcttcagactcagataaactaactttgatgtttcatataagtggaaaagttttat 286  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27766552 attagaacttctgaagcttcagactcagataaactaactctgatgtttcatataagtggaaaagttttat 27766621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 195
Target Start/End: Original strand, 25917264 - 25917365
Alignment:
Q  94 ctcccttcttgtgtttttctccccttcagttgatatcagagaaaggtttgtgctcaatcaattaaccgtgtcacagttaaagatctagagagaaaaacat 193  Q
    |||||||||||| |||||||| |||||||||| ||||| || |   ||||||||||  || ||||  |||| ||||| |||||||||| ||| |||||||    
T  25917264 ctcccttcttgtatttttctcaccttcagttggtatcaaagtaccttttgtgctcagccacttaatagtgttacagtcaaagatctagtgaggaaaacat 25917363  T
Q  194 gt 195  Q
    ||    
T  25917364 gt 25917365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 19303228 - 19303291
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcagttgatatcagag 134  Q
    |||||||  ||||||||| ||| | ||||||||||||||||||| |||||| ||| ||||||||    
T  19303228 gaaaaagaaaacacaattcaacccccccttcttgtgtttttctcaccttcaattggtatcagag 19303291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 28722118 - 28722181
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcagttgatatcagag 134  Q
    |||||||  ||||||||| ||| | ||||||||||||||||||| |||||| ||| ||||||||    
T  28722118 gaaaaagaaaacacaattcaacccccccttcttgtgtttttctcaccttcaattggtatcagag 28722181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 134
Target Start/End: Complemental strand, 35263015 - 35262952
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcagttgatatcagag 134  Q
    |||||||  ||||||||| ||| | ||||||||||||||||||| |||||| ||| ||||||||    
T  35263015 gaaaaagaaaacacaattcaacccccccttcttgtgtttttctcaccttcaattggtatcagag 35262952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 134
Target Start/End: Complemental strand, 35273640 - 35273577
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcagttgatatcagag 134  Q
    |||||||  ||||||||| ||| | ||||||||||||||||||| |||||| ||| ||||||||    
T  35273640 gaaaaagaaaacacaattcaacccccccttcttgtgtttttctcaccttcaattggtatcagag 35273577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 175
Target Start/End: Complemental strand, 42255677 - 42255572
Alignment:
Q  68 tttgaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcagttgatatcagagaaaggtttgtgctcaatcaattaaccgtgtcac 167  Q
    |||||||||| ||||| |||| || |||||||| |||| |||||||| ||||||||||||||| ||  ||||| ||||||||  || |||||  || |||    
T  42255677 tttgaaaaagccaacataattcaa-tctccctt-ttgtatttttctcaccttcagttgatatcggatcaaggtctgtgctcatccacttaactatgccac 42255580  T
Q  168 agttaaag 175  Q
    ||||||||    
T  42255579 agttaaag 42255572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 24778575 - 24778525
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttca 121  Q
    ||||||| |||||||||| ||| | ||||||||||||||||||| ||||||    
T  24778575 gaaaaagccaacacaattcaacccccccttcttgtgtttttctcaccttca 24778525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 112
Target Start/End: Complemental strand, 9851520 - 9851477
Alignment:
Q  68 tttgaaaaagtcaacacaattaaactctcccttcttgtgtttttc 112  Q
    ||||||| ||||||||||||| |||||| ||||||||||||||||    
T  9851520 tttgaaagagtcaacacaattcaactct-ccttcttgtgtttttc 9851477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 135
Target Start/End: Complemental strand, 22682691 - 22682628
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcagttgatatcagaga 135  Q
    |||||||| ||||||||| ||| | ||||||||||||||||| | |||||||||| || ||||||    
T  22682691 gaaaaagttaacacaattcaaccc-cccttcttgtgtttttcacaccttcagttggtaccagaga 22682628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 100 - 195
Target Start/End: Original strand, 13292461 - 13292556
Alignment:
Q  100 tcttgtgtttttctccccttcagttgatatcagagaaaggtttgtgctcaatcaattaaccgtgtcacagttaaagatctagagagaaaaacatgt 195  Q
    ||||||||||||||| ||||| |||| ||||| || | ||||||||||||| || ||||||||| |||||||||||||  | ||||||||||||||    
T  13292461 tcttgtgtttttctcaccttcggttggtatcaaagtacggtttgtgctcaaccacttaaccgtgccacagttaaagattcatagagaaaaacatgt 13292556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 69 - 195
Target Start/End: Complemental strand, 13362778 - 13362652
Alignment:
Q  69 ttgaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcagttgatatcagagaaaggtttgtgctcaatcaattaaccgtgtcaca 168  Q
    |||||||| |||| |||||| ||| | | | ||||||||||| ||| |||||||||| ||||| || | ||||||||||||| || ||||||||| ||||    
