View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1714_low_23 (Length: 316)

Name: NF1714_low_23
Description: NF1714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1714_low_23
NF1714_low_23
[»] chr1 (1 HSPs)
chr1 (13-316)||(44974766-44975069)


Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 13 - 316
Target Start/End: Original strand, 44974766 - 44975069
Alignment:
Q  13 aatattggaagaactaaaggtaaaagcagagagatcagatacaagagttcaaggattcatgaaatttgtacactttttagaaggttttggaagatcatat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  44974766 aatattggaagaactaaaggtaaaagcagagagatcagatacaagagttcaaggattcatgaaatttgtacactttttagaagattttggaagatcatat 44974865  T
Q  113 accgaacaaaacaactactgttgacaaacacagcagaagcattacttgttggtcttgttttaggaacaatttacataaacattgggtttgataaagaagg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44974866 accgaacaaaacaactactgttgacaaacacagcagaagcattacttgttggtcttgttttaggaacaatttacataaacattgggtttgataaagaagg 44974965  T
Q  213 gattgagaaaaggtttggtctttttgcattcactctaacattcctcttatcttccacaactgaaacacttccaatctttatcaatgagagaccaatcttg 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44974966 gattgagaaaaggtttggtctttttgcattcactctaacattcctcttatcttccacaactgaaacacttccaatctttatcaatgagagaccaatcttg 44975065  T
Q  313 ttaa 316  Q
    ||||    
T  44975066 ttaa 44975069  T

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