T  13362778 ttgaaaaaatcaatacaattcaaccccctcctcttgtgttttactcaccttcagttggtatcaaagtacggtttgtgctcaaccacttaaccgtgccaca 13362679  T
Q  169 gttaaagatctagagagaaaaacatgt 195  Q
     ||||||||  | ||||||||||||||    
T  13362678 attaaagattcatagagaaaaacatgt 13362652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 134
Target Start/End: Complemental strand, 21640085 - 21640022
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcagttgatatcagag 134  Q
    |||||||| ||||||||| ||| | ||||||||||||||||||| |||||| ||| ||||||||    
T  21640085 gaaaaagtaaacacaattcaacccccccttcttgtgtttttctcaccttcaattggtatcagag 21640022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 134
Target Start/End: Original strand, 6491117 - 6491190
Alignment:
Q  61 agaactttttgaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcagttgatatcagag 134  Q
    |||| |||| |||||||  ||||||||| ||| | ||||||||||||||||||| |||||| ||| ||||||||    
T  6491117 agaatttttagaaaaagaaaacacaattcaacccccccttcttgtgtttttctcaccttcaattggtatcagag 6491190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 19905229 - 19905140
Alignment:
Q  19 agactctgagctcatcagactcttactagttcaaaaacacttagaactttttgaaaaagtcaacacaattaaactctcccttcttgtgtt 108  Q
    ||||||||| ||||  ||||||| |||||| |  ||||||||||||   ||||||||||||||||||||| ||  |||| ||||||||||    
T  19905229 agactctgaactcaagagactctaactagtacttaaacacttagaaaaatttgaaaaagtcaacacaattcaaacctcctttcttgtgtt 19905140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 52283040 - 52282991
Alignment:
Q  72 aaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttca 121  Q
    ||||||||||||||||| ||| | ||||||||||||||||||| ||||||    
T  52283040 aaaaagtcaacacaattcaacccccccttcttgtgtttttctcaccttca 52282991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 9982667 - 9982730
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcagttgatatcagag 134  Q
    |||||||  ||||||||| ||| | ||||||||||||||||||| |||||| ||| ||||||||    
T  9982667 gaaaaagaaaacacaattcaacccccccttcttgtgtttttctcaccttcaattggtatcagag 9982730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 12238396 - 12238459
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcagttgatatcagag 134  Q
    |||||||  ||||||||| ||| | ||||||||||||||||||| |||||| ||| ||||||||    
T  12238396 gaaaaagaaaacacaattcaacccccccttcttgtgtttttctcaccttcaattggtatcagag 12238459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 134
Target Start/End: Complemental strand, 14954656 - 14954594
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcagttgatatcagag 134  Q
    ||||||| |||||||||| ||| | ||||||||||||||||||| |||||| ||| ||||||||    
T  14954656 gaaaaagccaacacaattcaaccc-cccttcttgtgtttttctcaccttcaattggtatcagag 14954594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 28315019 - 28315082
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcagttgatatcagag 134  Q
    |||||||  ||||||||| ||| | ||||||||||||||||||| |||||| ||| ||||||||    
T  28315019 gaaaaagaaaacacaattcaacccccccttcttgtgtttttctcaccttcaattggtatcagag 28315082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 29934343 - 29934406
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcagttgatatcagag 134  Q
    |||||||  ||||||||| ||| | ||||||||||||||||||| |||||| ||| ||||||||    
T  29934343 gaaaaagaaaacacaattcaacccccccttcttgtgtttttctcaccttcaattggtatcagag 29934406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 29983497 - 29983560
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcagttgatatcagag 134  Q
    |||||||  ||||||||| ||| | ||||||||||||||||||| |||||| ||| ||||||||    
T  29983497 gaaaaagaaaacacaattcaacccccccttcttgtgtttttctcaccttcaattggtatcagag 29983560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 134
Target Start/End: Complemental strand, 38204708 - 38204645
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcagttgatatcagag 134  Q
    |||||||  ||||||||| ||| | ||||||||||||||||||| |||||| ||| ||||||||    
T  38204708 gaaaaagaaaacacaattcaacccccccttcttgtgtttttctcaccttcaattggtatcagag 38204645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 134
Target Start/End: Complemental strand, 39382140 - 39382077
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcagttgatatcagag 134  Q
    |||||||  ||||||||| ||| | ||||||||||||||||||| |||||| ||| ||||||||    
T  39382140 gaaaaagaaaacacaattcaacccccccttcttgtgtttttctcaccttcaattggtatcagag 39382077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 12967561 - 12967511
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttca 121  Q
    |||||||  ||||||||| ||||| ||||||||||||||||||| ||||||    
T  12967561 gaaaaagctaacacaattcaactcccccttcttgtgtttttctcaccttca 12967511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 134
Target Start/End: Original strand, 15651894 - 15651948
Alignment:
Q  80 aacacaattaaactctcccttcttgtgtttttctccccttcagttgatatcagag 134  Q
    ||||||||| ||| | ||||||||||||||||||| |||||| ||| ||||||||    
T  15651894 aacacaattcaacccccccttcttgtgtttttctcaccttcaattggtatcagag 15651948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 8774106 - 8774053
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcagtt 124  Q
    |||||||  ||||||||| ||| | ||||||||||||||||||| |||||||||    
T  8774106 gaaaaagaaaacacaattcaacccccccttcttgtgtttttctcaccttcagtt 8774053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 12758520 - 12758620
Alignment:
Q  21 actctgagctcatcagactcttactagttcaaaaacacttag-aactttttgaaaaagtcaacacaattaaactctcccttcttgtgtttttctcccctt 119  Q
    |||| ||||||| |||||||| || ||||||||||||||||| ||  ||||||||||| ||||| |||| ||| | || || |||| |||||||| ||||    
T  12758520 actccgagctcaccagactctgaccagttcaaaaacacttagaaaagttttgaaaaaggcaacataattcaac-cccctttgttgtatttttctcacctt 12758618  T
Q  120 ca 121  Q
    ||    
T  12758619 ca 12758620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 6501771 - 6501831
Alignment:
Q  61 agaactttttgaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttca 121  Q
    |||| |||| |||||||  ||||||||| ||| | ||||||||||||||||||| ||||||    
T  6501771 agaatttttagaaaaagaaaacacaattcaacccccccttcttgtgtttttctcaccttca 6501831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 68 - 189
Target Start/End: Original strand, 21810743 - 21810863
Alignment:
Q  68 tttgaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcagttgatatcagagaaaggtttgtgctcaatcaattaaccgtgtcac 167  Q
    ||||||||||||||||||||| ||| | |||||||| |||||||||| |||||||||| |||  ||| | |||||||| ||||  | |||||| || ||     
T  21810743 tttgaaaaagtcaacacaattcaaccc-cccttcttatgtttttctcaccttcagttggtatttgagcacggtttgtgatcaactacttaaccatgccat 21810841  T
Q  168 agttaaagatctagagagaaaa 189  Q
    | ||||||||||||||||||||    
T  21810842 aattaaagatctagagagaaaa 21810863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 23 - 195
Target Start/End: Complemental strand, 11544941 - 11544770
Alignment:
Q  23 tctgagctcatcagactcttactagttcaaaaacacttagaacttttt-gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttca 121  Q
    ||||| ||||||||||||| || ||| ||||| ||||||||| ||||| ||||||| |||||||||| ||| |||||||||||||||||| || |||| |    
T  11544941 tctgaactcatcagactctgaccagtgcaaaa-cacttagaaattttttgaaaaagccaacacaattcaac-ctcccttcttgtgtttttgtcaccttta 11544844  T
Q  122 gttgatatcagagaaaggtttgtgctcaatcaattaaccgtgtcacagttaaagatctagagagaaaaacatgt 195  Q
     ||| |||||||| |   ||||  ||||  || |||| |||| |||| | ||||||| | ||||||||||||||    
T  11544843 cttggtatcagagcataatttgcactcagccacttaatcgtgccacaatcaaagatccaaagagaaaaacatgt 11544770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 19241457 - 19241401
Alignment:
Q  66 tttttgaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcag 122  Q
    ||||||||||||  ||||||||| ||| ||||||||||||||||||||| |||||||    
T  19241457 tttttgaaaaagaaaacacaattcaaccctcccttcttgtgtttttctcaccttcag 19241401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 39937989 - 39937940
Alignment:
Q  72 aaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcag 122  Q
    ||||||||||||||||| || |||||||||||||||||||||| |||||||    
T  39937989 aaaaagtcaacacaatttaa-tctcccttcttgtgtttttctcaccttcag 39937940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 195
Target Start/End: Original strand, 11449837 - 11449963
Alignment:
Q  68 tttgaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcagttgatatcagagaaaggtttgtgctcaatcaattaaccgtgtcac 167  Q
    |||||||||| |||||||||| ||| ||||||||||||||| || || |||| | ||| |||||||| |  || || |||||  || ||||  ||| |||    
T  11449837 tttgaaaaagccaacacaattcaac-ctcccttcttgtgttattgtcacctttacttggtatcagagcatagtctgcgctcagccacttaattgtgccac 11449935  T
Q  168 agttaaagatctagagagaaaaacatgt 195  Q
    | ||||||||| | ||||||||||||||    
T  11449936 aattaaagatccaaagagaaaaacatgt 11449963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 134
Target Start/End: Complemental strand, 5022199 - 5022145
Alignment:
Q  80 aacacaattaaactctcccttcttgtgtttttctccccttcagttgatatcagag 134  Q
    ||||||||| ||| | ||||||||||||||||||| |||||| ||| ||||||||    
T  5022199 aacacaattcaacccccccttcttgtgtttttctcaccttcaattggtatcagag 5022145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 134
Target Start/End: Original strand, 18753284 - 18753338
Alignment:
Q  80 aacacaattaaactctcccttcttgtgtttttctccccttcagttgatatcagag 134  Q
    ||||||||| ||| | ||||||||||||||||||| |||||| ||| ||||||||    
T  18753284 aacacaattcaacccccccttcttgtgtttttctcaccttcaattggtatcagag 18753338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 124
Target Start/End: Complemental strand, 29120607 - 29120557
Alignment:
Q  74 aaagtcaacacaattaaactctcccttcttgtgtttttctccccttcagtt 124  Q
    |||| |||||||||| ||| | ||||||||||||||||||| |||||||||    
T  29120607 aaagccaacacaattcaacccccccttcttgtgtttttctcaccttcagtt 29120557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 134
Target Start/End: Complemental strand, 11205366 - 11205312
Alignment:
Q  80 aacacaattaaactctcccttcttgtgtttttctccccttcagttgatatcagag 134  Q
    ||||||||| ||||| ||||||||||||||||||| |||||| ||| ||||||||    
T  11205366 aacacaattcaactcccccttcttgtgtttttctcaccttcaattggtatcagag 11205312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 134
Target Start/End: Complemental strand, 17063632 - 17063569
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcagttgatatcagag 134  Q
    |||||||  ||||||||| ||| | ||||||||||||||||||| |||||| ||| ||||||||    
T  17063632 gaaaaagaaaacacaattcaacccccccttcttgtgtttttctcaccttcaattggtatcagag 17063569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 134
Target Start/End: Complemental strand, 18554700 - 18554637
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcagttgatatcagag 134  Q
    |||||||  ||||||||| ||| | ||||||||||||||||||| |||||| ||| ||||||||    
T  18554700 gaaaaagaaaacacaattcaacccccccttcttgtgtttttctcaccttcaattggtatcagag 18554637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 134
Target Start/End: Complemental strand, 21127441 - 21127378
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcagttgatatcagag 134  Q
    |||||||  ||||||||| ||| | ||||||||||||||||||| |||||| ||| ||||||||    
T  21127441 gaaaaagaaaacacaattcaacccccccttcttgtgtttttctcaccttcaattggtatcagag 21127378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 122
Target Start/End: Complemental strand, 21624336 - 21624285
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcag 122  Q
    ||||||| |||||||||| ||| | ||||||||||||||||||| |||||||    
T  21624336 gaaaaagccaacacaattcaacccccccttcttgtgtttttctcaccttcag 21624285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 134
Target Start/End: Complemental strand, 27505343 - 27505280
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcagttgatatcagag 134  Q
    |||||||  ||||||||| ||| | ||||||||||||||||||| |||||| ||| ||||||||    
T  27505343 gaaaaagaaaacacaattcaacccccccttcttgtgtttttctcaccttcaattggtatcagag 27505280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 122
Target Start/End: Complemental strand, 11234888 - 11234846
Alignment:
Q  80 aacacaattaaactctcccttcttgtgtttttctccccttcag 122  Q
    ||||||||| ||||| ||||||||||||||||||| |||||||    
T  11234888 aacacaattcaactcccccttcttgtgtttttctcaccttcag 11234846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 17380807 - 17380757
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttca 121  Q
    ||||||| |||||||||| ||| | ||||||||||||||||||| ||||||    
T  17380807 gaaaaagccaacacaattcaacccccccttcttgtgtttttctcaccttca 17380757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 119
Target Start/End: Complemental strand, 23296026 - 23295989
Alignment:
Q  82 cacaattaaactctcccttcttgtgtttttctcccctt 119  Q
    ||||||||||||| ||||||||||||||||||| ||||    
T  23296026 cacaattaaactcccccttcttgtgtttttctcacctt 23295989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 127
Target Start/End: Complemental strand, 11021362 - 11021306
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcagttgat 127  Q
    |||||||  ||||||||| ||| | ||||||||||||||||||| ||||||| ||||    
T  11021362 gaaaaagaaaacacaattcaacccccccttcttgtgtttttctcaccttcagatgat 11021306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0273 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0273
Description:

Target: scaffold0273; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 4936 - 4887
Alignment:
Q  72 aaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttca 121  Q
    ||||||| ||||||||| ||||| ||||||||||||||||||| ||||||    
T  4936 aaaaagttaacacaattcaactcccccttcttgtgtttttctcaccttca 4887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0498 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0498
Description:

Target: scaffold0498; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 4117 - 4179
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcagttgatatcagag 134  Q
    |||||||||||||||||| ||| |||||| ||||||| |||||| |||||||||| || |||||    
T  4117 gaaaaagtcaacacaattcaac-ctccctacttgtgtctttctcaccttcagttggtaccagag 4179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0443 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0443
Description:

Target: scaffold0443; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 1882 - 1945
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcagttgatatcagag 134  Q
    |||||||  ||||||||| ||| | ||||||||||||||||||| |||||| ||| ||||||||    
T  1882 gaaaaagaaaacacaattcaacccccccttcttgtgtttttctcaccttcaattggtatcagag 1945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0382 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0382
Description:

Target: scaffold0382; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 2113 - 2176
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcagttgatatcagag 134  Q
    |||||||  ||||||||| ||| | ||||||||||||||||||| |||||| ||| ||||||||    
T  2113 gaaaaagaaaacacaattcaacccccccttcttgtgtttttctcaccttcaattggtatcagag 2176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 130
Target Start/End: Original strand, 19519 - 19578
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcagttgatatc 130  Q
    ||||||| |||||||||| ||| | ||||||||||||||||||| |||||| ||| ||||    
T  19519 gaaaaagccaacacaattcaacccccccttcttgtgtttttctcaccttcaattggtatc 19578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 8588 - 8651
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcagttgatatcagag 134  Q
    |||||||  ||||||||| ||| | ||||||||||||||||||| |||||| ||| ||||||||    
T  8588 gaaaaagaaaacacaattcaacccccccttcttgtgtttttctcaccttcaattggtatcagag 8651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 26514 - 26577
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcagttgatatcagag 134  Q
    |||||||  ||||||||| ||| | ||||||||||||||||||| |||||| ||| ||||||||    
T  26514 gaaaaagctaacacaattcaacccccccttcttgtgtttttctcaccttcaattggtatcagag 26577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 134
Target Start/End: Complemental strand, 4731 - 4668
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcagttgatatcagag 134  Q
    |||||||  ||||||||| ||| | ||||||||||||||||||| |||||| ||| ||||||||    
T  4731 gaaaaagaaaacacaattcaacccccccttcttgtgtttttctcaccttcaattggtatcagag 4668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 166
Target Start/End: Original strand, 8564 - 8660
Alignment:
Q  68 tttgaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcagttgatatcagagaaaggtttgtgctcaatcaattaaccgtgtca 166  Q
    |||||||||| |||||||||| ||| |  |||| || |||||||||   ||||||||| |||||||||| ||||||||||||  || |||| |||||||    
T  8564 tttgaaaaaggcaacacaattcaaccc--ccttattatgtttttcttatcttcagttggtatcagagaacggtttgtgctcacccatttaatcgtgtca 8660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 134
Target Start/End: Complemental strand, 3842987 - 3842924
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcagttgatatcagag 134  Q
    |||||||  ||||||||| ||| | ||||||||||||||||||| |||||| ||| ||||||||    
T  3842987 gaaaaagaaaacacaattcaacccccccttcttgtgtttttctcaccttcaattggtatcagag 3842924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 72 - 123
Target Start/End: Complemental strand, 9319810 - 9319759
Alignment:
Q  72 aaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcagt 123  Q
    ||||| ||||||||||| ||| | ||||||||||||||||||| ||||||||    
T  9319810 aaaaaatcaacacaattcaacccccccttcttgtgtttttctcaccttcagt 9319759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 17287075 - 17287137
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcagttgatatcagag 134  Q
    ||||||| |||||||||| ||| | ||||||||||||||||||| |||||| ||| ||||||||    
T  17287075 gaaaaagccaacacaattcaaccc-cccttcttgtgtttttctcaccttcaattggtatcagag 17287137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 23800879 - 23800829
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttca 121  Q
    |||||||  ||||||||| ||||| ||||||||||||||||||| ||||||    
T  23800879 gaaaaagaaaacacaattcaactcccccttcttgtgtttttctcaccttca 23800829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 31214475 - 31214425
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttca 121  Q
    |||||||  ||||||||| ||||| ||||||||||||||||||| ||||||    
T  31214475 gaaaaagaaaacacaattcaactcccccttcttgtgtttttctcaccttca 31214425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 45292083 - 45292033
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttca 121  Q
    |||||||  ||||||||| ||||| ||||||||||||||||||| ||||||    
T  45292083 gaaaaagctaacacaattcaactcccccttcttgtgtttttctcaccttca 45292033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 14547553 - 14547505
Alignment:
Q  66 tttttgaaaaagtcaacacaattaaactctcccttcttgtgtttttctc 114  Q
    |||||||||||  |||||||||| |||| || |||||||||||||||||    
T  14547553 tttttgaaaaaaccaacacaattcaactttcacttcttgtgtttttctc 14547505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 21838142 - 21838090
Alignment:
Q  96 cccttcttgtgtttttctccccttcagttgatatcagagaaaggtttgtgctc 148  Q
    |||||||||||||| |||| |||||||||| |||||||| |  ||||||||||    
T  21838142 cccttcttgtgtttctctctccttcagttggtatcagagcacagtttgtgctc 21838090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 121
Target Start/End: Complemental strand, 28888547 - 28888443
Alignment:
Q  19 agactctgagctcatcagactcttactagttcaaaaacacttagaact-ttttgaaaaagtcaacacaattaaactctcc-cttcttgtgtttttctccc 116  Q
    ||||||||| | ||||| ||||| || ||||||  |||||||||||   ||||||||||  |||||||||| ||| | || ||||||||||||||||| |    
T  28888547 agactctgaacccatcatactctgaccagttcatgaacacttagaaaagttttgaaaaaaccaacacaattcaacccccctcttcttgtgtttttctcac 28888448  T
Q  117 cttca 121  Q
    |||||    
T  28888447 cttca 28888443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 35028380 - 35028428
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctcccctt 119  Q
    |||||||||||||||||| ||| ||| |||||||| |||||||| ||||    
T  35028380 gaaaaagtcaacacaattcaaccctcacttcttgtatttttctcacctt 35028428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 134
Target Start/End: Complemental strand, 9169623 - 9169560
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcagttgatatcagag 134  Q
    |||||||  ||||||||| ||| | ||||||||||||||||||| |||||| ||| ||||||||    
T  9169623 gaaaaagaaaacacaattcaacccccccttcttgtgtttttctcaccttcaattggtatcagag 9169560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 134
Target Start/End: Complemental strand, 11004617 - 11004554
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcagttgatatcagag 134  Q
    |||||||  ||||||||| ||| | ||||||||||||||||||| |||||| ||| ||||||||    
T  11004617 gaaaaagaaaacacaattcaacccccccttcttgtgtttttctcaccttcaattggtatcagag 11004554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 13027865 - 13027927
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcagttgatatcagag 134  Q
    |||||||  ||||||||| ||| ||||||||||||||||||||| |||||| ||| ||||||||    
T  13027865 gaaaaagcaaacacaattcaac-ctcccttcttgtgtttttctcaccttcaattggtatcagag 13027927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 121
Target Start/End: Original strand, 13902567 - 13902616
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttca 121  Q
    |||||||  ||||||||| ||| ||||||||||||||||||||||||||||    
T  13902567 gaaaaagctaacacaattcaac-ctcccttcttgtgtttttctccccttca 13902616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 14186930 - 14186880
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttca 121  Q
    |||||||| ||||||||| ||| | ||||||||||||||||||| ||||||    
T  14186930 gaaaaagtaaacacaattcaacccccccttcttgtgtttttctcaccttca 14186880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 15087795 - 15087745
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttca 121  Q
    ||||||||||||||| || ||| | ||||||||||||||||||| ||||||    
T  15087795 gaaaaagtcaacacagttcaacccccccttcttgtgtttttctcaccttca 15087745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 122
Target Start/End: Original strand, 32265632 - 32265674
Alignment:
Q  80 aacacaattaaactctcccttcttgtgtttttctccccttcag 122  Q
    ||||||||| ||||| ||||||||||||||||||| |||||||    
T  32265632 aacacaattcaactcccccttcttgtgtttttctcaccttcag 32265674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 134
Target Start/End: Complemental strand, 14456969 - 14456906
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcagttgatatcagag 134  Q
    |||||||  ||||||||| ||| | ||||||||||||||||||| |||||| ||| ||||||||    
T  14456969 gaaaaagaaaacacaattcaacccccccttcttgtgtttttctcaccttcaattggtatcagag 14456906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 19464875 - 19464938
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcagttgatatcagag 134  Q
    |||||||  ||||||||| ||| | ||||||||||||||||||| |||||| ||| ||||||||    
T  19464875 gaaaaagaaaacacaattcaacccccccttcttgtgtttttctcaccttcaattggtatcagag 19464938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 20552718 - 20552781
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcagttgatatcagag 134  Q
    |||||||  ||||||||| ||| | ||||||||||||||||||| |||||| ||| ||||||||    
T  20552718 gaaaaagaaaacacaattcaacccccccttcttgtgtttttctcaccttcaattggtatcagag 20552781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 134
Target Start/End: Complemental strand, 21705322 - 21705259
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcagttgatatcagag 134  Q
    |||||||  ||||||||| ||| | ||||||||||||||||||| |||||| ||| ||||||||    
T  21705322 gaaaaagaaaacacaattcaacccccccttcttgtgtttttctcaccttcaattggtatcagag 21705259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 134
Target Start/End: Complemental strand, 23487793 - 23487730
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcagttgatatcagag 134  Q
    |||||||  ||||||||| ||| | ||||||||||||||||||| |||||| ||| ||||||||    
T  23487793 gaaaaagaaaacacaattcaacccccccttcttgtgtttttctcaccttcaattggtatcagag 23487730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 134
Target Start/End: Complemental strand, 24982771 - 24982708
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcagttgatatcagag 134  Q
    |||||||  ||||||||| ||| | ||||||||||||||||||| |||||| ||| ||||||||    
T  24982771 gaaaaagaaaacacaattcaacccccccttcttgtgtttttctcaccttcaattggtatcagag 24982708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 286
Target Start/End: Original strand, 25186255 - 25186326
Alignment:
Q  215 acattagaacttctgaagcttcagactcagataaactaactttgatgtttcatataagtggaaaagttttat 286  Q
    |||| ||||| |||||||| |||||||||||| |||  |||  ||||||| ||||||||||||| |||||||    
T  25186255 acatcagaacctctgaagcatcagactcagattaaccgactcagatgttttatataagtggaaaggttttat 25186326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 9088224 - 9088174
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttca 121  Q
    ||||||| |||||||||| ||| || |||||||||||||||||| ||||||    
T  9088224 gaaaaagccaacacaattcaacccttccttcttgtgtttttctcaccttca 9088174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 133
Target Start/End: Original strand, 34052862 - 34052924
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcagttgatatcaga 133  Q
    |||||||  ||||||||| ||| | ||||||||||||||||||| |||||| ||| |||||||    
T  34052862 gaaaaagaaaacacaattcaacccccccttcttgtgtttttctcaccttcaattggtatcaga 34052924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 134
Target Start/End: Complemental strand, 37739915 - 37739861
Alignment:
Q  80 aacacaattaaactctcccttcttgtgtttttctccccttcagttgatatcagag 134  Q
    ||||||||| ||| | ||||||||||||||||||| |||||| ||| ||||||||    
T  37739915 aacacaattcaacccccccttcttgtgtttttctcaccttcaattggtatcagag 37739861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 13546420 - 13546473
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcagtt 124  Q
    |||||||| ||||||||| ||| | | ||||||||||||||||| |||||||||    
T  13546420 gaaaaagtaaacacaattcaacccactcttcttgtgtttttctcaccttcagtt 13546473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 33021894 - 33021842
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcagtt 124  Q
    ||||||| |||||||||| ||| | ||||||||||||||||||| |||||||||    
T  33021894 gaaaaagccaacacaattcaaccc-cccttcttgtgtttttctcaccttcagtt 33021842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 11208906 - 11208970
Alignment:
Q  71 gaaaaagtcaacacaattaaac-tctcccttcttgtgtttttctccccttcagttgatatcagag 134  Q
    |||||||  ||||||||| ||| || ||||||||||||||||||| |||||| ||| ||||||||    
T  11208906 gaaaaagaaaacacaattcaacctcccccttcttgtgtttttctcaccttcaattggtatcagag 11208970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 20967236 - 20967196
Alignment:
Q  94 ctcccttcttgtgtttttctccccttcagttgatatcagag 134  Q
    ||||||||||||||||||||| |||||||||| || |||||    
T  20967236 ctcccttcttgtgtttttctcaccttcagttggtaccagag 20967196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 286
Target Start/End: Original strand, 25228148 - 25228208
Alignment:
Q  226 tctgaagcttcagactcagataaactaactttgatgtttcatataagtggaaaagttttat 286  Q
    |||||||| |||||||||||| |||  |||  ||||||| ||||||||||||| |||||||    
T  25228148 tctgaagcatcagactcagattaaccgactcagatgttttatataagtggaaaggttttat 25228208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 286
Target Start/End: Original strand, 25292304 - 25292364
Alignment:
Q  226 tctgaagcttcagactcagataaactaactttgatgtttcatataagtggaaaagttttat 286  Q
    |||||||| |||||||||||| |||  |||  ||||||| ||||||||||||| |||||||    
T  25292304 tctgaagcatcagactcagattaaccgactcagatgttttatataagtggaaaggttttat 25292364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 123
Target Start/End: Complemental strand, 30069259 - 30069207
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcagt 123  Q
    |||||||  ||||||||| ||| | ||||||||||||||||||| ||||||||    
T  30069259 gaaaaagaaaacacaattcaacccccccttcttgtgtttttctcaccttcagt 30069207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 51630015 - 51630078
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcagttgatatcagag 134  Q
    |||||||  ||||||||| ||| | ||||||||||||||||||| |||||| ||| ||||||||    
T  51630015 gaaaaagaaaacacaattcaacccccccttcttgtgtttttctcaccttcaattggtatcagag 51630078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 121
Target Start/End: Original strand, 20442142 - 20442192
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttca 121  Q
    |||||||  ||||||||| ||||| ||||||||||||||||||| ||||||    
T  20442142 gaaaaagaaaacacaattcaactcccccttcttgtgtttttctcaccttca 20442192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 134
Target Start/End: Complemental strand, 23917136 - 23917083
Alignment:
Q  80 aacacaattaaactctcccttcttgtgtttttctccccttcagttgatatcagag 134  Q
    ||||||||| ||| |||||||||||||||||| || |||||||||| ||||||||    
T  23917136 aacacaattcaac-ctcccttcttgtgtttttatcaccttcagttggtatcagag 23917083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 121
Target Start/End: Original strand, 34256353 - 34256403
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttca 121  Q
    |||||||  ||||||||| ||| ||||||||||||||||||||| ||||||    
T  34256353 gaaaaagaaaacacaattcaaccctcccttcttgtgtttttctcaccttca 34256403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 125
Target Start/End: Original strand, 24154874 - 24154906
Alignment:
Q  93 tctcccttcttgtgtttttctccccttcagttg 125  Q
    |||||||||||||||||||||| ||||||||||    
T  24154874 tctcccttcttgtgtttttctcaccttcagttg 24154906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0711 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0711
Description:

Target: scaffold0711; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 194
Target Start/End: Original strand, 2659 - 2780
Alignment:
Q  73 aaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcagttgatatcagagaaaggtttgtgctcaatcaattaaccgtgtcacagtta 172  Q
    ||||| |||||||||| ||| |   |||| |||||||||||| |||||||||| |||||||| | ||| | |||||   || ||||| ||  ||||| ||    
T  2659 aaaagccaacacaattcaaccccttcttcatgtgtttttctcaccttcagttggtatcagagtacggtatatgctctgccacttaactgtaccacagata 2758  T
Q  173 aagatctagagagaaaaacatg 194  Q
    |||||| || ||||||||||||    
T  2759 aagatccagtgagaaaaacatg 2780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 23021 - 23070
Alignment:
Q  73 aaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcag 122  Q
    ||||| |||||||||| ||| | ||||||||||||||||||| |||||||    
T  23021 aaaagccaacacaattcaacccccccttcttgtgtttttctcaccttcag 23070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0839 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0839
Description:

Target: scaffold0839; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 123
Target Start/End: Complemental strand, 5321 - 5269
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcagt 123  Q
    |||||||  ||||||||| ||| | ||||||||||||||||||| ||||||||    
T  5321 gaaaaagaaaacacaattcaacccccccttcttgtgtttttctcaccttcagt 5269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 123
Target Start/End: Complemental strand, 39937 - 39885
Alignment:
Q  71 gaaaaagtcaacacaattaaactctcccttcttgtgtttttctccccttcagt 123  Q
    |||||||  ||||||||| ||| | ||||||||||||||||||| ||||||||    
T  39937 gaaaaagaaaacacaattcaacccccccttcttgtgtttttctcaccttcagt 39885  T

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